BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24770.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905623 jgi|Araly1|905623|Al_scaffold_0003_2751 449 1e-125
> Ahg905623 jgi|Araly1|905623|Al_scaffold_0003_2751
Length=300
Score = 449 bits (243), Expect = 1e-125
Identities = 282/301 (94%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 247 ATGGCAACATCAAATGACCAAACCAATACTAAATCATCACAttctcgtactcttctcctt 306
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1 ATGGCAACATCAAATGACCAAACCAATACCAAATCATCACATTCTCATACTCTTCTCCTT 60
Query 307 ctcttcatcttcttatccctccttctcttcAGT-AGCCTTACAATCCCCATGACTCGTCA 365
||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 CTCCTCATCTTCTTATCTCTCCTTCTCTTCA-TAAGCCTTACAATCCCCATGACTCGTCC 119
Query 366 TCAGTCCACATCTATGGTTGCTCCCTTCAAGAGGGTTCTCCTCGAATCTTCAGTTCCAGC 425
||||| |||||||| |||||||||||||||||| ||||| || ||| |||| ||||||||
Sbjct 120 TCAGTTCACATCTACGGTTGCTCCCTTCAAGAGAGTTCTTCTTGAACCTTCGGTTCCAGC 179
Query 426 TTCATCAACAATGGATCTACGTCCAAAGGCTAGCACACGACGCAGCCGCACTTCTAGAAG 485
|||||||||||||||||||| |||||||||| || |||||| || |||||||||||||||
Sbjct 180 TTCATCAACAATGGATCTACATCCAAAGGCTCGCGCACGACACAACCGCACTTCTAGAAG 239
Query 486 GAGAGAGTTTGGAAATGATGCTCATGAGGTTCCTAGTGGTCCAAACCCTATTTCCAACTA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAGAGTTTGGAAATGATGCTCATGAGGTTCCTAGTGGTCCAAACCCTATTTCCAACTA 299
Query 546 G 546
|
Sbjct 300 G 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5