BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24840.1
Length=2260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480002 jgi|Araly1|480002|fgenesh2_kg.3__2703__AT3G24840.1 2959 0.0
> Ahg480002 jgi|Araly1|480002|fgenesh2_kg.3__2703__AT3G24840.1
Length=1919
Score = 2959 bits (1602), Expect = 0.0
Identities = 1823/1927 (95%), Gaps = 25/1927 (1%)
Strand=Plus/Plus
Query 215 GTTTTACATTATTATCATCTGTTTCTTTGA-TAAAAACAAATGCCAGCATTAGGTGAGAT 273
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 1 GTTTTACATTATTATCATCTGTTTC-TTGATTAAAAACAAATGCCAGCGTTAGGTGAGAT 59
Query 274 ACTTTTGGTTCCAGAAACTGATAAAGGAAAGAGTAAAGATTACATTGAGGTTTCAGAGGA 333
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 60 ACTTTTGGTTCCAGAAACTGATAAAGGAAAGAGTAAAG---ACATTGAGGTTTCAGATGA 116
Query 334 TGAGAAGATTACAAGAACTCGTTCTAGATCTTTAAAGAAGAAAGCTATTAAAGCTTCGAA 393
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGAAAAGATTACAAGAACTCGTTCTAGATCTTTAAAGAAGAAAGCTATTAAAGCTTCGAG 176
Query 394 TAAATTGACACATAGTTTAAGGAAAAGAGGGAAGCGTGTCGCTGATCAATATGCACCAAT 453
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 177 TAAATTGACACATAGTTTAAGGAAACGAGGGAAGCGTGTAGCTGATCAATATGCACCAAT 236
Query 454 TGTGATTGAGGATGTGAGAGATGAAGAAGAGGAGAAAGCAGTGAATGTATTTAGAAAAGC 513
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGTGATTGAGGATGTGAGGGATGAAGAAGAGGAGAAAGCAGTGAATGTATTTAGAAAAGC 296
Query 514 TTTGGTTTCTTTAGATTTGCTTCCACCACGGCACGATGATTATCATACCATGTTGAGATT 573
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 297 TTTGGTTTCTTTAGATTTGCTTCCACCTCGGCACGATGAGTATCATACAATGTTGAGATT 356
Query 574 CTTGAAGGCGAGGAGGTTTGATCTTGAGAAAACAGTTCAGATGTGGGAAGAAATGTTAAA 633
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 357 CTTGAAGGCGAGGAGATTTGATCTTGACAAAACTGTTCAGATGTGGGAAGAAATGTTAAA 416
Query 634 GTGGAGGAAAGAGAATGGAGTTGATACTATAATACAGGATTTTGTTTATGATGAATATGA 693
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 GTGGAGGAAAGAGAATGGAGTTGATACTATAATGCAGGATTTTGTTTATGATGAATATGA 476
Query 694 AGAAGTACAACAATACTATCCACATGGTTATCATGGTGTAGATAGAGAGGGACGGCCTGT 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 AGAAGTACAACAATACTATCCACATGGTTATCATGGTGTAGATAGAGAGGGACGACCTGT 536
Query 754 TTACATTGAACGGCTTGGTAAAATTGACCCCGGCAAGCTAATGAAGGTTACCACATTGGA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTACATTGAACGGCTTGGTAAAATTGACCCCGGCAAGCTAATGAAGGTTACCACATTGGA 596
Query 814 GCGGTTCTTGAGATATCATGTACAGGGTTTTGAAAAGACTTTTTCTGAGAAGTTTCCAGC 873
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 GCGTTTCTTGAGATATCATGTACAGGGTTTTGAAAAGACTTTTTCGGAGAAGTTTCCAGC 656
Query 874 TTGTTCGATCGCAGCAAAGAGGCACATAAATTCTTCGACAACCATAATAGATGTGCATGG 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTGTTCGATCGCAGCAAAGAGGCACATAAATTCTTCGACAACCATAATAGATGTGCATGG 716
Query 934 AGTGAGCTGGATGAGCTTTAGAAAATTAGCTCAGGACCTTGTAATGCGAATGCAGAAAAT 993
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 AGTGAGTTGGATGAGCTTTAGAAAATTAGCTCAGGACCTTGTAATGCGAATGCAAAAAAT 776
Query 994 TGACGGTGACAACTATCCTGAGACATTGAATCAGATGTACATTATTAATGCTGGAAACGG 1053
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGATGGTGACAACTATCCTGAGACATTGAATCAGATGTACATTATTAATGCTGGAAACGG 836
Query 1054 ATTCAAGCTTGTTTGGAACACCGTGAAAGGCTTTCTCGACCCGAAAACTACTTCTAAGAT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTCAAGCTTGTTTGGAACACCGTGAAAGGCTTTCTCGACCCGAAAACTACTTCTAAGAT 896
Query 1114 ACATGTTTTGGGAAACAAATATCGCAGTCACCTTCTTGAAATTATAGATCCAAGTGAGCT 1173
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 ACATGTTTTGGGAAACAAATATCGCAGTCACCTTCTTGAGATTATAGATCCAAGTGAGCT 956
