BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24850.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1 983 0.0
Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791 905 0.0
Ahg930567 jgi|Araly1|930567|scaffold_303024.1 869 0.0
Ahg930645 jgi|Araly1|930645|scaffold_303102.1 549 1e-155
Ahg497170 jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1 518 4e-146
Ahg930646 jgi|Araly1|930646|scaffold_303103.1 217 2e-55
Ahg930649 jgi|Araly1|930649|scaffold_303106.1 141 1e-32
Ahg930632 jgi|Araly1|930632|scaffold_303089.1 122 4e-27
> Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1
Length=817
Score = 983 bits (532), Expect = 0.0
Identities = 634/684 (93%), Gaps = 4/684 (1%)
Strand=Plus/Plus
Query 397 GAGGCGAAAACCCTACAAAACCCTAGTTCTGAACT-TTGTTCATCACTCGTACTCTCTGA 455
||| ||||||| ||||||||||||||||||||| | |||||| ||||||||||||| |||
Sbjct 136 GAGACGAAAACACTACAAAACCCTAGTTCTGAA-TCTTGTTCTTCACTCGTACTCTTTGA 194
Query 456 TTACAAGATGGCTGAGTCGGAAAAGATGGAGACGAAAGACCCACCAAACCCTCTGTCTTT 515
|||||||||||||||||| || |||| |||||||||||||||| |||||||||||||||
Sbjct 195 TTACAAGATGGCTGAGTCCGAGAAGACAGAGACGAAAGACCCACTAAACCCTCTGTCTTT 254
Query 516 GTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGAAACGTACCGG 575
| ||||| ||| |||||||||||||||||||||||| || |||||||||| ||||| ||
Sbjct 255 GGGCCTATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAGAGAGGAAGCGTACTGG 314
Query 576 TGGATTCAAGAAGGCAAAGGTTGCTCCTTTTCCAGGGACAGCGAGAGATACGCCTAAGTG 635
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||
Sbjct 315 TGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGAGAGAGACGCCTGAGTG 374
Query 636 GCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTGATCTTTGAGAA 695
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 375 GCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAA 434
Query 696 GACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATGCCGTTCAACAA 755
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 435 GACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAACAA 494
Query 756 CTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAGGAAGACATCAA 815
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 495 CTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCAA 554
Query 816 CAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGTA-AAGTGGG 874
|||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 555 CAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTGGG 613
Query 875 GTGTGATGTTGAAAAGATGGGAGCTGAAGAAGGAATCAGGAAAAGGAAGCTGGAACTACA 934
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 614 GTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTACA 673
Query 935 ATCTGATTTGTGGGTGGAACGATGTCGTTGAGGCTAACGGATTGAAAGAAGGCGACAACA 994
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 674 ATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGATGGCGACAACA 733
Query 995 TTAGTGTTTGGTCGTTCAGGTGTCGTGGAGTCCTTTGCTTTGCCATGGAACAGAGTAGCT 1054
||||| |||||||||| |||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 734 TTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCATGGAACAGAGTAGCT 793
Query 1055 CTTCTCTTGCTCTCTGTCTCTGCT 1078
|||| |||||||||||||||||||
Sbjct 794 CTTCCCTTGCTCTCTGTCTCTGCT 817
Score = 145 bits (78), Expect = 8e-34
Identities = 227/290 (78%), Gaps = 46/290 (16%)
Strand=Plus/Plus
Query 133 GAAGAAGAAAGCCAGAAGAGAATATTTTGTCTCTTCCCGAGAAGAAA-AAGATCGTCTTT 191
|||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 1 GAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAA-AAATAAGATCGTCTTT 59
Query 192 GGTGAAGAGACAACAAAAGCTTAATGGTGGTTTTATCTCTTTTACTTCTTCATCGCTTAT 251
