BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25050.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930617 jgi|Araly1|930617|scaffold_303074.1 1528 0.0
Ahg916106 jgi|Araly1|916106|Al_scaffold_0008_857 941 0.0
> Ahg930617 jgi|Araly1|930617|scaffold_303074.1
Length=915
Score = 1528 bits (827), Expect = 0.0
Identities = 888/917 (97%), Gaps = 5/917 (1%)
Strand=Plus/Plus
Query 1 ACAACAAAAATTAAATCAAAGATGGACTATATGAGAATCTTTAGTGTTTTTGTAGTAACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAACAAAAATTAAATCAAAGATGGACTATATGAGAATCTTTAGTGTTTTTGTAGTAACG 60
Query 61 TTATGGATCATAAGGGTTGATGCTAGGGTTTTCGGAGGACGAGGAATCGAAAAATTTGTA 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTATGGATCATAAGGGTTGATGCTAGGGTTTTGGGAGGACGAGGAATCGAAAAATTTGTT 120
Query 121 ACTTTCGGTCAGAATTATATTGTTACGTGGGGACAAAGTCATGTTTCTACACTCCATTCT 180
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 121 ACTTTCGGTCAGAATTATGTTGTTAAGTGGGGACAAAGTCATGTTTCTACACTCCACTCT 180
Query 181 GGCGAAGAAGTTGATCTTTACATGGATCAATCTTCAGGTGGTGGGTTCGAATCCAAGGAC 240
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 GGCGAAGAAGTTGATCTCTACATCGATCAATCTTCAGGTGGTGGCTTCGAATCCAAGGAC 240
Query 241 -GCCTACGGATCAGGTCTCTTTGAAATGAGAATCAAAGTGCCTTCAGGAAATACTGGCGG 299
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AG-CTACGGATCAGGTCTCTTTGAAATGAGAATCAAAGTGCCTGGAGGAAATACTGGCGG 299
Query 300 CATCGTCACCGCTTTTTACTTGACGTCGAAAGGAGGTGGTCACGACGAGATTGACTTCGA 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATCGTCACCGCGTTTTACTTGACGTCGAAAGGAGGTGGTCACGACGAGATTGACTTCGA 359
Query 360 GTTTCTAGGGAACAACAACGGAAAACCGGTAACGTTACAGACAAATCTGTTTCTAAATGG 419
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GTTTCTAGGGAACAACAATGGAAAACCGGTAACGTTACAGACAAATCTGTTTCTGAATGG 419
Query 420 AGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGGTTCAATCCAACCAAACACTACCACAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGGTTCAATCCAACCAAACACTACCACAC 479
Query 480 TTATGGGCTTCTTTGGAACCCTTACCAAATTGTGTTTTACGTGGACAACATCCCAATAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTATGGGCTTCTTTGGAACCCTTACCAAATTGTGTTTTACGTGGACAACATCCCAATAAG 539
Query 540 AGTATACAAAAACGAAAACGGCGTAAGTTATCCATCAAAGCCTATGCAAGTCGAGGCTAG 599
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 540 AGTATACAAAAACGAAAACGGTGTAAGCTATCCATCAAGGCCTATGCAAGTCGAGGCTAG 599
Query 600 TCTCTGGAACGGTGACGATTGGGCGACTGATGGTGGTCGGACTAAGGTTAACTGGTCATA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTCTGGAACGGTGACGATTGGGCGACTGATGGTGGTCGGACTAAGGTTAACTGGTCATA 659
Query 660 CTCTCCTTTCATTGCACATTTCCGAGACTTCGCCTTATCCGGCTGCAACATAGATGGTCG 719
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CTCTCCTTTCATTGCCCATTTCCGAGACTTCGCCTTATCCGGTTGCAACATAGATGGTCG 719
Query 720 GAGTAATAATGTCGGCGCTTGTGAATCCTCCAACTACTGGTGGAATGCAGGCAACTATCA 779
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GAGTAATAATGTGGGCGCTTGTGAATCCTCCAACTACTGGTGGAATGCAGGCAAGTATCA 779
Query 780 AAGATTAAGCGGAAACGAACAGAAACTTTATGAACATGTGAGGAGCAAGTACATGAACTA 839
