BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25080.1 Length=976 Score E Sequences producing significant alignments: (Bits) Value Ahg947508 jgi|Araly1|947508|scaffold_703737.1 113 2e-24 Ahg915202 jgi|Araly1|915202|Al_scaffold_0009_171 86.1 4e-16 Ahg337098 jgi|Araly1|337098|fgenesh1_pg.C_scaffold_1003663 71.3 1e-11 Ahg931863 jgi|Araly1|931863|scaffold_304320.1 58.4 1e-07 Ahg921221 jgi|Araly1|921221|scaffold_102502.1 58.4 1e-07 > Ahg947508 jgi|Araly1|947508|scaffold_703737.1 Length=776 Score = 113 bits (61), Expect = 2e-24 Identities = 196/258 (76%), Gaps = 22/258 (9%) Strand=Plus/Plus Query 165 CTTAGTCT-TACTCTATGCTACTCTGGGCCTTCATCGTTACAATTTGCTTCAGGGTACA- 222 |||||| | | || ||||||| ||||||||||||||||||||||||||||||||| | Sbjct 228 CTTAGT-TATCCTTTATGCTAGGATGGGCCTTCATCGTTACAATTTGCTTCAGGGTA-AG 285 Query 223 AAGTTT-CAGCTCAATCGCGTAAAGAAGTACGTTTTCTCAACGGGTGCTGCTGCCT-C-- 278 || ||| |||||||||||||||||||| ||| | | ||| | ||||||| | | Sbjct 286 AA-TTTACAGCTCAATCGCGTAAAGAAATACAATATGAGTACGCATTCTGCTGCTTGCAA 344 Query 279 TTACTACATAACTTTGGATGCAATGGAACCAGCTGCTGACTCCTCCTCTTCGCTTCAAAC 338 ||||||||| ||||||| ||| ||||| || ||| | | | | ||| || ||| Sbjct 345 TTACTACATTACTTTGGTTGCTATGGATCCTGCT-C-G-CAGCAAA-CTT---TT-AAA- 395 Query 339 CTTTC-AGACTGAAGTAACAGAAGATA-GTTTTGGCAAATTTATTCTGACGTGCAATATT 396 |||| ||||| |||| ||||| | | |||||||| |||||| |||||| | ||||| Sbjct 396 -TTTCCAGACTAAAGTTGGTGAAGA-ACGGTTTGGCAAGTTTATTTTGACGTCCGATATT 453 Query 397 GCAAGAATTCGAGGGGAA 414 || ||| |||||||||| Sbjct 454 GCTAGACCTCGAGGGGAA 471 > Ahg915202 jgi|Araly1|915202|Al_scaffold_0009_171 Length=486 Score = 86.1 bits (46), Expect = 4e-16 Identities = 51/53 (96%), Gaps = 2/53 (4%) Strand=Plus/Plus Query 526 AATGACTGGATTCGTCTATATTTGGAACTTGCTGTTGCCACCA-CTGATAGGA 577 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 394 AATGACTGGATTCGTCTATATTTGGAACTTGCTGTTGCCAC-AGCTGATAGGA 445 > Ahg337098 jgi|Araly1|337098|fgenesh1_pg.C_scaffold_1003663 Length=1239 Score = 71.3 bits (38), Expect = 1e-11 Identities = 143/191 (75%), Gaps = 17/191 (9%) Strand=Plus/Plus Query 452 GCTTGCCGGAGTGTCCGCCAGAGAATCCTTTTGAA-AT----A----TATTATCTGATGA 502 ||||||| ||||| ||||||||||||||||| || || | | |||| || ||| Sbjct 464 GCTTGCCTGAGTGGCCGCCAGAGAATCCTTTCAAAGATACGAAGCGGTTTTATGTGGTGA 523 Query 503 AGGATTCGGAGCTCCAAGA-AA-AT-AATGACTGGATTCGTCTATATTTGGAACTTGCTG 559 || | || ||||| ||||| || | ||||||||||||||||| |||||||||||||| | Sbjct 524 AGAAGTCAGAGCTGCAAGACAATGTCAATGACTGGATTCGTCTTTATTTGGAACTTGCGG 583 Query 560 TTGCCACCACTGATA-GGAACAGGGAAGCTAGTGATTTTGGTCTCTCCAACTTGGAGATT 618 || | | || | | |||| | || ||| | ||||||||||||||||||| Sbjct 584 TT---TCTTC-GAAACGTAACATGTTTTTTAAAGATGAAGATCTCTCCAACTTGGAGATT 639 Query 619 GTCAACGTGGC 629 ||||||||||| Sbjct 640 GTCAACGTGGC 650 > Ahg931863 jgi|Araly1|931863|scaffold_304320.1 Length=561 Score = 58.4 bits (31), Expect = 1e-07 Identities = 52/61 (85%), Gaps = 6/61 (10%) Strand=Plus/Plus Query 662 ATGCAATTTTCTACATTAGGTACAAGGAC--TTGTACGAGGCTCGG-CTTGGTAATGCTG 718 ||||||||||||||||||||||||||||| ||| | |||||||| || ||| ||| || Sbjct 375 ATGCAATTTTCTACATTAGGTACAAGGACCCTTGCA--AGGCTCGGGCT-GGTGATGATG 431 Query 719 T 719 | Sbjct 432 T 432 > Ahg921221 jgi|Araly1|921221|scaffold_102502.1 Length=1022 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 270 TGCTGCCTCTTACTACATAACTTTGGATGCA 300 ||||||||||||||||||||||||||||||| Sbjct 260 TGCTGCCTCTTACTACATAACTTTGGATGCA 290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36254894067 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5