BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25040.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480012 jgi|Araly1|480012|fgenesh2_kg.3__2713__AT3G25040.1 1537 0.0
Ahg916105 jgi|Araly1|916105|Al_scaffold_0008_856 1018 0.0
Ahg333020 jgi|Araly1|333020|fgenesh1_pm.C_scaffold_9000048 747 0.0
> Ahg480012 jgi|Araly1|480012|fgenesh2_kg.3__2713__AT3G25040.1
Length=1032
Score = 1537 bits (832), Expect = 0.0
Identities = 933/981 (95%), Gaps = 10/981 (1%)
Strand=Plus/Plus
Query 94 AAGCAAGGAGCTTCATAATAAAACCCT--AGAGATATTTGTTTCTCCAATTTCAAAAGAC 151
|||||||||||||| |||||||||| |||||| |||||||||||||||||| |||||
Sbjct 58 AAGCAAGGAGCTTC---ATAAAACCCTAGAGAGATCTTTGTTTCTCCAATTTCAGAAGAC 114
Query 152 GAGACGTGAAGAAGACGATCGAAGATGAACATTTTCAGATTAGCTGGTGATATGACTCAC 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GAGACGTGAAGAAGACGATCGAAGATGAACATTTTCAGATTAGCTGGTGATATGACTCAC 174
Query 212 CTAGCCAGTGTTCTTGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTT 271
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTAGCCAGTGTTCTGGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTT 234
Query 272 TCATTGAAGACTCAAGAACTCTATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTC 331
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 TCATTGAAGACTCAAGAACTCTATGCCATTGTCTTTGCGACGCGATATTTGGATATTTTC 294
Query 332 ACGAGTTTTGTGTCTCTGTACAACACCTCTATGAAGTTGGTGTTTTTAGGAAGTTCTTTT 391
|||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 295 ACGAGTTTCGTGTCTCTCTATAACACCTCTATGAAGTTGGTGTTCTTAGGAAGTTCCTTT 354
Query 392 TCGATTGTGTGGTACATGAAGTATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAA 451
|||||||| ||||| |||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 355 TCGATTGTTTGGTATATGAGGTATCATAAGGCTGTCCACAGGACTTACGACAGGGAGCAA 414
Query 452 GATACGTTTCGTCATTGGTTCCTTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACAT 511
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 415 GATACGTTTCGTCATTGGTTCCTTGTGCTTCCTTGCTTACTCTTAGCTCTTCTGATTCAT 474
Query 512 GAAAAGTTTACCTTTCTTGAGGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCC 571
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 475 GAAAAGTTTACCTTTCTCGAGGTTTTGTGGACGTTTTCATTGTACTTGGAGGCTGTTGCC 534
Query 572 ATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAA 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 535 ATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGGCAA 594
Query 632 TATATATTTCTCCTTGGGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTAC 691
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TACATATTTCTCCTTGGGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTAC 654
Query 692 TTCACTGAGCCGCACTTTGTTCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTCACTGAGCCGCACTTTGTTCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTG 714
Query 752 CTCTATGCCGACTTCTTCTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAA 811
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTCTATGCCGACTTCTTTTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAG 774
Query 812 TTACCAGCTTAATTTCTAAAGTTTCAATGCTCGGGAACCCTACGGATTCGATTTGGTGCC 871
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 775 TTACCAGCTTAATTTCTAAATTTTCAATGCTCGGAAACCCTACGGATTCAATTTGGTGCC 834
Query 872 CGACAAAACATCTACC-GGAATGTTACCAATTT-ACTCTGTTGGTGGTTATTAGAGGAGA 929
||||| || ||| ||| ||| |||||||||||| |||||| ||||||||| |||||||||
Sbjct 835 CGACACAATATCCACCCGGA-TGTTACCAATTTTACTCTGATGGTGGTTAGTAGAGGAGA 893
Query 930 ACGAGCATAGATGTGTAAACTCCAGCAATCTAACTTATTACACTTTCTTTAGACTTTCTC 989
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 894 ACGAGCATAGATGTGTAAACTCCAGCAATCTAACTTATTATACTTTCTTTAGACTTTCTC 953
Query 990 GTCTCTCATCttttttttGGTCGACTTAGTGTTACTAAATATTTCGACGCGACAGTAATA 1049
||||||| ||||||||| ||| || ||||||||||||||||||||||| ||||||||||
Sbjct 954 GTCTCTCTTCTTTTTTT-GGT-GAGTTAGTGTTACTAAATATTTCGACATGACAGTAATA 1011
Query 1050 TATTCACCACAATTCACAACG 1070
|||||| ||||||||||||||
Sbjct 1012 TATTCATCACAATTCACAACG 1032
Score = 84.2 bits (45), Expect = 2e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 11 GaaaataaaaaacagaaaaaaTTCGTGGAAACGCCATTAACGAGATCTAGCACAAAC 67
||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 GAAAAAAAAAAACAGAGAAAATTGGTGGAAACGCCATTAACGAGATCTAGCACGAAC 57
> Ahg916105 jgi|Araly1|916105|Al_scaffold_0008_856
Length=678
Score = 1018 bits (551), Expect = 0.0
Identities = 639/681 (94%), Gaps = 7/681 (1%)
Strand=Plus/Plus
Query 176 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAG-CCAGTGTTCTT-GTCTTGC 233
|||||||||||||||||||||||||||||||||||| | | ||||||| || |||||||
Sbjct 1 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACAT-GTTCAGTGTT-TTGGTCTTGC 58
Query 234 TTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTTTCATTGAAGACTCAAGAACTCT 293
