BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24830.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930609 jgi|Araly1|930609|scaffold_303066.1 1094 0.0
Ahg915111 jgi|Araly1|915111|Al_scaffold_0009_80 608 2e-173
Ahg494941 jgi|Araly1|494941|fgenesh2_kg.8__757__AT5G48760.1 551 3e-156
Ahg478031 jgi|Araly1|478031|fgenesh2_kg.3__732__AT3G07110.2 544 6e-154
> Ahg930609 jgi|Araly1|930609|scaffold_303066.1
Length=661
Score = 1094 bits (592), Expect = 0.0
Identities = 641/664 (97%), Gaps = 5/664 (1%)
Strand=Plus/Plus
Query 62 GGCGAATTCGAATCGAGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTG 121
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 GGCGAAATCGAAGCGAGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGG 60
Query 122 TTGACGCACGTCACCATATGTGTGGTCGTCTTGCTTCGATCATAGCTAAAGAGTTGCTCA 181
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 61 TTGACGCACGTCACCATATGTGTGGTCGTCTTGCTTCGATCACAGCTAAAGAATTGCTCA 120
Query 182 ATGGACAGAGTGTTGTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTC 241
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGACAGAGTGTTGTCGTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTC 180
Query 242 GTCAGAAGATGAAGTACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATG 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GTCAGAAGATGAAGTACATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATG 240
Query 302 GTCCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTC 300
Query 362 CACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTAC 421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTTTTTGAGGGAGTAC 360
Query 422 CACCTCCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACCTCCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGC 420
Query 482 TTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGT-TTGTCTTCTGAAGTTGGCTGGAAC 540
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 TTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGTCTT-TCTTCTGAAGTTGGCTGGAAC 479
Query 541 CATTACGATACCATCAAGGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTAT 600
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 480 CATTATGATACCATTAAGGAGCTTGAGGTGAAAAGAAAGGAGAGGTCACAAGCTGTGTAT 539
Query 601 GAGCGTAAGAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAA 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGCGTAAGAAGCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAA 599
Query 661 CTTGGATCCCAGCTCGATGTTCTTGCATCGATCAAGTACTGAAGAAAATCAGCATCTATC 720
||||||||||||||||||||||||||| |||| |||||||||| || ||| ||||||||
Sbjct 600 CTTGGATCCCAGCTCGATGTTCTTGCACCGATTAAGTACTGAA-AA--TCATCATCTATC 656
Query 721 TTTT 724
||||
Sbjct 657 TTTT 660
> Ahg915111 jgi|Araly1|915111|Al_scaffold_0009_80
Length=621
Score = 608 bits (329), Expect = 2e-173
Identities = 521/613 (85%), Gaps = 16/613 (3%)
Strand=Plus/Plus
Query 82 ATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCATATG 141
||||||||||||||||| ||||| | ||||| || || || |||| || ||||| |||
Sbjct 1 ATGGTGTCTGGGTCAGGAATATGCGCTAAGCGCGTGGTCGTAGACGGGCGACACCACATG 60
Query 142 -TGTGGTCGTCTTGCTTCGATC-A-TAGCTAAA-GAGTTGCTCAATGGACAGAGTGTTGT 197
| ||||||||| ||||| | | | | || ||| ||||| ||||| ||||||| || ||
Sbjct 61 CT-TGGTCGTCTGGCTTCCA-CAACT-GC-AAAGGAGTTACTCAACGGACAGAAAGTGGT 116
Query 198 TGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGAAGTA 257
|||||||||||||| ||||||||| | || || ||||||||||| || |||||||||||
