BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24790.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319187 jgi|Araly1|319187|fgenesh1_pm.C_scaffold_3002203 1696 0.0
Ahg940781 jgi|Araly1|940781|scaffold_601325.1 198 6e-50
> Ahg319187 jgi|Araly1|319187|fgenesh1_pm.C_scaffold_3002203
Length=1131
Score = 1696 bits (918), Expect = 0.0
Identities = 1028/1083 (95%), Gaps = 0/1083 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGTTCTTCGATGCCTGCTCCTTATAAGCAACCAAACTCACCTAAGAGAACAACAG 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 41 ATGAAGGTTCTTCGATGCCTGTTCCTTATAAGCAACCAAACTCACCTAAGAGAACAACAG 100
Query 61 GAGAAGTGGTGGCTAAGAACGCAAACGGACCATCAAACAATATGGGGGCACGTATTTTCA 120
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 101 GAGAAGTGGTGGCTAAGAATGCAAACGGGCCATCAAACAACATGGGGGCACGGATTTTCT 160
Query 121 CGTTCCGTGAGCTAGCCACCGCGACAAAGAATTTTAGACAAGAGTGCCTCATTGGTGAAG 180
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 161 CGTTCCGTGAGTTAGCCACCGCGACAAGGAATTTTCGACAAGAGTGCCTCATTGGCGAAG 220
Query 181 GTGGGTTCGGGAGGGTTTACAAAGGAAAGCTTGAAAATCCAGCTCAGGTCGTGGCAGTGA 240
| ||||||||| ||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 221 GCGGGTTCGGGCGGGTTTACAAAGGAAAGCTCGAGAATCCGGCACAGGTCGTGGCAGTGA 280
Query 241 AACAACTTGATAGGAATGGATTACAAGGACAAAGAGAGTTCTTGGTCGAGGTCTTAATGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 281 AACAACTTGATAGGAATGGATTACAAGGACAAAGAGAGTTCTTGGTCGAGGTTTTGATGC 340
Query 301 TTAGTCTTCTACATCATAGGAATCTTGTGAATCTTATCGGTTATTGCGCTGATGGAGACC 360
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 341 TTAGTCTTCTTCATCATACAAATCTTGTGAATCTTATCGGTTATTGCGCCGATGGAGACC 400
Query 361 AAAGACTTCTTGTTTACGAGTATATGCCTCTTGGATCTCTAGAAGATCATCTCCTCGATC 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 401 AAAGACTTCTTGTTTACGAGTATATGCCCCTTGGATCTCTAGAAGATCATCTCCTCGATC 460
Query 421 TTGAACCGGGACAAAAACCACTAGACTGGAACACTCGTATTAAGATTGCTTTAGGAGCAG 480
|||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 461 TTGAGCCGGGACAAAAACCACTAGACTGGAACACTCGTATTAAGATCGCTATAGGAGCGG 520
Query 481 CAAAAGGAATTGAGTATCTCCATGATGAGGCTGATCCTCCAGTGATTTACCGAGATCTTA 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 521 CAAAAGGAATTGAGTATCTCCATGATGAGGCCGATCCTCCAGTGATTTACCGAGATCTTA 580
Query 541 AATCGTCAAATATATTACTTGACCCAGAATACGTTGCGAAATTATCGGATTTCGGTTTAG 600
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 581 AATCGTCAAATATATTGCTTGACCCAAAATACGTTGCAAAATTATCGGATTTCGGTTTAG 640
Query 601 CAAAGCTAGGTCCTGTTGGAGACACACTACATGTGTCTTCCCGAGTTATGGGAACTTATG 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CAAAGCTTGGTCCTGTTGGAGACACACTACATGTGTCTTCCCGAGTTATGGGAACTTATG 700
Query 661 GTTATTGTGCTCCTGAATATCAAAGAACTGGCTATCTAACAAATAAATCAGATGTCTACA 720
|||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| |
Sbjct 701 GTTATTGTGCTCCTGAATATCAGAGAACCGGCTATCTTACAAATAAATCTGATGTCTATA 760
Query 721 GCTTTGGAGTTGTGTTGTTGGAACTTATATCCGGAAGACGAGTCATCGACACAATGAGAC 780
||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 761 GCTTTGGAGTTGTTTTGTTGGAACTTGTATCCGGAAGACGAGTTATCGACACAATGAGAC 820
Query 781 CTAGTCATGAACAAAATCTCGTTACTTGGGCACTACCGATTTTTAGAGATCCGACTAGAT 840
|||||||||| |||||||| || |||||||||| |||||| |||||||||||||||||||
