BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25120.1 Length=866 Score E Sequences producing significant alignments: (Bits) Value Ahg480017 jgi|Araly1|480017|fgenesh2_kg.3__2718__AT3G25120.1 996 0.0 > Ahg480017 jgi|Araly1|480017|fgenesh2_kg.3__2718__AT3G25120.1 Length=810 Score = 996 bits (539), Expect = 0.0 Identities = 606/639 (95%), Gaps = 2/639 (0%) Strand=Plus/Plus Query 1 GATTCACAACACCGCATTGAAATTGGAGTTCTCTCGAAGTTCCGTGGCGTCAAAAATGGC 60 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 1 GATTCACAACACCGCATTGAAATTGGAG-TCTCTC-AAGTTCCGTGGCGTCAAAAATGGC 58 Query 61 GTTGGGTGATCGGAAATCCCCAGAACAAACAAATCAGGCGTTATCTCCTCCGACGCCTAT 120 || ||||||||| |||| ||||| | ||| ||||| |||| |||||||| ||||| || Sbjct 59 GTCAGGTGATCGGGAATCTCCAGATCGAACGAATCAACCGTTGTCTCCTCCAACGCCGAT 118 Query 121 TGTGCAGGAAAATGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 180 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TGTGCAAGAAAACGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 178 Query 181 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 238 Query 241 TGTTTACGCTGCTAATTTTGCTATTGTCGCCGGTTGCTATTGCGGAGCTCGTGAATCTGT 300 |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 239 TGTTTACGCTACTAATTGTGCTATTGTCGCTGGTTGCTATTGCGGAGCTCGTGAATCTGT 298 Query 301 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 358 Query 361 TAGTGGTGCTTTGCTTGGAAGACTTCAAGGAGGTCCTAAGGGTGCGATTCGCTACTCTCT 420 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 359 CAGTGGTGCTTTGCTTGGACGACTTCAAGGAGGTCCTCAGGGTGCGATTCGCTACTCTCT 418 Query 421 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTACCCTTAAAGGAAAACCAATGTT 480 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 419 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTTCCCTTAAAGCAAAACCAATGTT 478 Query 481 AGAGAGCTACCGTAACATGGAGTCATTCAAGTTACCTGAATGGTCTCCTATTAAAGTCCT 540 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct 479 AGAGAGCTACCGTAACATGGAGTCGTTCAAATTACCTGAATGGTCTCCTATTAAAATCCT 538 Query 541 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCATGAAGAGAAGATATTCCCTGAAAGAGT 600 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 539 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCAGGAAGAGAAAATATTCCCCGAAAGAGT 598 Query 601 CCTCGGCAAATTGAACAAAGAATAGTCTTAACCAACTTA 639 |||||||||||| ||||| |||||||||| ||||||||| Sbjct 599 CCTCGGCAAATTAAACAAGGAATAGTCTTGACCAACTTA 637 Score = 222 bits (120), Expect = 3e-57 Identities = 141/151 (93%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 713 TGAAAGTAATTCCAGACCTTGTAGATGAGACTTGAGGAGGATTTTGGTTTTTTGTTGTTT 772 |||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||| Sbjct 662 TGAAAGTAATTCCAGACCTTTTGGATGAGACTTGAGGAGGATTTTGGTTTTTCGA-GTTT 720 Query 773 CCTCAAGGTAAAAATTTTCTTGAGACATAAGAAAACATCTTTGTATGCTGACCTACCCAT 832 |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 721 CCTCGAGGTAAAATTTTTCTTGAGACATAAGAAAACATCTTTGTATGTTGACCTACC-AT 779 Query 833 AAAGCGTATATATTCATGGTTAATTATGGGC 863 ||||||||||||||||||||| ||||||||| Sbjct 780 AAAGCGTATATATTCATGGTTTATTATGGGC 810 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32061373197 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5