Sbjct 117 GGTTGTCCGATGTGAAGAGATTTGTCTCTCAGGAGGTTTGGTTCGACAAAAGATGAAGTA 176
Query 258 CATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCA-TTTCC 316
|||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||| |
Sbjct 177 CATGAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTT-C 235
Query 317 GTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAGC 376
||||||| || |||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 236 GTGCTCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGC 295
Query 377 GTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTT-GAGGGAGTACCACCTCCTTATGAC 435
||||||||||||| ||||| || |||||||| ||| |||||| | |||||||| |||||
Sbjct 296 GTGGTGCTGCTGCACTTGCTCGCTTGAAGGT-TTTCGAGGGAATCCCACCTCCATATGAT 354
Query 436 AAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAG-GCTGGTCA 494
||| | ||||||||||| || ||||||||||| ||||| ||||| |||||| | ||| ||
Sbjct 355 AAGATTAAGAGAATGGTTATCCCTGATGCTCTTAAGGTTTTGAGACTTCAGAG-TGGCCA 413
Query 495 CAAGTACTGCTTGTTGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCAT 554
|||||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||||
Sbjct 414 CAAGTACTGCTTATTGGGACGTCTATCGTCTGAGGTTGGCTGGAACCATTACGATACCAT 473
Query 555 CAAGGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTT-TGTATGAGCGTAAGAAGC 613
|| || |||||| ||||||||||| | || |||| | ||||||||||||||||||
Sbjct 474 TAAAGAACTTGAGACAAAGAGAAAGGAAAAATCGCAAG-TGGTGTATGAGCGTAAGAAGC 532
Query 614 AACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATCCCAGC 673
|||||| |||||||||||| ||||| || |||||||| || ||||| || ||||| ||||
Sbjct 533 AACTCAACAAGCTCAGGGCCAAGGCAGAAAAGGTTGCGGAAGAGAAGCTCGGATCACAGC 592
Query 674 TCGATGTTCTTGC 686
|||||||||||||
Sbjct 593 TCGATGTTCTTGC 605
> Ahg494941 jgi|Araly1|494941|fgenesh2_kg.8__757__AT5G48760.1
Length=728
Score = 551 bits (298), Expect = 3e-156
Identities = 526/635 (83%), Gaps = 20/635 (3%)
Strand=Plus/Plus
Query 78 GAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCA 137
||| |||||||| || ||||||||||| || ||||| || || || ||||| || |||||
Sbjct 2 GAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTAGACGCGCGCCACCA 61
Query 138 TATG-TGTGGTCGTCTTGCTTCGATCATAGCTAAAGAG-TTGCTCAATGGACAGAGTGTT 195
||| | |||||||||||| || |||| ||||||||| || |||||||| |||| |||
Sbjct 62 CATGCT-TGGTCGTCTTGCGTCAATCACCGCTAAAGAGCTT-CTCAATGGCCAGAAAGTT 119
Query 196 GTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGAAG 255
|| ||||||| || || |||||||| | || ||||| | ||||||||||| ||||||
Sbjct 120 GTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGTGGACTCGTTCGTCAGAAAATGAAG 179
Query 256 TACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCATTTC 315
|||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 180 TACATGAGATTCCTTCGCAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCACTTC 239
Query 316 CGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAG 375
|||||||| || || |||||||||||||| ||||| || |||||||||||||| || |||
Sbjct 240 CGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAAACGAAG 299
Query 376 CGTGGTGCTGCTGCTCTT-GCACGTTTGAAGGTGTTTGAGGGAGTACC-ACCTCCTTATG 433
||||| |||||||| || || ||||||||||| ||||| || || || || ||| ||||
Sbjct 300 CGTGGAGCTGCTGCA-TTAGCTCGTTTGAAGGTATTTGAAGGTGTTCCTAC-TCCGTATG 357
Query 434 ACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGGTC 493
| ||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 358 ATAAGATCAAGAGGATGGTTATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTC 417
