BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25110.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480016 jgi|Araly1|480016|fgenesh2_kg.3__2717__AT3G25110.1 2178 0.0
Ahg333029 jgi|Araly1|333029|fgenesh1_pm.C_scaffold_9000057 769 0.0
> Ahg480016 jgi|Araly1|480016|fgenesh2_kg.3__2717__AT3G25110.1
Length=1434
Score = 2178 bits (1179), Expect = 0.0
Identities = 1328/1399 (95%), Gaps = 14/1399 (1%)
Strand=Plus/Plus
Query 209 AAAAGATGTTGAAGCTTTCGTGTAATGTGACTGATTCTAAGTTACAGAGAAGCTTACTCT 268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 47 AAAAGATGTTGAAGCTTTCGTGTAATGTGACTGATTCTAAGTTACAGAGAAGCTTATTGT 106
Query 269 TCTTCTCCCATTCAT-ATCGATCTGATCCGGTGAATTTCATCCGTCGGAGAATTGTCTCT 327
||||||| ||||| | ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 107 TCTTCTCGCATTC-TCATCGATCTGATCCGGTGAATTTCATTCGTCGGAGAATCGTCTCT 165
Query 328 TGTTCTCAGACGAAGAAGACAGGTTTGGTTCCTTTGCGTGCTGTTGTATCTGCTGATCAA 387
|||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 166 TGTTCTCAGACGAAGAAGACGGGTTTGGTTCCTTTGCGTGCGGTTGTATCTACTGATCAA 225
Query 388 GGAAGTGTGGTTCAAGGTTTGGCTACTCTCGCGGATCAGCTCCGATTAGGTAGTTTGACT 447
|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 226 GGAACTGTGATTCAAGGTTTGGGTACTCTCGCGGATCAGCTCCGATTAGGTAGTTTGACG 285
Query 448 GAAGATGGTTTATCTTATAAAGAGAAGTTTGTTGTTAGATCTTACGAAGTGGGTAGTAAC 507
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 GAAGATGGTTTATCGTATAAAGAGAAGTTTGTTGTTAGATCTTACGAAGTCGGTAGTAAC 345
Query 508 AAAACCGCTACTGTTGAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCA 567
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AAAACCGCTACCATTGAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCA 405
Query 568 CAAAGTGTTGGTTTTTCGACTGATGGGTTTGCAACAACAACTACTATGAGGAAGTTGCAT 627
||||||||||| |||||||||||||| |||||||||||| | ||||||||||| ||||||
Sbjct 406 CAAAGTGTTGGATTTTCGACTGATGGATTTGCAACAACACCAACTATGAGGAAATTGCAT 465
Query 628 CTCATTTGGGTTACTGCGAGAATGCATATCGAGATCTATAAGTACCCTGCTTGGGGTGAT 687
||||||||||||||||| |||||||| || |||||||| || ||||||||||||||||||
Sbjct 466 CTCATTTGGGTTACTGCAAGAATGCACATTGAGATCTACAAATACCCTGCTTGGGGTGAT 525
Query 688 GTGGTTGAGATAGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGG 747
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GTGGTTGAGATAGAGACATGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGG 585
Query 748 ATTCTTAAGGATTCTGTCACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATG 807
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATTCTTAAGGATTGTGTCACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATG 645
Query 808 ATGAACCAAGACACGAGACGGCTTCAGAAAGTTTCTGATGATGTTCGGGACGAGTACTTG 867
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATGAACCAAGACACAAGACGGCTTCAGAAAGTTTCTGATGATGTTCGGGACGAGTACTTG 705
Query 868 GTCTTCTGTCCTCAAGAACCGAGGTTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAG 927
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 706 GTCTTCTGTCCTCAAGAACCGAGATTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAG 765
Query 928 AAAATCCCGAAACTCGAAGATCCGGCTCAGTATTCAATGATTGGGCTTAAGCCTAGACGA 987