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 AAGATTAAGCGGAAACGAACAGAAACTTTATGAGCATGTGAGGAGCAAGTACATGAACTA 839
Query 840 TGACTATTGTACTGATCGCTCTAAGTACCAAACTCCTCCTAGAGAATGTTATTGAAGTAA 899
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 TGACTATTGTACTGACCGGTCTAAGTACCAAACTCCTCCTAGAGAATGTTATTGAAATAA 899
Query 900 CATATATACGTTAATTA 916
|||| | |||||||||
Sbjct 900 CATA-A--CGTTAATTA 913
> Ahg916106 jgi|Araly1|916106|Al_scaffold_0008_857
Length=693
Score = 941 bits (509), Expect = 0.0
Identities = 628/685 (92%), Gaps = 10/685 (1%)
Strand=Plus/Plus
Query 215 CAGGTGGTGGGTTCGAATCCAAGGAC-GCCTACGGATCAGGTCTCTTTGAAATGAGAATC 273
|||||||||||||||| |||||| || | |||||||||||||||||| |||||||||||
Sbjct 14 CAGGTGGTGGGTTCGAGTCCAAGAACAG-CTACGGATCAGGTCTCTTCCAAATGAGAATC 72
Query 274 AAAGTGCCTTCAGGAAATACTGGCGGCATCGTCACCGCTTTTTACTTGACGTCGAAAGGA 333
|||||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 73 AAAGTGCCCGGAGGAAATTCTGGCGGCGTCGTCACAGCTTTTTACTTGACGACGAAAGGA 132
Query 334 GGTGGTCACGACGAGATTGACTTCGAGTTTCTAGGGAACAACAACGGAAAACCGGTAACG 393
|||||||| |||||| ||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 133 GGTGGTCATGACGAGGTTGACTTTGAGTTTCTAGGGAACAACAACGGAAGACCAATAACA 192
Query 394 TTACAGACAAATCTGTTTCTAAATGGAGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGG 453
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 193 TTACAGACAAATCTGTTTCTGAATGGAGAAGGAAACAGAGAACAGAGGTTTTTGCTTTGG 252
Query 454 TTCAATCCAACCAAACACTACCACACTTATGGGCTTCTTTGGAACCCTTACCAAATTGTG 513
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 253 TTCAACCCAACCAAACACTACCACACTTATGGGATTCTTTGGAACCCTTACCAAATTGTG 312
Query 514 TTTTACGTGGACAACATCCCAATAAGAGTATACAAAAACGAAAACGGCGTAAGTTATCCA 573
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 313 TTTTACGTGGACAACATCCCAATAAGAGTGTACAAAAACGAGAACGGCGTAAGTTATCCA 372
Query 574 TCAAAGCCTATGCAAGTCGAGGCTAGTCTCTGGAACGGTGACGATTGGGCGACTGATGGT 633
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 373 TCAAAGCCTATGCAAGTCGAGGCCAGTCTCTGGAACGGTGACGATTGGGCGACTGATGGT 432
Query 634 GGTCGGACTAAGGTTAACTGGTCATACTCTCCTTTCATTGCACATTTCCGAGACTTCGC- 692
|||||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 433 GGTCGGACCAAGATTAACTGGTCATACTCTCCTTTCATTGCTCATTTCCAAGACTTCGCT 492
Query 693 CTTATCCGGCTGCAACATAGATGGTCGGAGTAATAATGTCGGCGCTTGTGAATCCTCCAA 752
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 493 CT-ATCCGGCTGCAACATAGATGGTCGGAGTAATAATGTTGCCGCTTGTGAATCCTCCAA 551
Query 753 CTACTGGTGGAATGCAGGCAACTA-TCAAAGAT-TAAGCGGA-AACGAACAGAAACTTTA 809
||||||||||||||||| | | | ||| | ||||| | ||||||||||||||||
Sbjct 552 CTACTGGTGGAATGCAG-CTTCCAATCAC-GCCCTAAGCC-ACAACGAACAGAAACTTTC 608
Query 810 TGAACATGTGAGGAGCAAGTACATGAACTATGACTATTGTACTGATCGCTCTAAGTACCA 869
||| ||||||||| || |||||||||||||| ||||||| |||||||||||| |||||
Sbjct 609 TGAGTATGTGAGGAAAAAATACATGAACTATGATTATTGTATTGATCGCTCTAAATACCA 668
Query 870 AACTCCTCCTAGAGAATGTTATTGA 894
|||||||||||||||||||||||||
Sbjct 669 AACTCCTCCTAGAGAATGTTATTGA 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5