|||||||||||||||||| |||||||| | || | | || |||||||||
Sbjct 60 GGTGAAGAGACAACAAAACCTTAATGG-------A-CT-TCT-AC------ATCGCTTAT 103
Query 252 CGATCTTAACCAGTTGCCGACTGATTCTGAGATCGAAGACCCACAAACCTCTGATTCCCA 311
||||||||||||||| || ||||||||||||| || ||| | |||| || | | |
Sbjct 104 CGATCTTAACCAGTTCCCTACTGATTCTGAGA--GA-GACG-A-AAACA-CT-A--C--A 152
Query 312 GATGAAAACCCTACAAAACTCTAGTTCTGAACCTTGCACTTCACTCGTACTCTTTGATTA 371
| || ||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 153 -A--AA--CCCTA----------GTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTA 197
Query 372 CAAAACGGCTGAGTCCGAGAAGATGGAGGCGAAA-ACCCTACAAAACCCT 420
||| | ||||||||||||||||| ||| ||||| |||| || |||||||
Sbjct 198 CAAGATGGCTGAGTCCGAGAAGACAGAGACGAAAGACCC-ACTAAACCCT 246
> Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791
Length=1038
Score = 905 bits (490), Expect = 0.0
Identities = 634/701 (90%), Gaps = 19/701 (3%)
Strand=Plus/Plus
Query 397 GAGGCGAAAACCCTACAAAACCCTAGTTCTGAACTTTGTTCATCACTCGTACTCTCTGAT 456
||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||
Sbjct 340 GAGACGAAAACCCTACAAAACCCTAGTTCTGAACCTTGTTCTTCACTCGTAGTCTTTGAT 399
Query 457 TACAAGATGGCTGAGTCGGAAAAGATGGAGACGAAAGACCCACCAAA-CC-------C-- 506
||||||||||||||||| || ||| |||||||||||||||| ||| || |
Sbjct 400 TACAAGATGGCTGAGTCCGAGGAGAGGGAGACGAAAGACCCAGTAAACCCTAATTTTCAA 459
Query 507 ---TC--TGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAG 561
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 460 TGTTCTTTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAG 519
Query 562 AGGAAACGTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTTTTCCAGGGACAGCGAGA 621
||||| ||||| |||||| ||||||| |||||||||||||||||| || || ||||||
Sbjct 520 AGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGA 579
Query 622 GATACGCCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAA 681
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 580 GAGGCGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAA 639
Query 682 CTGATCTTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCA 741
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 640 CTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTGAACCCAACACAGAACCGTCTCTCA 699
Query 742 ATGCCGTTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATA 801
||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 700 ATGCCTTTCAACAACTTAATCCGGAACGATTTCTTGACCTCTGTGGAGTCCAGAATCATA 759
Query 802 AAGGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGG 861
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GACAAAGACATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGG 819
Query 862 TCTGTA-AAGTGGGGTGTGATGTTGAAAAGATGGGAGCTGAAGAAGGAATCAGGAAAAGG 920
|||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 820 TCTG-AGAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGAAAAGG 878
Query 921 AAGCTGGAACTACAATCTGATTTGTGGGTGGAACGATGTCGTTGAGGCTAACGGATTGAA 980
||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 879 AAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAA 938
Query 981 AGAAGGCGACAACATTAGTGTTTGGTCGTTCAGGTGTC-GTGGAGTCCTTTGCTTTGCCA 1039
|| ||||||||||||||| |||||||||| ||||| | |||||||||| ||||||||||
Sbjct 939 AGCCGGCGACAACATTAGTCTTTGGTCGTTTAGGTG-CTGTGGAGTCCTCTGCTTTGCCA 997
Query 1040 TGGAACAGAGTAGCTCTTCTCTTGCTCTCTGTCTCTGCTAA 1080
|||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TGGAACAGAGTAGCTCTTCTCTTGCTCTCTGTCTCTGCTAA 1038
Score = 307 bits (166), Expect = 1e-82
Identities = 251/290 (87%), Gaps = 14/290 (5%)
Strand=Plus/Plus
Query 1 ATGAGTAGTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTCG 60
