BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25070.1 Length=1067 Score E Sequences producing significant alignments: (Bits) Value Ahg480014 jgi|Araly1|480014|fgenesh2_kg.3__2715__AT3G25070.1 1423 0.0 Ahg925684 jgi|Araly1|925684|scaffold_201245.1 305 3e-82 Ahg925867 jgi|Araly1|925867|scaffold_201428.1 87.9 1e-16 > Ahg480014 jgi|Araly1|480014|fgenesh2_kg.3__2715__AT3G25070.1 Length=1073 Score = 1423 bits (770), Expect = 0.0 Identities = 994/1094 (91%), Gaps = 48/1094 (4%) Strand=Plus/Plus Query 1 AAGGGTCAAAGAATACATAGCATCACCACTAGTCAACGCTTT--TATAA----AActtct 54 |||||||||||||| |||||||||| | ||||||||||||| ||||| ||||| Sbjct 1 AAGGGTCAAAGAATTCATAGCATCA-C-TTAGTCAACGCTTTGATATAACTTCTTCTTCT 58 Query 55 tcttcgtctcctctccttctcacatctctc--tc--tgtctttctctctcAAACCTAACA 110 |||||||||||||||||||||||||||||| || | ||||||||||||||||||| | Sbjct 59 TCTTCGTCTCCTCTCCTTCTCACATCTCTCTGTCTTTCTCTTTCTCTCTCAAACCTATC- 117 Query 111 AAAGCTTCAGACTTCAATTCTTTAGCTACCTCTCTCCCATGGCACGTTCGAATGTACCAA 170 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 118 AAAGCTTTAGACTTCAATTCTTTAGCTACCTCTCTCCCATGGCACGTTCGAATGTACCCA 177 Query 171 AATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTC 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTC 237 Query 231 GTAAGACTCGAGCACCCGGTAGCAAGATCATGAACCCGAATGACCCGGAGTATAACTCTG 290 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 238 GTAAGACTCGAGCACCCGGTGGCAAGATCATTAACCCGAATGACCCGGAGTATAACTCTG 297 Query 291 ACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTG 350 | |||||||||||||||||||||| | |||||| | ||||||||| |||||||||||| Sbjct 298 ATTCTCAATCACAAGCTCCTCCTC--C-TCCTTC--C-AGAACCAAAGCTGAGCAAGTTG 351 Query 351 A-CACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTGAAACAG 409 | | ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct 352 AGC-CGGTTAGAAGATCGCGTGAGCATACGAGAAGCCGAGAAGAGAGCGAGTTGAAGCAG 410 Query 410 TTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCT 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 TTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCT 470 Query 470 CAGAACAATAGTTATGACAACAAGTCACCTTTGCATAAGAATTCTTATGATGGTACTGGA 529 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 471 CAGAACAATAGTTATGACAA---GTCACCTTTGCATAAGAATTCATATGATGGTACTGGA 527 Query 530 AAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAGTCCTGAAAAAGTCACAGTG 589 |||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| Sbjct 528 AAATCTAGGCCTAAACCTGCTAACCTTAGAGCTGATGAAAGCCCTGAAAAAGTCACAGTG 587 Query 590 GTGCCTAAATTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGACGGATACACGCAT 649 ||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 588 GTGCCGAAGTTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGATGGATACACACAT 647 Query 650 ATCTTCAATAAAGTCCGTGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGA 709 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 648 ATCTTCAATAAAGTCCGCGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGA 707 Query 710 ACGCCGACTCATC-AAAGCTCCCGTAACCCGAACAACACTTCCTCATGTTGCTGCTTTGG 768 || |||||||||| ||| |||| |||| || |||||||||||| |||||||||||||||| Sbjct 708 