BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25070.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480014 jgi|Araly1|480014|fgenesh2_kg.3__2715__AT3G25070.1 1423 0.0
Ahg925684 jgi|Araly1|925684|scaffold_201245.1 305 3e-82
Ahg925867 jgi|Araly1|925867|scaffold_201428.1 87.9 1e-16
> Ahg480014 jgi|Araly1|480014|fgenesh2_kg.3__2715__AT3G25070.1
Length=1073
Score = 1423 bits (770), Expect = 0.0
Identities = 994/1094 (91%), Gaps = 48/1094 (4%)
Strand=Plus/Plus
Query 1 AAGGGTCAAAGAATACATAGCATCACCACTAGTCAACGCTTT--TATAA----AActtct 54
|||||||||||||| |||||||||| | ||||||||||||| ||||| |||||
Sbjct 1 AAGGGTCAAAGAATTCATAGCATCA-C-TTAGTCAACGCTTTGATATAACTTCTTCTTCT 58
Query 55 tcttcgtctcctctccttctcacatctctc--tc--tgtctttctctctcAAACCTAACA 110
|||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
Sbjct 59 TCTTCGTCTCCTCTCCTTCTCACATCTCTCTGTCTTTCTCTTTCTCTCTCAAACCTATC- 117
Query 111 AAAGCTTCAGACTTCAATTCTTTAGCTACCTCTCTCCCATGGCACGTTCGAATGTACCAA 170
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 AAAGCTTTAGACTTCAATTCTTTAGCTACCTCTCTCCCATGGCACGTTCGAATGTACCCA 177
Query 171 AATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTC 237
Query 231 GTAAGACTCGAGCACCCGGTAGCAAGATCATGAACCCGAATGACCCGGAGTATAACTCTG 290
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 238 GTAAGACTCGAGCACCCGGTGGCAAGATCATTAACCCGAATGACCCGGAGTATAACTCTG 297
Query 291 ACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTG 350
| |||||||||||||||||||||| | |||||| | ||||||||| ||||||||||||
Sbjct 298 ATTCTCAATCACAAGCTCCTCCTC--C-TCCTTC--C-AGAACCAAAGCTGAGCAAGTTG 351
Query 351 A-CACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTGAAACAG 409
| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 352 AGC-CGGTTAGAAGATCGCGTGAGCATACGAGAAGCCGAGAAGAGAGCGAGTTGAAGCAG 410
Query 410 TTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCT 470
Query 470 CAGAACAATAGTTATGACAACAAGTCACCTTTGCATAAGAATTCTTATGATGGTACTGGA 529
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 471 CAGAACAATAGTTATGACAA---GTCACCTTTGCATAAGAATTCATATGATGGTACTGGA 527
Query 530 AAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAGTCCTGAAAAAGTCACAGTG 589
|||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 528 AAATCTAGGCCTAAACCTGCTAACCTTAGAGCTGATGAAAGCCCTGAAAAAGTCACAGTG 587
Query 590 GTGCCTAAATTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGACGGATACACGCAT 649
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 588 GTGCCGAAGTTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGATGGATACACACAT 647
Query 650 ATCTTCAATAAAGTCCGTGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGA 709
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ATCTTCAATAAAGTCCGCGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGA 707
Query 710 ACGCCGACTCATC-AAAGCTCCCGTAACCCGAACAACACTTCCTCATGTTGCTGCTTTGG 768
|| |||||||||| ||| |||| |||| || |||||||||||| ||||||||||||||||
Sbjct 708 ACACCGACTCATCCAAA-CTCCAGTAAACCTAACAACACTTCCACATGTTGCTGCTTTGG 766
Query 769 CTTTGGAGGAAAATGAAAGGGA-------CCGGAAGATTGTATATAGTTATCGAGAAATC 821
|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 767 CTTTGGAGGAAAATGAAAGGGAAATGTTTCCGGAAGATTGTATATACTTATTGAGAAATC 826
Query 822 AGTGTGTAATCTTGATGATTAGAC--AT--TCGTGCTTCTTTAGATGAAATAAGGCATAA 877
||||||||||||| ||||| |||| | ||| |||||||||||||||||||||||| |
Sbjct 827 AGTGTGTAATCTTAATGATCAGACCGACGATCGAGCTTCTTTAGATGAAATAAGGCATCA 886
Query 878 GT-CTCACTTGCATAAGATTTTTATAGTATAATTTTTGTATGTATATTTTGCAATTCTTC 936
|| | ||||||||||||||||| |||||||| |||| |||||||| ||||| |||| |||
Sbjct 887 GTAC-CACTTGCATAAGATTTT-ATAGTATAGTTTT-GTATGTATCTTTTGTAATTTTTC 943
Query 937 CTTAATACTTTTGGTGTTTT--CATAAGACACATTCCAGTTTCGGATCTGCTTGCAGATG 994
||| |||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||
Sbjct 944 CTTGATACTTTTGGTGTTTTTTCATAAGACACAATCTAGTTTTGGACCTGCTTGCAGATG 1003
Query 995 CATTATATCTTGCTTGGTACGGCCTGAGTGATTTGGT-AACTGATTTGATATGAATCAGA 1053
|||||||||||| | ||| |||||| ||||||| ||| ||||||||| |||||||
Sbjct 1004 CATTATATCTTG---G-TACTGCCTGACCAATTTGGTTAACCGATTTGATACAAATCAGA 1059
Query 1054 GATATTTGGGTACC 1067
||||||||||||||
Sbjct 1060 GATATTTGGGTACC 1073
> Ahg925684 jgi|Araly1|925684|scaffold_201245.1
Length=577
Score = 305 bits (165), Expect = 3e-82
Identities = 250/288 (87%), Gaps = 17/288 (6%)
Strand=Plus/Plus
Query 284 AACTCTGACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAG 343
||||| || || ||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct 177 AACTCGGATTCGCAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAG 230
Query 344 CAAGTTGACACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 403
||||||| | | | || ||||||||||||||||||||||||||||||||||||
Sbjct 231 CAAGTTG--A----T--CCG-TCGCGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 281
Query 404 AAACAGTTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGA 463
|| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 282 AAGCAGTTTGGTGATGCTAGTGGTTCATCAAATGAGGCTGCTAACAAAAGACAAGGAAGG 341
Query 464 GCTTCTCAGAACAATAGTTATGACAACAAGTCACCT-TTGCATAAGAATTCTTATGATGG 522
||||||||||||| |||| || | ||||||||| | |||||||||||||| ||||||||
Sbjct 342 GCTTCTCAGAACAGTAGTAATTATGACAAGTCAC-TGTTGCATAAGAATTCATATGATGG 400
Query 523 TACTGGAAAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAG 570
||||||| ||| | |||||||||| ||||||||||||||||||||||
Sbjct 401 CACTGGAAGATCCAAGCCTAAACCTGCCAACCTTAGAGCTGATGAAAG 448
> Ahg925867 jgi|Araly1|925867|scaffold_201428.1
Length=281
Score = 87.9 bits (47), Expect = 1e-16
Identities = 91/109 (83%), Gaps = 15/109 (14%)
Strand=Plus/Plus
Query 296 CAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTGA-CAC 354
||||||||||||||| | | |||| | |||||||||||||||||||||||||||| | |
Sbjct 187 CAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAGCAAGTTGATC-C 239
Query 355 GGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 403
| | | | | |||||| ||||||||||||||||||||||||||||
Sbjct 240 G-TC-GC-G-T---GTGAGCTTATGAGAAGCCGAGAAGAGAGCGAGTTG 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5