Query 494 ACAAGTACTG-CTTGTTGGGACGT-TTGTCTTCTGAAGTTGGCTGGAACCATTACGATAC 551
| || ||||| ||| ||||| ||| || || ||||||||||| |||||||||||||||||
Sbjct 418 ATAAATACTGTCTT-TTGGGTCGTCTT-TCGTCTGAAGTTGGGTGGAACCATTACGATAC 475
Query 552 CATCAAGGAGCTTGAGGTGAAGAG-AAAG-GAGAGGTCACAA-GCTTTGTATGAGCGTAA 608
|||||||||||| ||| ||||| |||| ||||| ||| | | ||| | ||||| ||
Sbjct 476 CATCAAGGAGCTGGAGACAAAGAGGAAAGAGAGAGCTCA-AGTGGTTT--ACGAGCGAAA 532
Query 609 GAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATC 668
||||||||| | ||| || || | ||||| ||||||||||| || ||||| || ||| |
Sbjct 533 GAAGCAACTTAACAAACTTAGAGTTAAGGCTGAGAAGGTTGCTGAAGAGAAGCTCGGAGC 592
Query 669 CCAGCTCGATGTTCTTGCATC-GATCAAGTACTGA 702
||||||||| |||||||| | | |||||||||||
Sbjct 593 ACAGCTCGATATTCTTGCACCAG-TCAAGTACTGA 626
> Ahg478031 jgi|Araly1|478031|fgenesh2_kg.3__732__AT3G07110.2
Length=796
Score = 544 bits (294), Expect = 6e-154
Identities = 529/640 (83%), Gaps = 25/640 (4%)
Strand=Plus/Plus
Query 78 GAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCA 137
||| ||||||||||| ||||| || || | ||||| || || ||||| || ||||||||
Sbjct 69 GAAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGAGTGGTGGTTGATGCTCGTCACCA 128
Query 138 TATGTGT-GGTCGTCTT-GCTTCGATCATAGCTAAA-GAGTTGCTCAATGGACAG-AGTG 193
||| | ||||| ||| || ||||| | || ||| ||| |||||||||| ||| || |
Sbjct 129 CATG-CTAGGTCG-CTTGGCCTCGATTGTGGC-AAAGGAGCTGCTCAATGGCCAGAAG-G 184
Query 194 TTGTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGG-TTTGGTTCGTCAGAAGATG 252
|||| |||||||| || |||||||||||| | || ||||| || |||||||||||||||
Sbjct 185 TTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGTGGACTT-GTTCGTCAGAAGATG 243
Query 253 AAGTACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCAT 312
||||||||||||||||| | || || |||||||||||||||||||| || ||||||||
Sbjct 244 AAGTACATGAGGTTTCTCCGCAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCAC 303
Query 313 TTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACC 372
||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 304 TTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACT 363
Query 373 AAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACC-ACCTCCTTA 431
|||||||| ||| ||| ||||| || |||||||| ||||| ||||| || || ||| ||
Sbjct 364 AAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTAC-TCCATA 422
Query 432 TGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGG 491
||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 423 TGACAAGATCAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGG 482
Query 492 TCACAAGTACTG-CTTGTTGGGACGT-TTGTCTTCTGAAGTTGGCTGGAACCATTACGAT 549
||||| ||||| || |||||| || || ||||||||||| || |||||||| |||||
Sbjct 483 CCACAAATACTGTCT-GTTGGGTCGCCTT-TCTTCTGAAGTCGGATGGAACCACTACGAC 540
Query 550 ACCATCAAG--G-AGCTTGAGGTGAAGAGAAAGGAGAG-GTCACAAGCT-TTGTATGAGC 604
||||||||| | |||| ||| ||||||||||| || | | |||| | || |||||
Sbjct 541 ACCATCAAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAG-CTCAAGTTGTT-TATGAAA 598
Query 605 GTAAGAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTG 664
| ||||||||||| | ||| ||||| || ||||||||||||||||| || ||||| ||||
Sbjct 599 GAAAGAAGCAACTTAACAAACTCAGAGCCAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTG 658
Query 665 GATCCCAGCTCGATGTTCTTGCATC-GATCAAGTACTGAA 703
|||| || | || ||||||||| | | ||||||||||||
Sbjct 659 GATCTCAATTGGAAGTTCTTGCACCAG-TCAAGTACTGAA 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5