ACACCGACTCATCCAAA-CTCCAGTAAACCTAACAACACTTCCACATGTTGCTGCTTTGG 766 Query 769 CTTTGGAGGAAAATGAAAGGGA-------CCGGAAGATTGTATATAGTTATCGAGAAATC 821 |||||||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 767 CTTTGGAGGAAAATGAAAGGGAAATGTTTCCGGAAGATTGTATATACTTATTGAGAAATC 826 Query 822 AGTGTGTAATCTTGATGATTAGAC--AT--TCGTGCTTCTTTAGATGAAATAAGGCATAA 877 ||||||||||||| ||||| |||| | ||| |||||||||||||||||||||||| | Sbjct 827 AGTGTGTAATCTTAATGATCAGACCGACGATCGAGCTTCTTTAGATGAAATAAGGCATCA 886 Query 878 GT-CTCACTTGCATAAGATTTTTATAGTATAATTTTTGTATGTATATTTTGCAATTCTTC 936 || | ||||||||||||||||| |||||||| |||| |||||||| ||||| |||| ||| Sbjct 887 GTAC-CACTTGCATAAGATTTT-ATAGTATAGTTTT-GTATGTATCTTTTGTAATTTTTC 943 Query 937 CTTAATACTTTTGGTGTTTT--CATAAGACACATTCCAGTTTCGGATCTGCTTGCAGATG 994 ||| |||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||| Sbjct 944 CTTGATACTTTTGGTGTTTTTTCATAAGACACAATCTAGTTTTGGACCTGCTTGCAGATG 1003 Query 995 CATTATATCTTGCTTGGTACGGCCTGAGTGATTTGGT-AACTGATTTGATATGAATCAGA 1053 |||||||||||| | ||| |||||| ||||||| ||| ||||||||| ||||||| Sbjct 1004 CATTATATCTTG---G-TACTGCCTGACCAATTTGGTTAACCGATTTGATACAAATCAGA 1059 Query 1054 GATATTTGGGTACC 1067 |||||||||||||| Sbjct 1060 GATATTTGGGTACC 1073 > Ahg925684 jgi|Araly1|925684|scaffold_201245.1 Length=577 Score = 305 bits (165), Expect = 3e-82 Identities = 250/288 (87%), Gaps = 17/288 (6%) Strand=Plus/Plus Query 284 AACTCTGACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAG 343 ||||| || || ||||||||||||||| | | |||| | |||||||||||||||||||| Sbjct 177 AACTCGGATTCGCAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAG 230 Query 344 CAAGTTGACACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 403 ||||||| | | | || |||||||||||||||||||||||||||||||||||| Sbjct 231 CAAGTTG--A----T--CCG-TCGCGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 281 Query 404 AAACAGTTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGA 463 || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 282 AAGCAGTTTGGTGATGCTAGTGGTTCATCAAATGAGGCTGCTAACAAAAGACAAGGAAGG 341 Query 464 GCTTCTCAGAACAATAGTTATGACAACAAGTCACCT-TTGCATAAGAATTCTTATGATGG 522 ||||||||||||| |||| || | ||||||||| | |||||||||||||| |||||||| Sbjct 342 GCTTCTCAGAACAGTAGTAATTATGACAAGTCAC-TGTTGCATAAGAATTCATATGATGG 400 Query 523 TACTGGAAAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAG 570 ||||||| ||| | |||||||||| |||||||||||||||||||||| Sbjct 401 CACTGGAAGATCCAAGCCTAAACCTGCCAACCTTAGAGCTGATGAAAG 448 > Ahg925867 jgi|Araly1|925867|scaffold_201428.1 Length=281 Score = 87.9 bits (47), Expect = 1e-16 Identities = 91/109 (83%), Gaps = 15/109 (14%) Strand=Plus/Plus Query 296 CAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTGA-CAC 354 ||||||||||||||| | | |||| | |||||||||||||||||||||||||||| | | Sbjct 187 CAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAGCAAGTTGATC-C 239 Query 355 GGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 403 | | | | | |||||| |||||||||||||||||||||||||||| Sbjct 240 G-TC-GC-G-T---GTGAGCTTATGAGAAGCCGAGAAGAGAGCGAGTTG 281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39724079514 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5