Sbjct 821 CTAGTCATGAGCAAAATCTAGTCACTTGGGCACAACCGATCTTTAGAGATCCGACTAGAT 880
Query 841 ATTGGCAGCTAGCTGATCCATTGCTTCGAGGCGACTATCCGGAAAAGAGTTTGAACCAAG 900
|||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||
Sbjct 881 ATTGGCAGCTAGCTGATCCACTGCTTCGAGGTGACTACCCGGAAAAGAGTTTTAACCAAG 940
Query 901 CTATAGCTGTAGCGGCAATGTGCCTGCATGAAGAACCAACGGTTAGACCACTAATGAGTG 960
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 941 CTATAGCTGTAGCGGCAATGTGCCTGCATGAAGAACCTACGGTTAGACCACTAATGAGCG 1000
Query 961 ACGTTATTACAGCCTTGAGCTTTCTTGGTGCATCCTCAAATTCCTCCAATACCGGCTCTA 1020
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1001 ACGTTATTACAGCCTTGAGCTTTCTTGGTGCATCCTCAAACTCCTCCAATACCGGCCCTA 1060
Query 1021 ACCATTTGCAACAAAATCGATCCAACAAATATCAGGATGCAGTTCAGTGGGACTCAAGTC 1080
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1061 ACCATTTGCAACAAAATCGATCCAAGAAAGATCAGGATGCAGTTCAGTGGGACTCAAGTC 1120
Query 1081 CTA 1083
|||
Sbjct 1121 CTA 1123
> Ahg940781 jgi|Araly1|940781|scaffold_601325.1
Length=1413
Score = 198 bits (107), Expect = 6e-50
Identities = 426/574 (74%), Gaps = 46/574 (8%)
Strand=Plus/Plus
Query 177 GAAGGTGGGTTCGGGA-GGGTTTACAAAGGAAAGCTTGAAAATC-CAGCTCAGGTCGTGG 234
|||||||| || ||| | || |||||||||| ||||| | | | | | |||||| || |
Sbjct 302 GAAGGTGGATT-TGGACGTGTCTACAAAGGAAGGCTTG-ACAGCACCGGTCAGGTTGTTG 359
Query 235 CAGTGAAACAACTTGATAGGAATGGAT-TACAAGGACAA-AGAG-AGTTCTTGGTCGAGG 291
| || |||||||| || |||||||| | ||||||| || |||| | ||| |||| ||||
Sbjct 360 CTGTTAAACAACTGGACAGGAATGG-TCTACAAGG-TAACAGAGAATTTC-TGGTAGAGG 416
Query 292 -TCTTAATGCTTAGTCTTCTACATCATAGGAATCTT-GTGAATCTTATCGGTTATTGCGC 349
|||| ||||| |||||||| |||||| || ||| || || ||||| |||||||| ||
Sbjct 417 TTCTT-ATGCTCAGTCTTCTTCATCATCCCAA-CTTAGTCAACCTTATTGGTTATTGTGC 474
Query 350 TGATGGAGACCAAAGACTTCTT-GTTTACGAGTATATGCCTCTT-GGATC-TCTAGAAGA 406
||||||||| ||| | | |||| |||||||||| |||||| || ||||| | | |||||
Sbjct 475 TGATGGAGATCAACG-CCTCTTAGTTTACGAGTTTATGCC-GTTAGGATCAT-TGGAAGA 531
Query 407 TCATCTCCTCGATCTTGAACCGGGACAA--AAACCACTAGACTGGAACACT-CGTATTAA 463
||| |||| ||||||| ||| ||| || | || |||| ||||||| | | || ||
Sbjct 532 TCACCTCCACGATCTTCCACC-GGATAAGGAGGCC-TTAGATTGGAACA-TGAGAATGAA 588
Query 464 GATTGCT-TTAGGAGCAGCAAAAGGAATT-GAGTATCTCCATGATGAGGCTGATCCTCCA 521
|| ||| | || || || ||||| ||| || | ||| |||||| |||| | |||||
Sbjct 589 AATAGCTGCT-GGTGCGGCGAAAGG-ATTGGAATTTCTACATGATAAGGCAAACCCTCCG 646
Query 522 GTGATTTACCGAGATCTTAAATCGTCAAATATATTACTTGACCCA-GAATACGTTGCGAA 580
|| ||||| ||||| |||| || ||||| || ||||| || | | | | | ||
Sbjct 647 GTTATTTATAGAGATTTTAAGTCATCAAACATTTTACTGGA-TGAGGGTTTCCACCCAAA 705
Query 581 A-TTATCGGA-TTTCGGTTTAGC-AAAGCTAGGTCCTGTTGGAGACACA-CTACATGTGT 636
| || || || ||| || || || ||| || || || ||||||| | || ||||| |
Sbjct 706 ACTT-TCTGATTTTGGGCTT-GCTAAA-CTGGGACCAACGGGAGACAAATCT-CATGTCT 761
Query 637 CTTCCCGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAATAT-CAAAGAACTGG-CTA 694
| | ||||||||||||||||||||||||||||||| ||||| ||| || | || | |
Sbjct 762 CCACTAGAGTTATGGGAACTTATGGTTATTGTGCTCCCGAATACGCAATGA-CGGGACAA 820
Query 695 TCTAACAAATAAA-TCAGATGTCTACAGCTTTGG 727
| | ||| |||| |||||||| ||||| |||||
Sbjct 821 T-TGACAG-TAAAATCAGATGTATACAGTTTTGG 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5