BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25060.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916107 jgi|Araly1|916107|Al_scaffold_0008_858 1520 0.0
Ahg930618 jgi|Araly1|930618|scaffold_303075.1 606 1e-172
> Ahg916107 jgi|Araly1|916107|Al_scaffold_0008_858
Length=1773
Score = 1520 bits (823), Expect = 0.0
Identities = 1050/1159 (91%), Gaps = 18/1159 (2%)
Strand=Plus/Plus
Query 25 ATGTTACATCGGACTCTCCTGTGTCCGAAACG-CATCAAATTTCTGCAATCCATTTCTA- 82
|||||||||||||||||| ||||||||| ||| | |||||||| ||| || | | |||
Sbjct 1 ATGTTACATCGGACTCTCTTGTGTCCGAGACGTC-TCAAATTTTTGCTAT-C--TGCTAG 56
Query 83 -AACT-CAAGCGGCACATCACTCAGATCCACGCTTTTGTAATCAGTACTGGTAATTTACT 140
|| | |||||||||||| ||||| | |||||||| ||||| | | | |||||||||||
Sbjct 57 TAATTACAAGCGGCACATTGCTCAGGTTCACGCTTTCGTAATTACTTCCGGTAATTTACT 116
Query 141 TAATGGAAGCTCTATTAGTCGAGATCTCATCGCTTCATGTGGACGAATCGGTGAGATCTC 200
||||||||||| |||||||| |||||| | |||| || |||||||||||| ||||||||
Sbjct 117 AAATGGAAGCTCCATTAGTCGCGATCTCGTTGCTTTATATGGACGAATCGGGGAGATCTC 176
Query 201 TTATGCACGTAAGGTGTTCGACGAATTGCCGCAGAGGGGTGTTTCTGTTTATAATTCCAT 260
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||
Sbjct 177 TTATGCACGTAAGGTGTTCGACCAATTGCCTCAGAGAAGTGTTTCTGTTTATAACTCCAT 236
Query 261 GATTGTGGTTTATTCTCGTGGAAAAAATCCAG-ATGAGGTTTTGCGACTTTATGATCAGA 319
|||||||||||||||||||||||| || || | ||||||||||| ||||||||||||||
Sbjct 237 GATTGTGGTTTATTCTCGTGGAAACAA-CCCGAATGAGGTTTTGAAACTTTATGATCAGA 295
Query 320 TGATAGCTGAAAAAATTCAACCAGATAGCTCAACGTTCACTATGACGATCAAAGCGTGCT 379
||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 296 TGATATCTGAAAGGGTTAAACCAGATAGCTCAACGTTCACTATAACGATCAAAGCGTGTT 355
Query 380 TAAGTGGTTTGGTTTTAGAGAAAGGAGAGGCTGTGTGGTGTAAAGCAGTGGACTTTGGGT 439
| |||||| ||| ||||||||||||||| ||||| ||| |||||||||| || |||||||
Sbjct 356 TGAGTGGTATGGCTTTAGAGAAAGGAGAAGCTGTATGGAGTAAAGCAGTTGAATTTGGGT 415
Query 440 ATAAAAATGATGTCTTTGTTTGTTCATCTGTCTTGAATCTGTATATGAAGTGTGGGAAAA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATAAAAATGATGTCTTTGTTTGTTCATCTGTCTTGAATCTGTATATGAAGTGTGGGAAAA 475
Query 500 TGGATGAAGCAGAGGTTTTGTTTGGAAAGATGGCGAAAAGAGATGTTATTTGCTGGACAA 559
|| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 476 TGAATGAAGCTGAGGTTTTGTTTAGAAAGATGACGAAAAGAGATGTTATTTGCTGGACAA 535
Query 560 CAATGGTGACAGGGTTTGCACA-GGCTGGTAAGTCGTTGAAGGCTGTTGAGTTTTACAGA 618
||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 536 CAATGGTGACAGGATTTGCACAAGG-TGGTAAGTCAATGAAGGCTGTTGAGTTTTACAGA 594
Query 619 GAAATGCAGAATGAAGGGTTTGGTAGGGATAGGGTTGTGATGTTGGGTCTCTTACAAGCT 678
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 595 GAAATGCAGAATGAAGGATTTGGTAGGGATAGGGTTGTGATGTTGGGTCTTTTACAAGCT 654
Query 679 TCTGGTGATCTCGGGGATACGAAAATGGGCCGTTCGGTTCACGGGTATTTGTAT-AGAAC 737
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 655 TCTGGTGATCTCGGGGATGCGAAAATGGGCCGTTCGGTTCACGGGTATTTG-ATTAGAAC 713
