BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25080.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947508 jgi|Araly1|947508|scaffold_703737.1 113 2e-24
Ahg915202 jgi|Araly1|915202|Al_scaffold_0009_171 86.1 4e-16
Ahg337098 jgi|Araly1|337098|fgenesh1_pg.C_scaffold_1003663 71.3 1e-11
Ahg931863 jgi|Araly1|931863|scaffold_304320.1 58.4 1e-07
Ahg921221 jgi|Araly1|921221|scaffold_102502.1 58.4 1e-07
> Ahg947508 jgi|Araly1|947508|scaffold_703737.1
Length=776
Score = 113 bits (61), Expect = 2e-24
Identities = 196/258 (76%), Gaps = 22/258 (9%)
Strand=Plus/Plus
Query 165 CTTAGTCT-TACTCTATGCTACTCTGGGCCTTCATCGTTACAATTTGCTTCAGGGTACA- 222
|||||| | | || ||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 228 CTTAGT-TATCCTTTATGCTAGGATGGGCCTTCATCGTTACAATTTGCTTCAGGGTA-AG 285
Query 223 AAGTTT-CAGCTCAATCGCGTAAAGAAGTACGTTTTCTCAACGGGTGCTGCTGCCT-C-- 278
|| ||| |||||||||||||||||||| ||| | | ||| | ||||||| | |
Sbjct 286 AA-TTTACAGCTCAATCGCGTAAAGAAATACAATATGAGTACGCATTCTGCTGCTTGCAA 344
Query 279 TTACTACATAACTTTGGATGCAATGGAACCAGCTGCTGACTCCTCCTCTTCGCTTCAAAC 338
||||||||| ||||||| ||| ||||| || ||| | | | | ||| || |||
Sbjct 345 TTACTACATTACTTTGGTTGCTATGGATCCTGCT-C-G-CAGCAAA-CTT---TT-AAA- 395
Query 339 CTTTC-AGACTGAAGTAACAGAAGATA-GTTTTGGCAAATTTATTCTGACGTGCAATATT 396
|||| ||||| |||| ||||| | | |||||||| |||||| |||||| | |||||
Sbjct 396 -TTTCCAGACTAAAGTTGGTGAAGA-ACGGTTTGGCAAGTTTATTTTGACGTCCGATATT 453
Query 397 GCAAGAATTCGAGGGGAA 414
|| ||| ||||||||||
Sbjct 454 GCTAGACCTCGAGGGGAA 471
> Ahg915202 jgi|Araly1|915202|Al_scaffold_0009_171
Length=486
Score = 86.1 bits (46), Expect = 4e-16
Identities = 51/53 (96%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 526 AATGACTGGATTCGTCTATATTTGGAACTTGCTGTTGCCACCA-CTGATAGGA 577
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 394 AATGACTGGATTCGTCTATATTTGGAACTTGCTGTTGCCAC-AGCTGATAGGA 445
> Ahg337098 jgi|Araly1|337098|fgenesh1_pg.C_scaffold_1003663
Length=1239
Score = 71.3 bits (38), Expect = 1e-11
Identities = 143/191 (75%), Gaps = 17/191 (9%)
Strand=Plus/Plus
Query 452 GCTTGCCGGAGTGTCCGCCAGAGAATCCTTTTGAA-AT----A----TATTATCTGATGA 502
||||||| ||||| ||||||||||||||||| || || | | |||| || |||
Sbjct 464 GCTTGCCTGAGTGGCCGCCAGAGAATCCTTTCAAAGATACGAAGCGGTTTTATGTGGTGA 523
Query 503 AGGATTCGGAGCTCCAAGA-AA-AT-AATGACTGGATTCGTCTATATTTGGAACTTGCTG 559
|| | || ||||| ||||| || | ||||||||||||||||| |||||||||||||| |
Sbjct 524 AGAAGTCAGAGCTGCAAGACAATGTCAATGACTGGATTCGTCTTTATTTGGAACTTGCGG 583
Query 560 TTGCCACCACTGATA-GGAACAGGGAAGCTAGTGATTTTGGTCTCTCCAACTTGGAGATT 618
|| | | || | | |||| | || ||| | |||||||||||||||||||
Sbjct 584 TT---TCTTC-GAAACGTAACATGTTTTTTAAAGATGAAGATCTCTCCAACTTGGAGATT 639
Query 619 GTCAACGTGGC 629
|||||||||||
Sbjct 640 GTCAACGTGGC 650
> Ahg931863 jgi|Araly1|931863|scaffold_304320.1
Length=561
Score = 58.4 bits (31), Expect = 1e-07
Identities = 52/61 (85%), Gaps = 6/61 (10%)
Strand=Plus/Plus
Query 662 ATGCAATTTTCTACATTAGGTACAAGGAC--TTGTACGAGGCTCGG-CTTGGTAATGCTG 718
||||||||||||||||||||||||||||| ||| | |||||||| || ||| ||| ||
Sbjct 375 ATGCAATTTTCTACATTAGGTACAAGGACCCTTGCA--AGGCTCGGGCT-GGTGATGATG 431
Query 719 T 719
|
Sbjct 432 T 432
> Ahg921221 jgi|Araly1|921221|scaffold_102502.1
Length=1022
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 270 TGCTGCCTCTTACTACATAACTTTGGATGCA 300
|||||||||||||||||||||||||||||||
Sbjct 260 TGCTGCCTCTTACTACATAACTTTGGATGCA 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5