BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25030.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480010 jgi|Araly1|480010|fgenesh2_kg.3__2711__AT3G25030.1 1555 0.0
Ahg338867 jgi|Araly1|338867|fgenesh1_pg.C_scaffold_2000966 813 0.0
Ahg908020 jgi|Araly1|908020|Al_scaffold_0002_1101 448 6e-125
> Ahg480010 jgi|Araly1|480010|fgenesh2_kg.3__2711__AT3G25030.1
Length=956
Score = 1555 bits (842), Expect = 0.0
Identities = 922/960 (96%), Gaps = 7/960 (1%)
Strand=Plus/Plus
Query 155 ATAAAGTATATTCTATTCATTACAGATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGT 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAAAGTATATTCTATTCATTACAGATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGT 60
Query 215 AAAGACGAAGTTCACATTCTCATTGTTTGTGCTTTGAATCGGTGAAAGATGATTCAAATG 274
||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACTAAGTTCACATTCTAATTATTTGTGCTTTGAATCGGTGAAAGATGATTCAAATG 120
Query 275 GATGGTGGAGATAGGCTGAGAGTGACTTTATTAGATCGTATGTCAACGGTTGAGAGTAGC 334
|| ||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 121 GACGGTGGTGATAGGCTAAGAGTGACTTTATTAGATCGTATGTCAACGGTGGAGACTAGC 180
Query 335 CGGAGCTGTTTAACTCTTGAAGCTATTCTAATGGCTGATAAAAACAGAACCTCGCCGCAG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGAGCTGTTTAACTCTTGAAGCTATTCTAATGGCTGATAAAAACAGAACCTCGCCGCAG 240
Query 395 ATTCTCTCACCACCGCCGTCGAGGAGCCAATCTAACCGGTCACTTGTTGAAGTCATGCAA 454
|||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 241 ATTCTCTCACCACCACCGTCGAGGAACCAATCTAACCGGTCACTTCTTGAAGTAATGCAA 300
Query 455 AGAGAGCACCGACACAGTAGAGATAAAACCGCTTGGAAAAGTCTCCGTGAAAAGCTCCGT 514
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAGAGCACCGACACAGTCGAGACAAAACCGCTTGGAAAAGTCTCCGTGAAAAGCTCCGT 360
Query 515 CTTAAACGTAACGGTTCTGTTTGGATCTCGTCTAATTCTATCCCGAGTTTGGATACGCCT 574
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTAAACGTAACGCTACTGTTTGGATCTCGTCTAATTCTATCCCGAGTTTGGATACGCCT 420
Query 575 ATTCCTAACCGGGATAACGTTAGCCACCAACTTGGTTTCCTCCTTTCTAACTCTGGAAAT 634
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 421 ATTCCTAACCGGGATAACGTTAGCCACCAACTTGGTTTCCTCCTTTCCAACTC---AAAC 477
Query 635 GTAACAGAGGAAGCTTCGTCGGTGGAGGGAAGGATTCGGTTAGGAGCTGTGTTGGCAGAG 694
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 ATAACAGAGGAAGCTTCTTCGGCGGAGGGAAGGATTCGGTTAGGAGCTGTGTTGGCAGAG 537
Query 695 GAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCCGGCGGAGAGGGAAGTGGAGCCGGCG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCCGGCGGAGAGGGAAGTGGAGCCGGCG 597
Query 755 AGGATGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTGTC 814
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 AGGATGTCTTTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTGGTAAGTGTT 657
Query 815 GACGGAGAGGCGGAGGAGGAGGTGGC-G-G-CAGTGACGGCGGCGGAGATAAGTTGTTGT 871
|||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 658 GACGGAGAGGCGGAGGAGGAGGTGGCGGTGACGGTGACGGCGGCGGAGATAAGTTGTTGT 717