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 766 AAAATCCCGAAACTCGAAGATCCGGCTCAGTATTCGATGATTGGGCTTAAGCCTAGACGA 825
Query 988 GCTGATCTCGACATGAACCAGCATGTCAATAATGTCACCTATATTGGATGGGTTCTCGAG 1047
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 826 GCTGATCTCGACATGAACCAGCATGTGAATAATGTCACCTATATTGGATGGGTTCTCGAG 885
Query 1048 AGCATACCACAAGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTATAGA 1107
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 886 AGCATACCGCAAGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTACAGA 945
Query 1108 AGAGAATGTCAACAAGACGATGTGGTGGATTCACTCACCACCACCACCTCTGAAATTGGT 1167
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 946 AGAGAATGTCAACAAGACGATGTGGTGGATTCACT------CACCACCTCGGAAATCGGT 999
Query 1168 GGAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCAC 1227
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GCAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCAC 1059
Query 1228 CTCCTGAGGTTGTCTGGAGATGGTCAGGAGATCAACCGCGGGACAACTCTGTGGAGAAAG 1287
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1060 CTCCTGAGGTTGTCTGGAGATGGCCAGGAGATCAACCGCGGGACAACCCTGTGGAGAAAG 1119
Query 1288 AAGCCTTCAAGTTAAGAAATAGACAATGTCTTTAGCCATTTTGTTCTCAAGTTTCCATCA 1347
||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1120 AAGCCGTCAAGATAAGAAATAGACAATCTCTTAAGCCATTTTGTTCTCAAGTTTCCATCA 1179
Query 1348 TCTCAATGAAGATTTCGCTTCACGAGTCTGAGCAGGTCTCCAtttttttCTCTTTCAAGT 1407
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 1180 TCTCAATGAAGATTTCGCTTCACGAGTCTGAGCTGGTCTC-ATTTTTTTCTCTTTCAAAT 1238
Query 1408 TTGGGTTAGACTAGAGGGAACTGGATTGTTGGAGTATTAATCTTTGTTGAATTTCATTAT 1467
|||||||||| |||||||||| ||||||||||||| | ||||||||||| || |||||
Sbjct 1239 TTGGGTTAGAATAGAGGGAACCAGATTGTTGGAGTA--A-TCTTTGTTGAACTTGATTAT 1295
Query 1468 GTTTGTTCATGTTTTTGTACAAATTTTGGGGATTTAGCCAAACCCATATCGTCTTTGGTC 1527
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1296 GTTTGTTCATGTTTTTGTACAAATTTTGGGGATTTAGCCAAACCCATATCTTCTTTGGTC 1355
Query 1528 TTGTCTTGTGCCTGCGTGTATTTTTAATCTATCCGTTCAAAACACAGA--TTGTTCATTA 1585
||||||||||||||||||||||| |||| ||||| ||| ||||||| | |||||||| |
Sbjct 1356 TTGTCTTGTGCCTGCGTGTATTTCTAATTTATCCTTTCCAAACACAAACATTGTTCATCA 1415
Query 1586 GATGTTTTATATAAACAGA 1604
|||||||||||||||||||
Sbjct 1416 GATGTTTTATATAAACAGA 1434
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 86 TTCTTCTTCACCTCGGACCCATCGGAGAGA 115
||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCACCTCGGACCCATCGGAGAGA 30
> Ahg333029 jgi|Araly1|333029|fgenesh1_pm.C_scaffold_9000057
Length=1104
Score = 769 bits (416), Expect = 0.0
Identities = 754/912 (83%), Gaps = 44/912 (5%)
Strand=Plus/Plus
Query 418 GCGGATCAG-CTCCGATTAGGTAGTTTGACT-GAAGAT-GGTTTATCTTATAAAGAGAAG 474
||||||| | |||||||| ||| | |||| | | |||| ||||| |||||||| ||||||
Sbjct 202 GCGGATC-GTCTCCGATTTGGTCGATTGA-TGGCAGATGGGTTT-TCTTATAAGGAGAAG 258
Query 475 TTTGTTGTTAG-ATCTTACGAAG-TGGGTAGTAACAAAACCGCTACTGTTGAAACCATTG 532
|| ||||||| | | || |||| |||| | ||||||||| || ||||||||||| ||||