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 59 TTCTCAAGATCCACACCATCAAATCCTGCGCTGGAGTTTCAGTGAAGACTCAAGAACTCT 118
Query 294 ATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTCACGAGTTTTGTGTCTCTGTACA 353
||||||||||||||||||| || |||||||||||||||||||||||||||||| | || |
Sbjct 119 ATGCCATTGTCTTTGCGACTCGATATTTGGATATTTTCACGAGTTTTGTGTCTATCTATA 178
Query 354 ACACCTCTATGAAGTTGGTGTTTTTAGGAAGTTCTTTTTCGATTGTGTGGTACATGAAGT 413
|||||| ||||||||||||||| ||||||||||| |||||||| || |||||||||| ||
Sbjct 179 ACACCTTTATGAAGTTGGTGTTCTTAGGAAGTTCCTTTTCGATCGTTTGGTACATGAGGT 238
Query 414 ATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTCC 473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 ATCATAAGGCCGTCCACAGGACTTACGACAGGGAGCAAGATACGTTTCGTCATTGGTTCC 298
Query 474 TTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGG 533
|||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 299 TTGTGCTTTCGTGCTTACTCTTAGCTCTTCTGATACATGAAAAGTTTACCTTTCTTGAGG 358
Query 534 TATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGT 593
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TACTGTGGACGTTTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGC 418
Query 594 TGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGGGGGT 653
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 419 TGCAAAGGACTAGAAACATTGACAACTTGACCGGGCAATATATATTTCTTCTTGGGGGCT 478
Query 654 ACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTC 713
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 ACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCACACTTTGTTC 538
Query 714 ACTGGATAACATGGATCGCCGGGT-TTGTTCAAACACTGCTCTATGCCGACTTCTTCTAT 772
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 539 ACTGGATAACATGGATCACC-GGTCTTGTTCAAACACTGCTCTATGCCGACTTCTTCTAT 597
Query 773 TATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAATTACCAGCTTAATTTCTAAAG 832
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||
Sbjct 598 TATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTC-AATTGCCAGCTTAACTTCAAAAT 656
Query 833 TTTCAATGCTCGGGAACCCTA 853
|||| |||||||| |||||||
Sbjct 657 TTTCGATGCTCGGAAACCCTA 677
> Ahg333020 jgi|Araly1|333020|fgenesh1_pm.C_scaffold_9000048
Length=648
Score = 747 bits (404), Expect = 0.0
Identities = 568/648 (88%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 176 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAGCCAGTGTTCTTGTCTTGCTT 235
||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGAATATTTTCAGATTAGCCGGTGATATGACTCACCTCGCTAGTGTTCTTGTCTTGCTT 60
Query 236 CTCAAGATCCACACCATCAAATCCTGCGCTGGTGTTTCATTGAAGACTCAAGAACTCTAT 295
||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||
Sbjct 61 CTCAAGATCCACACCATCAAATCCTGCGCCGGTGTATCGTTAAAGACTCAAGAACTCTAT 120
Query 296 GCCATTGTCTTTGCGACGCGTTATTTGGATATT-TTCACGAGTTTTGTGT-CTCTGTACA 353
||||||||||| || ||||| ||||| ||||| || ||||||||| | | || | || |
Sbjct 121 GCCATTGTCTTCGCTACGCGATATTTAGATATACTT-ACGAGTTTT-TATTCTATCTATA 178
Query 354 ACACCTCTA-TGAAGTTGGTGTTTTTAGGAAGTTCTTTTTCGATTGTGTGGTACATGAAG 412
|||| |||| |||||||| | || ||||||||||||||||| || || ||||||||||||
Sbjct 179 ACAC-TCTAATGAAGTTGATATTCTTAGGAAGTTCTTTTTCAATAGTTTGGTACATGAAG 237
Query 413 TATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTC 472
||||||||| | || || |||||||| || ||||| |||||||||||||||||||||||
Sbjct 238 TATCATAAGACTGTTCATAGGACTTATGATAGAGAACAAGATACGTTTCGTCATTGGTTT 297
Query 473 CTTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAG 532
||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 298 CTTGTGCTTCCTTGCATTCTCTTAGCTCTTTTGATTCACGAAAAGTTTACCTTTCTCGAG 357
Query 533 GTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATA-TTACCTCAGCTTGTCTT 591
|| ||||||| | ||||||||| ||||| |||||||| ||| || ||||||||||| ||
Sbjct 358 GTCCTGTGGACTTTTTCATTGTATTTGGAAGCTGTTGCTATACTT-CCTCAGCTTGTTTT 416
Query 592 GTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGGGG 651
| |||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct 417 GCTGCAGAGGACTAGAAATATCGACAACTTGACTGGACAATACATATTTCTCCTCGGGGG 476
Query 652 GTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGT 711
||||| ||||| ||||| ||||||||||| || |||||||||||||| || ||||||||
Sbjct 477 ATACCGAGGATTCTACATACTCAACTGGATTTATCGTTACTTCACTGAACCACACTTTGT 536
Query 712 TCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTA 771
||||||||||||||||||||| ||| | ||||||||| ||||||| ||||| ||||||||
Sbjct 537 TCACTGGATAACATGGATCGCTGGGCTCGTTCAAACATTGCTCTACGCCGATTTCTTCTA 596
Query 772 TTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAATTACCAGC 819
||||| |||| ||| ||||| ||||| |||||||| || |||||||
Sbjct 597 CTATTACTTCCAAAGTTGGAAAAACAATAAAAAGCTGCAGCTACCAGC 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5