Query 872 GTGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGG 777
Query 932 TTGTGTTCTAGAGAGCTTTGGGTTCAAAGAGGAAACTGTCCTCTCTGTAATACCACAATT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 TTGTGTTCTAGAGAGCTTTGGGTTCAAAGAGGAAACTGTCCTCTCTGTAATACTACAATT 837
Query 992 TTAGAAGTTCTTGATCTTTTTTAGACTTTTCAGTTTAATTATCTTAATTTATCATAATCA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTAGAAGTTCTTGATCTTTTTTAGACTTTTCAGTTTAATTATCTTAATTTATCATAATCA 897
Query 1052 GGTTGTTTCCTTTGTTGTTGTAATGTGTCGTTGAATATTTGATGAGTAATCCTTTTGTAG 1111
|||||||||||||||||||||||||| | |||| ||||| |||||| |||||||||||||
Sbjct 898 GGTTGTTTCCTTTGTTGTTGTAATGTCTGGTTGCATATT-GATGAGAAATCCTTTTGTAG 956
> Ahg338867 jgi|Araly1|338867|fgenesh1_pg.C_scaffold_2000966
Length=864
Score = 813 bits (440), Expect = 0.0
Identities = 723/850 (85%), Gaps = 57/850 (7%)
Strand=Plus/Plus
Query 180 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTAAAGACGAAGTTCACATTCTCATTG 239
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 38 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTGAAGACGAAGTTCACA---T--TGG 92
Query 240 TTTGTGCTTTGAATCGGT-G-AAAGATGATTCAAATGGATGGTGGAGATAGGCTGAGAGT 297
|||||||| |||||| || | |||||||||||||||||| |||||||||||| | |||||
Sbjct 93 TTTGTGCTCTGAATCTGTAGTAAAGATGATTCAAATGGACGGTGGAGATAGGGTAAGAGT 152
Query 298 GACTTTATTAGATCGTATGTCAACGGTTGAGAGTAGCCGGAG--C--T-----GTTTAAC 348
||| ||||||||||||||||| |||||||||| || |||||| | | | |||||
Sbjct 153 GACGTTATTAGATCGTATGTCGACGGTTGAGACTAACCGGAGCTCATTGACGGGATTAAC 212
Query 349 TCTTGAAGCTATTCTAATGGCTGATAAAAACAGAACCTCGCCGCAGATTCTCTCACCACC 408
||| |||||||||||| | ||||| ||||||| ||||||||||| | ||||
Sbjct 213 TCTAGAAGCTATTCTACTAGCTGACAAAAACACAACCTCGCCGC--A-------ACCA-- 261
Query 409 GCCGTCGAGGAGCCAATCTAACCGGTCACTTGTTGAAGTCATGC-AA-AG---A--G--A 459
||||| | | |||||| |||||| ||||| | || || |||| || || | | |
Sbjct 262 -CCGTCAAACAACCAATCGAACCGGACACTTCTCGATGTAATGCAAAGAGACCACCGACA 320
Query 460 -G-C-ACCGACACAGTAGAGATAAAACCGCTTGGAAAAGTCTCCGTGAAAAGCTCCGTCT 516
| | ||||||||| | |||| |||||| ||||| ||| ||||||||||||||| |||||
Sbjct 321 CGACGACCGACACAATCGAGACAAAACCACTTGGGAAACTCTCCGTGAAAAGCTACGTCT 380
Query 517 TAAACGTAACGGTTCTGTTTGGATCTCGTCTAATTCTATCCCGAGTTTGGATACGCCTAT 576
|||||||||| | |||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 381 CAAACGTAACGCTACTGTTTGGATCTCGTCTAATCCTATCCCGACTTTGGATAATCCTAT 440
Query 577 TCCTAACCGGGATAACGTTAGCCACCAACTTGGTTTCCTCCTT-TCTAACTCTGGAAATG 635
||||| |||||||||||||||||||||||| |||||||| ||| |||| | | |||||||
Sbjct 441 TCCTACCCGGGATAACGTTAGCCACCAACTCGGTTTCCT-CTTGTCTACCACCGGAAATG 499
Query 636 TAACAGAGGAAGCT-TCGTCGGTGGAGGGAAGGA-TTCGGTTAGGAGCTGTGTTGGCAGA 693
|||| ||||||| | |||||||| ||||||| || ||| | |||||||||| ||||||||
Sbjct 500 TAACGGAGGAAG-TCTCGTCGGTAGAGGGAA-GAGTTCAGCTAGGAGCTGTATTGGCAGA 557
