BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24820.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480000 jgi|Araly1|480000|fgenesh2_kg.3__2701__AT3G24820.1 926 0.0
> Ahg480000 jgi|Araly1|480000|fgenesh2_kg.3__2701__AT3G24820.1
Length=759
Score = 926 bits (501), Expect = 0.0
Identities = 551/576 (96%), Gaps = 0/576 (0%)
Strand=Plus/Plus
Query 3 AGGATCAGCAATGAATATAGCTTCGAGGATTCGACGAAGTTTTTTAAGAGAGAAGAAGGA 62
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AGGATCAGCAATGAATATAGCTTCGAGGATTCGACGAAGTTTTTTCAGAGAGAAGAAGGA 60
Query 63 ATCTTCAGATGGGAATAGCTTGAAGAATGGATCGAGTGTTAAGGAAGAAGGTAAAGATGA 122
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATATTCCGATGGGAATATCTTGAAGAATGGATCGAGTGTTAAGGAAGAAGGTAAAGATGA 120
Query 123 GATTTTGGGAGTTACTGATGAGTTAATCGATCATGTCAGATCCTTCACCATTGATACGTT 182
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 121 GATTTTGGGAGTTACTGATGAATTAATCGATCATGTCAGATCTTTCACCATTGATACGTT 180
Query 183 TAAGAACTTCTCTCTGGAAGATGAAGAAGAAGAAGTATCTGTGAATCCTTTGGGAGATGA 242
||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 TAAGAACTTTTCTCTTGAAGATGAAGAAGAAGAAGTATCTGTGAGTCATTTGGGAGATGA 240
Query 243 AGATAATGGAATGAGTTCATCTGCAAATGTGAAGAAGGATTTGTCTGATTGGCAGGAGAA 302
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 241 AGATAATGGAATGAGTTCGTCTGTGAATGTGAAGAAGGATTTGTCTGATTGGCAAGAGAA 300
Query 303 ACACGCGGTTCTCGTGTTATCGAAATCGAAGGAACTCTCACAGTTGAGATTCAAGTTATG 362
|||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 301 ACACGCGGTTCTTGTCTTATCGAAATCTAAGGAACTCTCACAGCTGAGATTCAAGTTATG 360
Query 363 CCCGCGAGTTTTAAAGGAACATCAGTTTTGGAGGATATATTTCCAGCTTGTGAGGAAGAT 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CCCGCGAGTTTTAAAGGAACATCAGTTTTGGAGGATATATTTCCAGCTTGTGAGGAAGCT 420
Query 423 TGTGGCAAAATATGAGGTGCTAGCAATCCAACAGGCTCAAATCAGGAGGATGGCCATGGA 482
||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 421 TGTGGCAAAGTATGAGGTGCTAGCAATCCAACAGGCTAAAATAAGGAGGATGGCCATGGA 480
Query 483 AGACAGTAAAACTTCTGAAAGCAAGGGTGTATATGAAGTTGAAATGTCAGAAACAAAGCA 542
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 481 AGACAGTAAAACTTCTGAAACCAAGGGTGTATATGAAGTTGAAATGTCAGAAACAAAACA 540
Query 543 AAGGTTGAGTACAGGACCTGCAACTCCGTGAAGCTT 578
|||||||||||||||||| |||||||||||||||||
Sbjct 541 AAGGTTGAGTACAGGACCAGCAACTCCGTGAAGCTT 576
Score = 161 bits (87), Expect = 6e-39
Identities = 124/140 (89%), Gaps = 9/140 (6%)
Strand=Plus/Plus
Query 693 GGTGACAAAACCAAGAAGGTTTTGATTCTTCAGAGATGTAAATGATCATGTGAATTTAGT 752
||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| |
Sbjct 628 GGTGACAAAACCAAGAAGGTTTTGATTCTACGGAGGTGTAAATGATCATGTGA-TTT--T 684
Query 753 ACTAGTATCAGACAT-AACACAGTGGTCTTAAACGCTTTGTACTAATAAGAATAGACATC 811
||||||||||| || ||||| ||||||||||||||||| ||| |||||| ||||||
Sbjct 685 ----GTATCAGACATGAA-ACAGTAGTCTTAAACGCTTTGTAGTAACAAGAATCGACATC 739
Query 812 ATTATTTAATGTTTTGATTC 831
||||||||||||||||||||
Sbjct 740 ATTATTTAATGTTTTGATTC 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5