BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24770.1 Length=931 Score E Sequences producing significant alignments: (Bits) Value Ahg905623 jgi|Araly1|905623|Al_scaffold_0003_2751 449 1e-125 > Ahg905623 jgi|Araly1|905623|Al_scaffold_0003_2751 Length=300 Score = 449 bits (243), Expect = 1e-125 Identities = 282/301 (94%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 247 ATGGCAACATCAAATGACCAAACCAATACTAAATCATCACAttctcgtactcttctcctt 306 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1 ATGGCAACATCAAATGACCAAACCAATACCAAATCATCACATTCTCATACTCTTCTCCTT 60 Query 307 ctcttcatcttcttatccctccttctcttcAGT-AGCCTTACAATCCCCATGACTCGTCA 365 ||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| Sbjct 61 CTCCTCATCTTCTTATCTCTCCTTCTCTTCA-TAAGCCTTACAATCCCCATGACTCGTCC 119 Query 366 TCAGTCCACATCTATGGTTGCTCCCTTCAAGAGGGTTCTCCTCGAATCTTCAGTTCCAGC 425 ||||| |||||||| |||||||||||||||||| ||||| || ||| |||| |||||||| Sbjct 120 TCAGTTCACATCTACGGTTGCTCCCTTCAAGAGAGTTCTTCTTGAACCTTCGGTTCCAGC 179 Query 426 TTCATCAACAATGGATCTACGTCCAAAGGCTAGCACACGACGCAGCCGCACTTCTAGAAG 485 |||||||||||||||||||| |||||||||| || |||||| || ||||||||||||||| Sbjct 180 TTCATCAACAATGGATCTACATCCAAAGGCTCGCGCACGACACAACCGCACTTCTAGAAG 239 Query 486 GAGAGAGTTTGGAAATGATGCTCATGAGGTTCCTAGTGGTCCAAACCCTATTTCCAACTA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GAGAGAGTTTGGAAATGATGCTCATGAGGTTCCTAGTGGTCCAAACCCTATTTCCAACTA 299 Query 546 G 546 | Sbjct 300 G 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34539362802 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5