BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24800.1
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479998 jgi|Araly1|479998|fgenesh2_kg.3__2699__AT3G24800.1 1958 0.0
> Ahg479998 jgi|Araly1|479998|fgenesh2_kg.3__2699__AT3G24800.1
Length=1451
Score = 1958 bits (1060), Expect = 0.0
Identities = 1269/1365 (93%), Gaps = 33/1365 (2%)
Strand=Plus/Plus
Query 108 tctctctctctctctctctctctctctTGCGATAACAATGGCCGAAACTATGAAAGATAT 167
||||||| ||||||||||||| ||| ||| ||||||||||||| || ||||||| |||||
Sbjct 70 TCTCTCTTTCTCTCTCTCTCT-TCTTTTGTGATAACAATGGCCCAACCTATGAACGATAT 128
Query 168 TACGATGAAGAACGATGAATCACAGGAAGAAGAAATCCCCGATCAATTTCTCTGCTGCGT 227
|||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 129 TACGGTGAAGAACAATGAATCACACGAAGAAGAAATCCCCGATCAATTTCTCTGCTGCGT 188
Query 228 TTGCCTGGAACTTCTTTACAAGCCAATTGTGTTATCTTGTGGTCATCTATCATGTTTTTG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TTGCCTGGAACTTCTTTACAAGCCAATTGTGTTATCTTGTGGTCATCTATCATGTTTTTG 248
Query 288 GTGCGTACATAAGTCCATGAATGGCTTTCGTGAGTCTCATTGTCCGATATGTAGAGACCC 347
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 249 GTGTGTACATAAGTCCATGAATGGCTTTCGCGAGTCTCATTGTCCGATATGTAGAGACCC 308
Query 348 GTATGTTCACTTTCCCTCTGTGTGCCAGAAGCTTTATTTTCTGTTAAAGAAGATGTACCC 407
||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 309 GTATGTTCACTTTCCGTCTGTGTGCCAGAAGCTTCATTTTCTACTGAAGAAGATGTACCC 368
Query 408 ACTT-GCTCATAAGAAGAGAGAAGAACAAGTTTTAAAGGAAGAGCAAGAACGAGAATGTT 466
| || || |||||||||||||||||||||||| |||||||||| ||||||| ||| ||||
Sbjct 369 A-TTAGCGCATAAGAAGAGAGAAGAACAAGTTCTAAAGGAAGAACAAGAACTAGATTGTT 427
Query 467 TTTCTCCTCAGATTGATCTTGTTTT-G--G------A---T-----T-TGTCTGTGTGTA 508
||||||||||||||||| ||||||| | | | | | ||||||| ||||
Sbjct 428 TTTCTCCTCAGATTGATGTTGTTTTGGATGAATCAAAGGTTAAGGATGTGTCTGTATGTA 487
Query 509 GTGGAGATTCTCTCAATGTCTCTGATAAACAGAAGGTGGAAGAGTGTTCGAATGCAGCGA 568
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 488 GTGGAGATTCTCTAAATGTCTCTGATAAACAGAAGGTGGATGAGTGTTCGAATGCAGCGA 547
Query 569 ACTTATTATCTAGTTCATCAAGTAGAGGTGACATTCCATGTATCCCCAAAAATCAAGAAC 628
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 548 ACTTATTATCTAGTTCATCAAGTAGAGGTGGCAGTCCATGTATCCCCAGCAATCAAGAAC 607
Query 629 CCACAGATGCA-AAAGCTCTTAATGTTCATGAAAATGAATTACTTAAGGATAACAAAGTC 687
||||||||||| ||| ||||||| |||||||| |||||||||| |||| |||||||||||
Sbjct 608 CCACAGATGCACAAA-CTCTTAACGTTCATGAGAATGAATTACCTAAGAATAACAAAGTC 666
Query 688 AGTAAGCAGATTTCGAAAGATGATTTGCTCTGTTCAGCATGTAAGGAGCTGCTTGTACGA 747
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 667 AGTAATCAGATTTCGAAAGATGATTTGCTCTGTTCAGCATGTAAGGAGCTACTTGTGCGA 726
Query 748 CCCGTAGTTCTCAATTGCGGACATGTGTATTGTGAAGGATGTGTAGTAGATATGGCTGAA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CCCGTAGTTCTCAATTGCGGACATGTGTATTGTGAAGGATGTGTAGTAGATATGGCTGAA 786
