BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25120.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480017 jgi|Araly1|480017|fgenesh2_kg.3__2718__AT3G25120.1 996 0.0
> Ahg480017 jgi|Araly1|480017|fgenesh2_kg.3__2718__AT3G25120.1
Length=810
Score = 996 bits (539), Expect = 0.0
Identities = 606/639 (95%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 1 GATTCACAACACCGCATTGAAATTGGAGTTCTCTCGAAGTTCCGTGGCGTCAAAAATGGC 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 GATTCACAACACCGCATTGAAATTGGAG-TCTCTC-AAGTTCCGTGGCGTCAAAAATGGC 58
Query 61 GTTGGGTGATCGGAAATCCCCAGAACAAACAAATCAGGCGTTATCTCCTCCGACGCCTAT 120
|| ||||||||| |||| ||||| | ||| ||||| |||| |||||||| ||||| ||
Sbjct 59 GTCAGGTGATCGGGAATCTCCAGATCGAACGAATCAACCGTTGTCTCCTCCAACGCCGAT 118
Query 121 TGTGCAGGAAAATGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 180
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTGCAAGAAAACGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 178
Query 181 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 238
Query 241 TGTTTACGCTGCTAATTTTGCTATTGTCGCCGGTTGCTATTGCGGAGCTCGTGAATCTGT 300
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 TGTTTACGCTACTAATTGTGCTATTGTCGCTGGTTGCTATTGCGGAGCTCGTGAATCTGT 298
Query 301 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 358
Query 361 TAGTGGTGCTTTGCTTGGAAGACTTCAAGGAGGTCCTAAGGGTGCGATTCGCTACTCTCT 420
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 CAGTGGTGCTTTGCTTGGACGACTTCAAGGAGGTCCTCAGGGTGCGATTCGCTACTCTCT 418
Query 421 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTACCCTTAAAGGAAAACCAATGTT 480
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 419 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTTCCCTTAAAGCAAAACCAATGTT 478
Query 481 AGAGAGCTACCGTAACATGGAGTCATTCAAGTTACCTGAATGGTCTCCTATTAAAGTCCT 540
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 479 AGAGAGCTACCGTAACATGGAGTCGTTCAAATTACCTGAATGGTCTCCTATTAAAATCCT 538
Query 541 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCATGAAGAGAAGATATTCCCTGAAAGAGT 600
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 539 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCAGGAAGAGAAAATATTCCCCGAAAGAGT 598
Query 601 CCTCGGCAAATTGAACAAAGAATAGTCTTAACCAACTTA 639
|||||||||||| ||||| |||||||||| |||||||||
Sbjct 599 CCTCGGCAAATTAAACAAGGAATAGTCTTGACCAACTTA 637
Score = 222 bits (120), Expect = 3e-57
Identities = 141/151 (93%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 713 TGAAAGTAATTCCAGACCTTGTAGATGAGACTTGAGGAGGATTTTGGTTTTTTGTTGTTT 772
|||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||
Sbjct 662 TGAAAGTAATTCCAGACCTTTTGGATGAGACTTGAGGAGGATTTTGGTTTTTCGA-GTTT 720
Query 773 CCTCAAGGTAAAAATTTTCTTGAGACATAAGAAAACATCTTTGTATGCTGACCTACCCAT 832
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 721 CCTCGAGGTAAAATTTTTCTTGAGACATAAGAAAACATCTTTGTATGTTGACCTACC-AT 779
Query 833 AAAGCGTATATATTCATGGTTAATTATGGGC 863
||||||||||||||||||||| |||||||||
Sbjct 780 AAAGCGTATATATTCATGGTTTATTATGGGC 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5