|||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAATATTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGAACCTGTGGTCG 60
Query 61 AAGTTCTATGGACTGGTGGATGCGGCGGTTTTGTTATATGATGAGATACAACGTCGTGGC 120
|| |||| || |||||| ||||||||||| |||||||||| ||| ||||| || |
Sbjct 61 AATTTCTTTGTACTGGTTGATGCGGCGGTAATGTTATATGA--AGA-ACAACAACGCAGT 117
Query 121 AAGATCGTATCTGAAGAAGAA-A-G---C-CAGAAGAGAATATTTTGTCTCTTCCCGAGA 174
||||| || || ||||||||| | | | ||||||||||| ||||||||||||||||||
Sbjct 118 AAGATTGTCTCCGAAGAAGAAGAAGAGACACAGAAGAGAATCTTTTGTCTCTTCCCGAGA 177
Query 175 AGAAA-AAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGTGGTTTTATCTCTTT 233
| ||| ||||||||||||||||||||||||||||||||||||||| | ||||| || | |
Sbjct 178 A-AAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG-GTTTTTAACT-TCT 234
Query 234 TACTTCTTCATCGCTTATCGATCTTAACCAGTTGCCGACTGATTCTGAGA 283
|||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 235 -ACTTCTTCATCGTTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA 283
> Ahg930567 jgi|Araly1|930567|scaffold_303024.1
Length=1079
Score = 869 bits (470), Expect = 0.0
Identities = 625/697 (90%), Gaps = 21/697 (3%)
Strand=Plus/Plus
Query 402 GAAAACCCTACAAAACCCTAGTTCTGAACT-TTGTTCATCACTCGTACTCTCTGATTACA 460
|||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||
Sbjct 362 GAAAACCCTACAAAACCCTAGTTCTGAA-TCTTGTTCTTCACTCGTACTCTTTGATTACA 420
Query 461 AGATGGCTGAGTCGGAAAAGATGGAGACGAAAGA-CC-C---ACC--AA--ACCC----T 507
||| ||||||||| || |||| |||||||||||| || | ||| || ||| |
Sbjct 421 AGACGGCTGAGTCCGAGAAGACGGAGACGAAAGACCCACTAAACCGTAATTTCCCATGTT 480
Query 508 C--TGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGA 565
| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGA 540
Query 566 AACGTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TTCCAGGGACAGCGAGAGAT 624
||||| | |||||| ||||||| |||||||||||| || || ||||||| ||| |||
Sbjct 541 AACGTTCTGGTGGAGTCAAGAAAGCAAAGGTTGCTTGTTCTT-CAGGGACGGCGCCAGAG 599
Query 625 ACGCCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTG 684
|| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 600 ACACCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCTAAAGACGCTAAACTG 659
Query 685 ATCTTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATG 744
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 660 ATCTTTGAGAAGACACTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATG 719
Query 745 CCGTTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAG 804
|| |||||||||||||||| |||||||| ||||| | || |||||||||||||||||
Sbjct 720 CCTTTCAACAACTTACTCCGCAACGATTTTTTGACACCAGTAGAGTCCAGAATCATAAAC 779
Query 805 GAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCT 864
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 780 GAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTTGATCAACGGTGT 839
Query 865 GTAAAGTGGGGTGTGATGTTGAAAAGATGGGAGCTGAAGAAGGAATCAGGAAAAGGAAGC 924
| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 840 GAAAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGC 899
Query 925 TGGAACTACAATCTGATTTGTGGGTGGAACGATGTCGTTGAGGCTAACGGATTGAAAGAA 984
||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 900 TGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAATGGATTGAAAGAG 959
Query 985 GGCGACAACATTAGTGTTTGGTCGTTCAGGTG-TCGTGGAGTCCTTTGCTTTGCCATGGA 1043
||||||||||||||| |||||||||| ||||| | ||| | |||||||||||||||||||
Sbjct 960 GGCGACAACATTAGTCTTTGGTCGTTTAGGTGCT-GTGAAATCCTTTGCTTTGCCATGGA 1018
Query 1044 ACAGAGTAGCTCTTCTCTTGCTCTCTGTCTCTGCTAA 1080
||||||||||||||| |||||||||||||||||||||
Sbjct 1019 ACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1055
Score = 331 bits (179), Expect = 6e-90
Identities = 373/457 (82%), Gaps = 51/457 (11%)