Query 694 GGAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCCGGC-GGAGAGGGAAGTGGAGCCGG 752
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 558 GGAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCAG-CTGGAGAGGGAAGTGGAGCCGG 616
Query 753 CGAGGATGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTG 812
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 617 CGAGGATGTCTTTAATGGAGTTGTTGGAAGAGAATGAAGGGCAAATTAGTTTGGTAAGTG 676
Query 813 TCGACGGAGAGGCGGAGGAGGAGGTGGCGGCAGTGAC-G-G-CGG---CGGAGATAAGTT 866
| ||||||||||||||||||| || |||||| | ||| | | ||| ||||||||||||
Sbjct 677 TTGACGGAGAGGCGGAGGAGGTGGCGGCGGCGGAGACTGTGGCGGTGGCGGAGATAAGTT 736
Query 867 GTTGTGTGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTT 926
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 737 GTTGTGTGTGTATGAA-AGAAGCAAAGGAGCGGCGTTTATTCCATGTGGTCATACGTTTT 795
Query 927 GTAGGTTGTGTTCTAGAGAGCTTTGG-GTTCAAAGAGGAAACTGTCCTCTCTGTAATACC 985
||||||||||||| |||||| ||| | |||||||||||| |||||||||| ||||||||
Sbjct 796 GTAGGTTGTGTTCAAGAGAG-TTTCGAGTTCAAAGAGGAGACTGTCCTCTTTGTAATACA 854
Query 986 ACAATTTTAG 995
||||||||||
Sbjct 855 ACAATTTTAG 864
> Ahg908020 jgi|Araly1|908020|Al_scaffold_0002_1101
Length=402
Score = 448 bits (242), Expect = 6e-125
Identities = 326/364 (90%), Gaps = 15/364 (4%)
Strand=Plus/Plus
Query 642 AGGAAGCT-TCGTCGGTGGAGGGAAGGA-TTCGGTTAGGAGCTGTGTTGGCAGAGGAGAG 699
|||||| | |||||||| ||||||| || ||| | |||||||||| ||||||||||||||
Sbjct 44 AGGAAG-TCTCGTCGGTAGAGGGAA-GAGTTCAGCTAGGAGCTGTATTGGCAGAGGAGAG 101
Query 700 AGCATTATCGGCTAGAGAAGAGGAAACGCCGGC-GGAGAGGGAAGTGGAGCCGGCGAGGA 758
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 102 AGCATTATCGGCTAGAGAAGAGGAAACGCAG-CTGGAGAGGGAAGTGGAGCCGGCGAGGA 160
Query 759 TGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTGTCGACG 818
|||| || |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 161 TGTCTTTAATGGAGTTGTTGGAAGAGAATGAAGGGCAAATTAGTTTGGTAAGTGTTGACG 220
Query 819 GAGAGGCGGAGGAGGAGGTGGCGGCAGTGAC-G-G-CGG---CGGAGATAAGTTGTTGTG 872
||||||||||||||| || |||||| | ||| | | ||| ||||||||||||||||||
Sbjct 221 GAGAGGCGGAGGAGGTGGCGGCGGCGGAGACTGTGGCGGTGGCGGAGATAAGTTGTTGTG 280
Query 873 TGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGGT 932
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 281 TGTGTATGAA-AGAAGCAAAGGAGCGGCGTTTATTCCATGTGGTCATACGTTTTGTAGGT 339
Query 933 TGTGTTCTAGAGAGCTTTGG-GTTCAAAGAGGAAACTGTCCTCTCTGTAATACCACAATT 991
||||||| |||||| ||| | |||||||||||| |||||||||| |||||||| ||||||
Sbjct 340 TGTGTTCAAGAGAG-TTTCGAGTTCAAAGAGGAGACTGTCCTCTTTGTAATACAACAATT 398
Query 992 TTAG 995
||||
Sbjct 399 TTAG 402
Score = 78.7 bits (42), Expect = 9e-14
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 180 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTAAAGACGAAG 224
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTGAAGACGAAG 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5