BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25130.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480018 jgi|Araly1|480018|fgenesh2_kg.3__2719__AT3G25130.1 1892 0.0
> Ahg480018 jgi|Araly1|480018|fgenesh2_kg.3__2719__AT3G25130.1
Length=1279
Score = 1892 bits (1024), Expect = 0.0
Identities = 1204/1289 (93%), Gaps = 19/1289 (1%)
Strand=Plus/Plus
Query 17 TTTTTTCTGCAAACATGTCTGAACTTGCATTGTCATCTCAAG-A-AGAGT-CTCCAAGTA 73
||||||||||||||||||||||| |||| ||||||||||||| | ||||| |||||||||
Sbjct 1 TTTTTTCTGCAAACATGTCTGAAGTTGCCTTGTCATCTCAAGAAGAGAGTACTCCAAGTA 60
Query 74 GTAATAAGATTGGTTTATCTTCTCTTCTTCTCTCTGACTTTCATCTCTTTTGCTCATTTA 133
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GGAAGAAGATTGGTTTATCTTCTCTTCTTCTCTCTGATTTTCATCTCTTTTGCTCATTTA 120
Query 134 TCCTCACTCACCctttctatttttcttacttgctcttcttttcaccttacatcttcaaga 193
|| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 TCTTCTCTCACCCTTTCTATTTTTCTTACTTGCTCTTCTTATCACCTTACATCTTCAAGA 180
Query 194 ttctctcttttctttcaccactctttGTCACCACCACACTCTTGCTTCTTGCCTTATTGA 253
|||||||||||||||||||||||||||||||||||||||||||| |||| || ||| | |
Sbjct 181 TTCTCTCTTTTCTTTCACCACTCTTTGTCACCACCACACTCTTGATTCTCGCTTTACTCA 240
Query 254 GTACTTTACATGTTCAAGACACTTGTCTCGACTCTGAATCACTAGAAACACAACCAAGCT 313
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GTACTTTGCATGTTCACGAGACTTGTCTTGACTCTGAATCACTAGAAACACAACCAAGCT 300
Query 314 TCCTTTTCTCCTTTTGTAGTAAGCTTGGAAGTGTCTTGGAACACAAGTTTGATGTC-AAC 372
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 301 TCCTTTTCTCCTTTTGTAGTAAGCTTGGTAGTGTCTTGGAACACAAGTTTGATGTCGAAG 360
Query 373 AATGAGGGTTTTAAGTCATTGGAGGAGTTGGAAGCGTATAAGATGGTCGTCGAGGCTTGC 432
| ||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||
Sbjct 361 A-TGAGGGTTTTAAGTCATTGGAAGACCTGGAAGCGTATAAGATGGTCGTTGAGGCGTGT 419
Query 433 TCGATGGAATGTGCGTCCGAGAATGAGATATGTTCGGATGAATTGACGTTTGTTGACAAA 492
||||| ||| |||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 420 TCGATAGAACGTGCGTCCGATAATGAGATATGTTCCGATGAATTAACGTTTGTTGACAAA 479
Query 493 TTCTGTAGCCATGAGAGCACGGTGTCGGAATCTTTGACCGATGAGACCCTTGAGGAGCAA 552
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 480 TTCTGTAGCCATGAGAGCACGGTGTCGGAAGCTTTGACCGATGAGACCCGTGAGGAGCAA 539
Query 553 GTTGAGATCCAACCGTTGAAGTTTGAGGATGTGATTGTTTTGGagaaagaagaagaaacc 612
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 GTTGAGATCCAACCGTTGAAGTTTGTGGATGTGATTGTTTTGGAGAAAGAAGAAGAAACC 599
Query 613 aagaaatgtgaaaaggaagaagtagaagaacaaaaagtcaagc-ataaaagTGACGTTGT 671
|||||||||||||||||||||| ||| |||||||||||||||| | ||| ||||||||||
Sbjct 600 AAGAAATGTGAAAAGGAAGAAGAAGAGGAACAAAAAGTCAAGCCAGAAA-GTGACGTTGT 658
Query 672 CCTCGATAACAGA-GAAGAGCCGACAAAAGAAGAATCCAAAGCTCAAAAAGTTGACCTTG 730
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCTCGATAAT-GAAGAAGAGCCGACAAAAGAAGAATCCAAAGCTCAAAAAGTTGACCTTG 717
Query 731 TCGGAGATAGTAATAATGAAAGTTATGATCTCCCAAAACTGAGCAATTTTCTCGGAGAAG 790
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TCGGAGATTTTAATAATGAAAGTTATGATCTCCCAAAACTGAGCAAGTTTCTCGGAGAAG 777
Query 791 GAGAAGGTAAAAGAAATGTAGTGACTAAGAACGAAGAAGAAGATAATGTTTCTCTCCAAA 850
| ||||||||||| || ||||| || |||||||||||||| |||||||||||||
Sbjct 778 G------TAAAAGAAATGAAGCAACTAAAAAGGAAGAAGAAGATAACGTTTCTCTCCAAA 831
Query 851 GCTTTGGATCAATGAGAAAAGAGAAAGAATGGAGGAGAACATTGGCTTGCAAGCTATTTG 910
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 832 GCTTTGGATCAATGAGAAAAGAGAAAGAATGGAGGAGAACATTAGCTTGCAAGCTATTCG 891
Query 911 AAGAACGACACAATGCTGACGTTGGACAAGGCATGGATCAGCTGTGGGAGACTTACGAGA 970
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 892 AAGAAAGACACAATGCTGACGTTGGACAAGGCATGGATCAGCTGTGGGAGACATACGAGA 951
Query 971 CACAAACagagaagaagcagcaaaccgaagaagagaagaagaagctcaagaagaagacga 1030
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |
Sbjct 952 CACAAACAGAGAAGAAGCATCAAACTGAAGAAGAGAAGAAGAAGTTCAAGAAGAAGACAA 1011
Query 1031 agtcgatgatgaagacaaagagtatagagaaggaagTTATAGTGGAGGAGGAAGAT---G 1087
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 1012 AGTCGATGATGAAGACTAAGAGTATAGAGAAGGAAGTAATAGTGGAGGAGGAAGATCATG 1071
Query 1088 ATGATGGGATTGATCATCAGCAACTTTGTTGTTTACAAGCTTTGAAGTTCTCAACAGGGA 1147
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1072 ATGATGGGATTGATCATCAACAACTTTGTTGTTTACAGGCTTTGAAGTTCTCAACAGGGA 1131
Query 1148 AGATGCATTTGGGAATTGCGAGGCCTAACCTTTTGAAGCTATCTAAGGCTTTCAAAGGCA 1207
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1132 AGATGCATATGGGAATTGCGAGGCCTAACCTTCTAAAGCTATCTAAGGCTTTCAAAGGCA 1191
Query 1208 TTGGACGTTTTTACAATGCTAACAAACATTCCAAGAAAGCTTGAAAAGGAGATGAATAAT 1267
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1192 TTGGAAGGTTTTACAATGCTAACAAACATTCCAAGAAAGCTTGAAAAGAAGATGAATAAT 1251
Query 1268 AAAACTTTGTATTAATTGGGATCTATAAA 1296
||| ||||||||||||| ||||||||||
Sbjct 1252 AAA-CTTTGTATTAATTTCGATCTATAAA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5