Strand=Plus/Plus
Query 1 ATGAGTAGTATGTATCACGATTAC-GATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTC 59
|||| |||| |||||||| ||| | ||||||||||||||||||||||||| ||||||||
Sbjct 21 ATGACTAGTCTGTATCACAATT-CTGATCATCTCACGGCTTCAGGGAAGGACCTGTGGTT 79
Query 60 GAAGTTCTATGGACTGGTGGATGCGGCGGTTTTGTTATATGATG-AGATACAACGTCGTG 118
||| |||| || |||||| |||||||| ||| |||||||||| | ||| ||||||||||
Sbjct 80 GAATTTCTGTGTACTGGTTGATGCGGCAGTTATGTTATATGAAGAAGA-ACAACGTCGT- 137
Query 119 GCAAGATCGTAT-C--TGAAGAAGAA-A-GC-CAGAAGAGAATATTTTGTCTCTTCCCGA 172
||||| || | | ||||||||| | || ||| ||||||| ||||||||||||||||
Sbjct 138 --AAGATTGTCTCCGAAGAAGAAGAAGAGGCACAGCAGAGAATCTTTTGTCTCTTCCCGA 195
Query 173 GAAGAAA-AAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGTGGTTT-TATCTC 230
||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 196 GAA-AAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG-GGTTTCTA-CT- 251
Query 231 TTTTACTTCTTCATCGCTTATCGATCTTAACCAGTTGCCGACTGATTCTGAGATC-GAAG 289
| | |||||||||||||||||||||||||||||||| || ||||||||||||| | |||
Sbjct 252 TCT-ACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-CAGAAC 309
Query 290 AC--CCA-CA--A------A-C--CT-C-TGATTC--C-CAGAT---GA-A--AA--CCC 322
| ||| | | | | || | || ||| | | ||| || | || |||
Sbjct 310 AAAACCATCTTCAGTTGCTATCTTCTTCATGTTTCATCGCTGATTCCGAGATGAAAACCC 369
Query 323 TACAAAACTCTAGTTCTGAACCTTGCACTTCACTCGTACTCTTTGATTACAAAACGGCTG 382
|||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 370 TACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGACGGCTG 429
Query 383 AGTCCGAGAAGATGGAGGCGAAA-ACCCTACAAAACC 418
|||||||||||| |||| ||||| |||| || |||||
Sbjct 430 AGTCCGAGAAGACGGAGACGAAAGACCC-ACTAAACC 465
> Ahg930645 jgi|Araly1|930645|scaffold_303102.1
Length=475
Score = 549 bits (297), Expect = 1e-155
Identities = 403/451 (89%), Gaps = 19/451 (4%)
Strand=Plus/Plus
Query 443 TCGTACTCTCTGATTACAAGATGGCTGAGTCGGAAAAGATGGAGACGAAAGA-CC-C--- 497
||||| ||| ||||||||||||||||||||| || ||| |||||||||||| || |
Sbjct 1 TCGTAGTCTTTGATTACAAGATGGCTGAGTCCGAGGAGAGGGAGACGAAAGACCCACAAA 60
Query 498 A-CC--A-----AA-C-CCTCTGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGAC 547
| || | || | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATCCTAATTCCCAATCTTCTCTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGAC 120
Query 548 GTGCTGTGGAAGAGAGGAAACGTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TT 606
||||||||||| ||||||| |||| |||||| ||||||| |||||||||||||||| ||
Sbjct 121 GTGCTGTGGAACAGAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTT 180
Query 607 CCAGGGACAGCGAGAGATACGCCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAA 666
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 -CAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAA 239
Query 667 GCCAAAGATGCTAAACTGATCTTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACA 726
| ||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 240 GTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACA 299
Query 727 CAGAACCGTCTCTCAATGCCGTTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTG 786
|||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||
Sbjct 300 CAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTG 359
Query 787 GAGTCCAGAATCATAAAGGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATT 846
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GAGTCCATAATCATAAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGTGATT 419
Query 847 CTCGTGGATCAACGGTCTGTA-AAGTGGGGT 876
||||||||||||||||||| | |||||||||
Sbjct 420 CTCGTGGATCAACGGTCTG-AGAAGTGGGGT 449
> Ahg497170 jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1