Query 738 AGGTCTTCCTATGAATG-TAGTGGTTGAAACCAGCCTGGTTGATATGTATGCAAAAGTTG 796
|||||||||||| ||| | || ||||||||||||||||||||||||||||| || ||||
Sbjct 714 AGGTCTTCCTATAAATACT-GTAGTTGAAACCAGCCTGGTTGATATGTATGCTAAGGTTG 772
Query 797 GGTTTATAGAGGTTGCTTCTAGGGTGTTTAGTAGGATGATGTTTAAAACCGCAGTTTCGT 856
||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 773 GGTTTATAGAGGTTGCTTCCAGGGTGTTTAGTAGGATGATGTTTAAAACAGCGGTCACGT 832
Query 857 GGGGGTCGTTGATCTCTGGATTTGCTCAAAATGGATTAGCTAATAAAGCATTTGAAGCT- 915
||||||||||||||||||||| |||||||||||||||||||||| | || ||||||| |
Sbjct 833 GGGGGTCGTTGATCTCTGGATATGCTCAAAATGGATTAGCTAATTATGCTTTTGAAG-TA 891
Query 916 GTTGTGGAAATGCAGAGCCTTGGGTTTCAACCGGATTTAGTGACGCTTGTTGGAGTACTT 975
|| || || |||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 892 GTAGTAGAGATGCAGAGCCTTGGGTTTCAACTGGATTTAGCGACTCTTGTTGGAGTACTT 951
Query 976 GTGGCGTGTTCGCAAGTCGGGTCATTAAAGACTGGTAGATTAGTACATTGTTATATTTTG 1035
||||||||||||||||| |||||||||| |||||||| || ||||||||||| ||||||
Sbjct 952 GTGGCGTGTTCGCAAGTTGGGTCATTAACGACTGGTATATCGGTACATTGTTACATTTTG 1011
Query 1036 AAAAGGCACGTTCTTGATCGAGTAACCGCAACTGCTTTGATGGACATGTACTCAAAATGT 1095
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 1012 AAAAGGCACGTTCTTGATCGAGTAACCGCGACTGCACTGATGGACATGTATTCAAAATGC 1071
Query 1096 GGCGCTCTTTCAAGTTCAAGAGAAATCTTTGAACATGTAGGAAGGAAAGACTTGGTTTGT 1155
||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1072 GGCGCTCTTTCAAGTTCGAGAGTAATCTTTGACCATGTAGGAAGGAAAGACTTGGTTTGT 1131
Query 1156 TGGAACACAATGATATCTT 1174
|||||||||||||||||||
Sbjct 1132 TGGAACACAATGATATCTT 1150
Score = 704 bits (381), Expect = 0.0
Identities = 521/589 (88%), Gaps = 8/589 (1%)
Strand=Plus/Plus
Query 1205 TTGTATCGTTGTTTCTCAAAATGACGGAATCAAACATAGAACCCGACCACGCCACGTTTG 1264
||||||| |||| ||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1151 TTGTATCAATGTTCCTCAAAATGACGGAAACTAACATAGAACCAGACCACGCCACGTTTG 1210
Query 1265 CATCACTTCTCTCTGCTCTTAGCCACTCGGGTCTCGTAGAACAAGGCCAACATTGGTTCA 1324
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 CATCCCTTCTCTCTGCTCTTAGCCACTCGGGTCTCGTAGAACAAGGCCAACATTGGTTCA 1270
Query 1325 GCGTCATGATAAACAAATATAAGATCCAACCGAGTGAAAAGCATTACGTTTGTTTGATTG 1384
|||||||||||||||||||||| || |||||||| ||||| || |||||||||||||| |
Sbjct 1271 GCGTCATGATAAACAAATATAATATTCAACCGAGCGAAAAACACTACGTTTGTTTGATCG 1330
Query 1385 ATCTTCTTGCACGTGCAGGGAGAGTCGAAGAAGCTCTTGATATGATAAACTCTGAGAAAC 1444
|||| || ||||||||||||||||| |||||||||||||| ||||||||||| | ||||
Sbjct 1331 ATCTCCTCGCACGTGCAGGGAGAGTTGAAGAAGCTCTTGACATGATAAACTCGGCCAAAC 1390
Query 1445 TTGACAATGCTTTACCAATATGGGTTGCTCTTCTTTCAGGATGCATTAATCACAGGAATC 1504
|||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1391 TTGACAATGCTTTACCCATCTGGGTTGCTCTTCTCTCAGGATGCATCAATCACAGGAATT 1450
Query 1505 TATCAGTCGGGGACATTGCGGCTAATAAGATTCTCCAGTTGAATCCGGATAGTATTGGGA 1564