Query 1174 TCCTGAGTTTCTGGGTGGAAATTGCAAGTGTGCACATGAAGGTGGGTGTATGCGATTCAA 1233
||| |||||| |||| |||||||| | |||||| |||||||||||||||||||||||||
Sbjct 957 TCCAGAGTTTATGGGAGGAAATTGTACCTGTGCAAATGAAGGTGGGTGTATGCGATTCAA 1016
Query 1234 CAAGGGGCCTTGGAACGACCCGGAGATAATGAAACTAGTGCGCTCGAGAGATGCAATGTA 1293
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAAGGGGCCTTGGAATGACCCGGAGATAATGAAACTAGTGCGCTCGAGAGATGCAATGTA 1076
Query 1294 CAAACCAAAAGAAATGGGGCTTCTGGAGAATGGGGAAGTAGCTAAATTATTTTCCTTACG 1353
|||| |||||| ||| ||||| |||||||| ||||||||||||||||||||| | ||||
Sbjct 1077 CAAAACAAAAGCAATAGGGCTCCTGGAGAACGGGGAAGTAGCTAAATTATTTGCGTTACC 1136
Query 1354 GCATGTGAACACAGATATGTCATCACCTGATGGAGGCCATGTTAGGGAGAGAGAATCGCA 1413
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1137 GCATGTGAACACAGAGATGTCATCACCTGATGGAGGCCAAGTTAGGGAGAGAGAGTCACA 1196
Query 1414 TCCTGAACATGACAAACGTGCTCAGCTGAGCAATCAAGCTGAAGCAGTTGGTGTTGGGAG 1473
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTCTGAACAGGACAAACGCGCTCAGCTGAGCAATCAAGCTGAAGCAGTTGGTGTTGGGAG 1256
Query 1474 AATGGAACAGTCTGATTCAACAAGTCCATTACCGAATAATCTGGCAGTAGAAAGGAGTTT 1533
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1257 AATGGAACAGTCTGATTCAACAAATCCATTACCGAATAATCTGACAGTAGAAAGGAGTTT 1316
Query 1534 AACGACCTCTCTTCAGAAAGTTGCAAGTTTTTTGGCCCGTTTTATCCTCCAACTTCTTGG 1593
|| ||||||||||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct 1317 AAAGACCTCTCTTCAGAAAGTTGCAAGTTTGTTGGCTCGGTTTATCGTCCAACTTCTTGG 1376
Query 1594 CAGTCTATGTCTCATGTTCCGGATCTTGGGAAGACTTGTAAATAAGCAACCAGAGAACCA 1653
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CAGTCTATTTCTCATGTTCCGGATCTTGGGAAGACTTGTAAATAAGCAACCAGAGAACCA 1436
Query 1654 ATTGAGACCGGAGTTAAGTGTTTCAGTCTCCCAGCAACAAGTTCCTCCTCCTCAGGT-C- 1711
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1437 ATTGAGACCGGAGTTAAGGGTTTCGGTCTCCCAGCAACAAGTTCCTCCTCCTCAGGTGCA 1496
Query 1712 --------C-----ATCCATGTTGGCTGAGGTTGCAAAATCTGGAGACCATGGTCACAGT 1758
| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1497 AAGAGAGTCTGTCCATCCATGTTGGCTGAGGTTGCAAAATCTAGAGACCATGGTCACAGT 1556
Query 1759 TTTGTGTGATAAACCCTCAAGTATTCCTCAGGAAAAAGAAGATATACTTCGTGATTCATT 1818
||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1557 TTTATGTGATAAACCCTCAAGCATTCCTCAAGATAAAGAAGATATACTTCGTGATTCATT 1616
Query 1819 AGACCGTATCAAATCCATTGAGCAAGATTTGCAGAAGACAAAGAAGGCGCTCTTTTTGAC 1878
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1617 AGACCGCATCAAATCCATTGAGCAAGATTTACAGAAGACAAAGAAGGCGCTCTTTTTGAC 1676
Query 1879 CGCGTCAAAACAAATAGAACTCGCTGAGTGTTTCGAAAACTTGAAGGAGAGCAGTTCAAC 1938
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct 1677 CGCGTCAAAACAAATAGAACTCGCTGAGTGTTTGGAAAACTTAAAGGAAAGCAGCTCAAC 1736
Query 1939 GGGAATGCGATCATGCTGGCCAAGACACTGCAGAAACTTTCAAGCTGAAACCTGATTTGC 1998
||||||||| ||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct 1737 GGGAATGCGTTCATGCTGGCCAAGACACTGCAGAAACTTCCAAGCAGACACCTAATTTGC 1796
Query 1999 AGAATAAATTTATCTTCGGATCTCATATCCGAAGTCTGCATAGCTACTACTTCACCCACT 2058
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1797 AGAATAAATGTATCTTCGGATCTCATATTCGAAGTCTGCATAGCTACTAATTCACCCTCC 1856
Query 2059 TAACCATATTA-CAGATGGtatatatatataAAGGCAAAATGGTAACAGGAAGTGAAATT 2117
|||| | || |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1857 -AACCTTTTTTTCAGATGGTATATAT-TA-AA-GGCAAAATGGTAACAGGAAGTGAAATT 1912
Query 2118 GAAGAGG 2124
|||||||
Sbjct 1913 GAAGAGG 1919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85093607330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5