BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24860.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480003 jgi|Araly1|480003|fgenesh2_kg.3__2704__AT3G24860.1 1456 0.0
> Ahg480003 jgi|Araly1|480003|fgenesh2_kg.3__2704__AT3G24860.1
Length=1022
Score = 1456 bits (788), Expect = 0.0
Identities = 962/1042 (92%), Gaps = 27/1042 (3%)
Strand=Plus/Plus
Query 1 AACATTGTTACACTAAACCATGGCGACGCCTTCGCCGACCTCCTCTCCTCCCTCTGATTC 60
|||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AACATTATTCCACTAAACCATGACGACGCCTTCGCCGACCTCCTCTCCTCCCTCTGATTC 60
Query 61 AAACCCTAATTCTGCCGCTACTCCGCCGCAT--CAGA-AACAACCACCCTCTCCTCCTCA 117
|||||||||||| | |||||||||||||||| || | |||||||||||||||||||||
Sbjct 61 AAACCCTAATTCCGTCGCTACTCCGCCGCATCACAAACAACAACCACCCTCTCCTCCTCC 120
Query 118 ACCCACGAATCCATCCTCTCCACCACCGCACACCACCGTCGTAGCTTTAGCCGCATCAAC 177
||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 121 ACCCACGGATCCATCCTCTCCACCACCACAAATCACCGTCGTAGCTTTAGCCGCATCAAC 180
Query 178 CTCCGCCGTCGCCAGAAAAACCCAACCTGTTCTCTGGACTCAAGACGAGACCCTCCTCTT 237
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 181 CTCCGCCGTCGCCAGAAAAACCCAACCAGTTCTCTGGACTCACGACGAGACTCTCCTCTT 240
Query 238 AATCGAATCATACAAAGAGAAATGGTTCGCAATTGGTCGTGGTCCTCTAAAATCAACTCA 297
||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 241 AATCGAATCCTACAAAGAGAAATGGTACGCAATTGGTCGCGGTCCTCTAAAATCAACTCA 300
Query 298 CTGGGAAGAGATCGCCGTTGCTGCCTCATCTCGTTCCGGCGTTGAACGGACATCTACACA 357
||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 301 CTGGGAAGACATCGCCGTCGCTGTCTCATCTCGTTCCGGCGTTGAACGGTCATCTACACA 360
Query 358 GTGTAGGCATAAGATCGAGAAGATGCGTAAAAGATTCCGATCTGAGAGACAGAGTATGGG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGTAGGCATAAGATCGAGAAGATGCGTAAAAGATTCCGATCTGAGAGACAGAGTATGGG 420
Query 418 ACCTATCTCAATTTGGCCTTTCTATAATCAAATGGAGGAATTGGATTCTTCAAATCCTGC 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 ACCTATCTCAATTTGGCCTTTCTATAATCAAATGGAGGAATTGGATTC---AAATCCTGC 477
Query 478 TCCGATCTCAGCTCGTCCTCTCACTCGTCTTCCTCCTAATTCGAATAATCGCTACGTaga 537
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 478 TCCGATCTCTGCTCGTCCTCTCACTCGTCTTCCTCCTAATTCGAATAATC---AC-TA-- 531
Query 538 cgacgaagaagaagatgaagaagaggataacaataactacgaagaagaggaagaagaaga 597
| | |||| || ||||| ||||| ||| | ||||||||||||||| || || |||||
Sbjct 532 C-A--AAGACGACGATGACGAAGACGATGA---TAACTACGAAGAAGAAGAGGACGAAGA 585
Query 598 tgagagacagagCAAATCGAGGAGTATTAATTACATATTGAGAAGACCTGGAACTGTTAA 657
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 TGAGAGACAGAGCAAATCGAGAAGTATTAATTACATATTGAGAAGACCTGGAACTGTTAA 645
Query 658 CAGATTTGCTGGAGTTGGTGGAGGATTGTTGTCATGGGGACAAAAAGAGAGATCATCGAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 CAGATTTGCTGGAGTTGGTGGAGGATTGTTGTCATGGGGACAAAAAGAGAGATCATCAAA 705
Query 718 GAGGAAGAGGAACGATGGAGACGGTGGTGAGAGGCGGAGGAAAGGAATGCGA--GCCGTT 775
||||||||||||||| |||||||| || |||||||||||||||||| |||| || |||
Sbjct 706 GAGGAAGAGGAACGACGGAGACGGCGGCGAGAGGCGGAGGAAAGGA--GCGAAAGCGGTT 763
Query 776 GCAGCGGAGATTAGGGCGTTTGCTGAGAGAGTAATGGTAATGGAGAAGAAGAAGATTGAG 835
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GCGGCAGAGATTAGGGCGTTTGCTGAGAGAGTAATGGTAATGGAGAAGAAGAAGATTGAG 823
Query 836 TTTGCTAAAGAGACTGTGAGACTTCGTAAGGAAATGGAGATTCGTAGAATCAATTTGATT 895
|||| ||||||||| ||||| |||||||| || ||||||||||| |||| ||||||||||
Sbjct 824 TTTGTTAAAGAGACAGTGAGGCTTCGTAAAGAGATGGAGATTCGAAGAAGCAATTTGATT 883
Query 896 CAGAGTTCTCAAACTCAGCTTCTTCAATTTATCAACAATGCTTTTGATTCTTTCTAACGT 955
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 884 CAGAGTTCACAAACTCAGCTTCTTGAATTTATCAACAATGCTTTTGATTCTTTCTAACGC 943
Query 956 AGAGATTTAGT--CATTGTTGCTTTTAGATTTGTAACATAGGTAACGGATTTGAAGAAAT 1013
||||||| ||| |||||||| ||||||||||||||||||||||| | ||| |||||| |
Sbjct 944 AGAGATT-AGTGTCATTGTTGGTTTTAGATTTGTAACATAGGTAATGAATT-GAAGAA-T 1000
Query 1014 GCACTATGTAAGCTAATGTTTA 1035
||||| |||||| |||||||||
Sbjct 1001 GCACTGTGTAAGGTAATGTTTA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5