Length=897
Score = 518 bits (280), Expect = 4e-146
Identities = 329/353 (93%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 509 TGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGAAAC 568
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 389 TGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGAAGC 448
Query 569 GTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TTCCAGGGACAGCGAGAGATACG 627
|||| |||||| ||||||| |||||||||||||||| || |||||||||||||||| |||
Sbjct 449 GTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTT-CAGGGACAGCGAGAGAGACG 507
Query 628 CCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTGATC 687
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 508 CCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAAAGACGCTAAACTGATA 567
Query 688 TTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATGCCG 747
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 568 TTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCT 627
Query 748 TTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAGGAA 807
|||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 628 TTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAACGAA 687
Query 808 GACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 860
||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 688 GACATCAACAATAATAAGAAGATTGGAGTGGGAGTGATTCTCGTGGATCAACG 740
> Ahg930646 jgi|Araly1|930646|scaffold_303103.1
Length=237
Score = 217 bits (117), Expect = 2e-55
Identities = 191/223 (86%), Gaps = 20/223 (9%)
Strand=Plus/Plus
Query 7 AGTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTCGAAGTTC 66
||||||||| ||||| | | ||||||||||||||||||||| ||| |||||||||| ||
Sbjct 24 AGTATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAGGCATGTGGTCGAA-TT- 81
Query 67 TATG-G-ACTGGTGGATGCGGCGGTTTTGTTATATGATG-AGATACAACGTCGTGGCAAG 123
|||| | |||||| ||||||| |||| |||||||||| | ||| |||||||||| | |
Sbjct 82 TATGTGTACTGGTTGATGCGG-GGTTATGTTATATGAAGAAGA-ACAACGTCGT---ACG 136
Query 124 ATC-GTATCT---GAAG-A--AGAAAGCCAGAAGAGAATATTTTGTCTCTTCCCGAGAAG 176
| | || ||| |||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 137 A-CTGTCTCTGAAGAAGAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAA- 194
Query 177 AAA-AAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG 218
||| |||||||||||||||||||||||||||||||||||||||
Sbjct 195 AAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG 237
> Ahg930649 jgi|Araly1|930649|scaffold_303106.1
Length=190
Score = 141 bits (76), Expect = 1e-32
Identities = 121/142 (85%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 1 ATGAGTAGTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTCG 60
|||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 21 ATGAATATTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGAACCTGTGGTCG 80
Query 61 AAGTTCTATGGACTGGTGGATGCGGCGGTTTTGTTATATGATGA-GATACAACGTCGTGG 119
|| |||| || |||||| ||||||||||| |||||||||| || || |||||| |||
Sbjct 81 AATTTCTTTGTACTGGTTGATGCGGCGGTAATGTTATATGAAGAAGA-ACAACGCCGT-- 137
Query 120 CAAGATCGTATCTGAAGAAGAA 141
||||| | || |||||||||
Sbjct 138 -AAGATT-TCTCCGAAGAAGAA 157
> Ahg930632 jgi|Araly1|930632|scaffold_303089.1
Length=420
Score = 122 bits (66), Expect = 4e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 401 CGAAAACCCTACAAAACCCTAGTTCTGAACTTTGTTCATCACTCGTACTCTCTGATTACA 460
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 312 CGAAAACACTACAAAACCCTAGTTCTGAACTTTGTTCTTCACTCGTACTCTTTGATTACA 371
Query 461 AGATGGCTGAGTCGGAAAAGA 481
||||||||||||| || ||||
Sbjct 372 AGATGGCTGAGTCTGAGAAGA 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5