BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G24927.1

Length=903
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929638 jgi|Araly1|929638|scaffold_302095.1                        183    1e-45


> Ahg929638 jgi|Araly1|929638|scaffold_302095.1
Length=380

 Score =  183 bits (99),  Expect = 1e-45
 Identities = 137/155 (88%), Gaps = 4/155 (3%)
 Strand=Plus/Plus

Query  118  TTTTCTTCTGGCATCGGTGGCTCTG-TTATGCACCGTTGGCCGGCAAACTTCCAGCATCG  176
            |||| ||| |||||||||||||||| ||| |||| ||||| ||||||| ||||| || ||
Sbjct  75   TTTTTTTCCGGCATCGGTGGCTCTGTTTA-GCACAGTTGGTCGGCAAAATTCCAACACCG  133

Query  177  ATTGGCTTCTTCCGCAACGGTGGCTGGCTTCGTCTCCATCGATTCGTCTTC-GAGAGATT  235
             |||||||||||||||||||||||||||| |||||||||||||||||| || | | ||||
Sbjct  134  GTTGGCTTCTTCCGCAACGGTGGCTGGCTACGTCTCCATCGATTCGTCCTCTG-GCGATT  192

Query  236  CGGATGGCTTATGTCCCGGCTTTTGTCCGGTTTTG  270
            |||||||||| ||| ||||||||||||||| ||||
Sbjct  193  CGGATGGCTTTTGTACCGGCTTTTGTCCGGATTTG  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33471921126


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5