|||||||||||||||| ||||||||||||||||||||| ||||||| ||||| | ||||
Sbjct 1451 TATCAGTCGGGGACATCGCGGCTAATAAGATTCTCCAGCTGAATCCAGATAGCACCGGGA 1510
Query 1565 TCCAAACACTGGTTTCTAACTTCTTTGCAACTGCCA-ATAAGTGGAAAGAAGTGGCCAAA 1623
||||||| ||||||| |||||| ||||||||||| | | ||||||| ||||||||||||
Sbjct 1511 TCCAAACGCTGGTTTGTAACTTTTTTGCAACTGCGAGA-AAGTGGACGGAAGTGGCCAAA 1569
Query 1624 GTGAGGAAGTTGATGAGAAATGGGGCCATGGAGAAGGTACCAGGCTACAGCGCGATCGA- 1682
|||||||| || ||||||||||||||||||||||| ||||||||| | || | ||| ||
Sbjct 1570 GTGAGGAAATTAATGAGAAATGGGGCCATGGAGAAAGTACCAGGCCAGAGTGTGATTGAG 1629
Query 1683 AGTAAATGGGGAGCTTCGAACTTTTCTCATGGAAGATCTGAGTCACCATGAACATTATCA 1742
| | ||||| ||||| |||||||||||||||| ||| ||| |||||||| ||| |||
Sbjct 1630 A-TGAATGGACAGCTTAGAACTTTTCTCATGGAGGATTTGAACCACCATGAGCATGCTCA 1688
Query 1743 CATGTTGCAAGTGTTGAGGAACTTGAAAA-CTGAGAT-AAGAGATGTAT 1789
||| ||||||||| |||| ||||| ||| ||||||| |||| ||||||
Sbjct 1689 CATATTGCAAGTGCTGAGAAACTT-AAACTCTGAGATGAAGA-ATGTAT 1735
> Ahg930618 jgi|Araly1|930618|scaffold_303075.1
Length=463
Score = 606 bits (328), Expect = 1e-172
Identities = 420/464 (91%), Gaps = 8/464 (2%)
Strand=Plus/Plus
Query 6 ACAGACAAAA-CATTTCTGCATGTT---ACATCGGACTCTCCTGTGTCCGAAACGCATCA 61
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1 ACAGACAAAACCATTTCTGCATGTTACAACATCGGACTCTCCTGTGTCCGAATCGCATCA 60
Query 62 AATTTCTGCAATCCATTTCTAAACTCAAGCGGCACATCACTCAGATCCACGCTTTTGTAA 121
||||||||| |||| || |||| ||||||| ||||||||||||||||||||||| ||||
Sbjct 61 AATTTCTGCTATCCGTTAGTAAATTCAAGCGACACATCACTCAGATCCACGCTTTCGTAA 120
Query 122 TCAGTACTGGTAATTTACTTAATGGAAGCTCTATTAGTCGAGATCTCATCGCTTCATGTG 181
| | ||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct 121 TTACTACTGGTAATTTACTCAATGGAAGCTCCATTAGTCGCGATCTCATTGCTTCATGTG 180
Query 182 GACGAATCGGTGAGATCTCTTATGCACGTAAGGTGTTCGACGAATTGCCGCAGAGGGGTG 241
||| |||||| ||||| |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 181 GACTAATCGGGGAGATTTCTTATGCACGTAAGGTGCTCGACGAATTGCCTCAGAGAAGTG 240
Query 242 TTTCTGTTTATAATTCCATGATTGTGGTTTATTCTCGTGGAAAAAATCCAGATGAGGTTT 301
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 241 TTTCTGTTTATAACTCCATGATTGTGGTTTATTCTCGTGGAAACAACCCAGATGAGGTTT 300
Query 302 TGCGACTTTATGATCAGATGATAGCTGAAAAAATTCAACCAGATAGCTCAACGTTCACTA 361
| |||||||||||||||||||| |||||||| | |||||||||||||| || |||||||
Sbjct 301 TACGACTTTATGATCAGATGATTGCTGAAAAGGTCCAACCAGATAGCTCGACTTTCACTA 360
Query 362 TGACGATCAAAGCGTGCTTAAGTGGTTTGGTTTTAGAGAAAGGAGAGGCTGTGTGG-TGT 420
|||||||||||||||| || |||||| ||| ||||||||||||||||||||||||| | |
Sbjct 361 TGACGATCAAAGCGTGTTTGAGTGGTATGGCTTTAGAGAAAGGAGAGGCTGTGTGGCT-T 419
Query 421 AAAGC-AGTGGACTTTGGGTATAAAAAT-GATGTCTTTGTTTGT 462
||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 420 AAAGCCAGTGGAATTTGGGTATAAAAATCGATGTCTTTGTTTGT 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5