Sbjct 259 TTCATTGTTAGAAGC-TATGAAGTTGGG-ATTAACAAAACTGCCACTGTTGAAACAATTG 316
Query 533 CTAATCTTTTACAGGAGGTGGGATGTAATCATG--CACAAAGTGTTGGTTTTTCGACTGA 590
|||||||||| ||||| |||| ||||||||||| || ||| ||||| |||||||||||
Sbjct 317 CTAATCTTTTGCAGGAAGTGGCATGTAATCATGTTCAGAAA--GTTGGATTTTCGACTGA 374
Query 591 TGGGTTTGCAACAACAAC-TACTATGAGGAAGTTGCATCTCATTTGGGTTACTGCGAGAA 649
||||||||| ||||| || |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 375 TGGGTTTGCTACAAC-ACTTACTATGAGGAAATTGCATCTCATTTGGGTTACTGCAAGAA 433
Query 650 TGCATATCGAGATCTATAAGTACCCTGCTTGGGGTGATGTGGTTGAGATAGAGACTTGGT 709
|||| || ||||| || ||||| || |||||| |||||||||||||||| ||||||||||
Sbjct 434 TGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAGATTGAGACTTGGT 493
Query 710 GTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGGATTCTT-AAGGATTCTGTC-AC 767
|||||||||||||||||||||| || || |||||||||||| || || |||| || | ||
Sbjct 494 GTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATT-TTGAAAGATTGTG-CGAC 551
Query 768 TGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATGATGAACCAAGACACGAGACG 827
|||||||| | ||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 552 CGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCAAGACACAAGGCG 611
Query 828 GCTTCAGAA-AGTTTCTGATGATGTTCGGGACGAGTACTTGGTCTTCTGTCCTCAAGAAC 886
|||||| || |||| | ||||| |||||||||||||| ||||| |||||||||| ||| |
Sbjct 612 GCTTCA-AAGAGTTACAGATGAAGTTCGGGACGAGTATTTGGTTTTCTGTCCTCGAGAGC 670
Query 887 CGAGGTTAGCATTTCCGGAAGAGAATAACAGA-AGCTTGAAGAAAATCCCGAAACTCGAA 945
| || |||| ||||| || ||||| || | | ||||| ||||| ||||||||||| |||
Sbjct 671 CTAGACTAGCGTTTCCAGAGGAGAACAATA-ACAGCTTAAAGAAGATCCCGAAACTGGAA 729
Query 946 GATCCGGCTCAGTATTCAATGATTGGGCTTAAGCCTAGACGAGCTGATCTCGACATGAAC 1005
||||| ||||||||||| ||| | |||||||||||||||||||||||||| |||||||||
Sbjct 730 GATCCTGCTCAGTATTCTATGCTAGGGCTTAAGCCTAGACGAGCTGATCTAGACATGAAC 789
Query 1006 CAGCATGTCAATAATGTCACCTATATTGGATGGGTTCTCGAGAGCATACCACAAGAAATT 1065
|||||||| |||||||||||||| ||||||||||| || ||||||||||| |||||| |
Sbjct 790 CAGCATGTGAATAATGTCACCTACATTGGATGGGTCCTTGAGAGCATACCGCAAGAAGTC 849
Query 1066 GTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTATAGAAGAGAATGTCAACAAGAC 1125
||||||||||||||||| | || |||||||| ||||| ||||||||||| || |||||
Sbjct 850 ATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATGCCAGCAAGAT 909
Query 1126 GATGTGGTGGATTCACTCACCACC----A--CCACC--T----C--TG--AAA--TTGGT 1167
|| | || |||||||| |||||| | || || | | || ||| || |
Sbjct 910 GACATTGTAGATTCACTTACCACCTCTGAAACCCCCAATGAGGCGGTGTCAAAGCTTACT 969
Query 1168 GGAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCAC 1227
|| ||||| || ||| ||||||| ||| ||| | ||||| || ||||| ||||||||
Sbjct 970 GGGACCAACGGATCTACCACGTCAAGCAAACAAGAACACAATGAGAGCCAATTCTTGCAT 1029
Query 1228 CTCCTGAGGTTGTCTGGAGATGGTCAGGAGATCAACCGCGGGACAACTCTGTGGAGAAAG 1287
|| |||||||||| | | |||| ||||||||||| || |||| ||| | ||| |||||
Sbjct 1030 ATCTTGAGGTTGTCAGAAAATGGACAGGAGATCAATCGTGGGAGAACCCAATGGCGAAAG 1089
Query 1288 AAG-CCTTCAAG 1298
||| ||| ||||
Sbjct 1090 AAGTCCT-CAAG 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5