BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24810.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319189 jgi|Araly1|319189|fgenesh1_pm.C_scaffold_3002205 734 0.0
> Ahg319189 jgi|Araly1|319189|fgenesh1_pm.C_scaffold_3002205
Length=549
Score = 734 bits (397), Expect = 0.0
Identities = 511/562 (91%), Gaps = 23/562 (4%)
Strand=Plus/Plus
Query 95 ATGGGAAAATACATTAAGAAGTCAAAAGTCGCCGGTGCCGTTTCCGTTAAGGATAAATCT 154
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct 1 ATGGGAAAATACATTAAGAAGTCAAAAGTCGCCGGAGCCATTTCCGTTAAGGATATATCT 60
Query 155 CACCCACCCGCTCTAGGTTTCCGTACCAGAGCCGCCGCCGCTAAAAACCTCGCCCTCCAC 214
|||||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 61 CACCCAACCACTCTCCGTTTCCGTACCAGAGCCGCCGCCGCGAAAAACTTCGCCCTCCAC 120
Query 215 CGTCTCCGTTCTCATTCCGACGAAGCAGACTCCTTT-AACTACCTCCAGCTCCGGAGCCG 273
|||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||
Sbjct 121 CGTCTCCGTTCTCATTCCAACGACTCAGACT-CTTTCAACTACCTCCAGCTCCGGAGCCG 179
Query 274 CCGTCTCGTGAAGCTTCCATTACTCACT-AATAC-CAGAAAACAGCAGAAGCAACAGCTC 331
||||||||||||||||||||||||| | ||||| || ||||||| | ||| |
Sbjct 180 CCGTCTCGTGAAGCTTCCATTACTC-GTCAATACTAAG-AAACAGC----TC-ACA---C 229
Query 332 ATTCCTAGTGTCAATCAATGTCAAACGAAAAACCCTAGGGCTAGTTCCGGTCCGGCGAAG 391
| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 230 A---GT-GTGTCAATCAATGTCAAACGAGAAACCCTAGGGCTAAATCCGGTCCGGCGAAG 285
Query 392 AAATTAG-AGCCGGATACGACGAC---GGAAGAAGCTTGTGGTGATAATGAGAGAATATC 447
||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 286 AAATTAGAAG-CGGAGACGACGACGATGGAAGAAGCTTGTGGTGATAATGAGAGAATATC 344
Query 448 TAGGTCTGATTGTAATTTTGGAGATAAAGGTTTTGATTTGGAATCAGAAAACAGGAGCAT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TAGGTCTGATTGTAATTTTGGAGATAAAGGTTTTGATTTGGAATCAGAAAACAGGAGCAT 404
Query 508 GATAAGTGATTCAAAATCAATACAAAGTGAGATTGAAGACTTCTTTGCTAGCGCAGAACA 567
|||||| || |||||| | ||||||||||||||||||||||||||||||| |||||| |
Sbjct 405 GATAAGAGACTCAAAAGCTATACAAAGTGAGATTGAAGACTTCTTTGCTAACGCAGAGGA 464
Query 568 GCAACAACAGAGATTCTTCATTCAAAAGTACAACTTTGACATTGTCTCGGACAATCCATT 627
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GCAACAACAGAGACTCTTCATTCAAAAGTACAACTTTGACATTGTCTCGGACAATCCATT 524
Query 628 GCCTGGACGTTACGAATGGGTC 649
||||||||||||||||||||||
Sbjct 525 GCCTGGACGTTACGAATGGGTC 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5