Query 808 GAAAGCGAAAAGATCAAATGTCAAGAGTGTAATGTTTGTGACCCAAGAGGATTTCCAAAA 867
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 787 GAAAGCGAAAAGATCAAATGTCTAGAGTGTAATGTTTGTGACCCAAGAGGATTTCCAAAA 846
Query 868 GTTTGTTTGATTCTTGAACAGCTTTTGGAGGAAAACTTTCCTGAAGAATACAATTCAAGA 927
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 847 GTTTGTTTGATTCTTGAACAGCTTTTGGAGGAAAATTTTCCTGAAGAATATAAATCAAGG 906
Query 928 AGC-AGTAAGG-TTCAGAAAACGCTCGCCCATAATAGCAAAGGAAATATTCAAAGCTATC 985
| | ||| || ||||||||| ||| ||||||||||||||||||||| |||||||| |||
Sbjct 907 A-CAAGT-GGGATTCAGAAAAGGCTTGCCCATAATAGCAAAGGAAATTTTCAAAGCCATC 964
Query 986 TCAAAGAAGGCCCGTCCTTATCAAACGACAATAACAATGATGATCCCTGGTTGGCAAACC 1045
||||||||||||| || |||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 965 TCAAAGAAGGCCCATCGTTATCAAACGACAACAACGATGATCTTCCCTGGTTGGCAAACC 1024
Query 1046 CTGGATCAAATGTTCACTTTGGAGCTGGTTGTGATTCTTGTGGGGTGTATCCAATCATAG 1105
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1025 CTGGATCAAATGTTCACTTTGAAGCTGGTTGTGATTCTTGTGGAGTGTATCCAATCATAG 1084
Query 1106 GGGATCGATACAGATGCAAAGACTGCAAGGAGGAAATTGGGTATGACCTTTGCAAAGACT 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GGGATCGATACAGATGCAAAGACTGCAAGGAGGAAATTGGGTATGACCTTTGCAAAGACT 1144
Query 1166 GTTACGAGACTCCTTCGAAAGTTCCAGGGAGATTCAACCAGCAACACACTCCTGACCACA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GTTACGAGACTCCTTCGAAAGTTCCAGGGAGATTCAACCAGCAACACACTCCTGACCACA 1204
Query 1226 GGCTTGAGCTTGC-ACGGTCTCCTCAGGTTCTGATCAATTTCAATTCTATCGGTATCCTT 1284
|||||||||| || | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 GGCTTGAGCTCGCGAGGG-CTCCTCAGGTTCTGATCAATTTCAATTCTATCGGTATCCTT 1263
Query 1285 CTCGGACCC--GT-TATCTCAAATGAAGGCATGGATACAGATGAAGGCGAGGAAGGGCCT 1341
||||||||| | |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1264 CTCGGACCCTCGGATATCTCAACTGAAGCCATGGATACAGATGAGGGCGAGGAAGGGCCT 1323
Query 1342 CCTGGTTCTTCTAATGAGTCATCAAGCACAGAATGAAATAGCAGTCAAGTATTAATGCAT 1401
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CGGGGTTCTTCTAATGAGTCACCAAGCACAGAATGAAATAGCAGTCAAGTATTAATGCAT 1383
Query 1402 ATGCTTTCGCTTTGTGTTTGCGTTTGTTATTGTATTTATA-CTTC 1445
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1384 ATGCTTTCGCTTTGTGTTTGCGTTTGTTATTGTATTTATATCTTC 1428
Score = 156 bits (84), Expect = 5e-37
Identities = 91/94 (97%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 1 ACGGCGGTGGATATTGGCCCTTGCCGCAAAAGCAAAAGCTATCGCCACCACCGTGTCATA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACGGCGGTGGATATTGGCCCTTGCCGCAAAAGCAAAAGCTATCGCCACCACCGTTTCATA 60
Query 61 AATCTCAGAtctctctctctctctctctctctct 94
|||||||||||||||| ||||||||||||| |||
Sbjct 61 AATCTCAGATCTCTCTTTCTCTCTCTCTCT-TCT 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59192240730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5