BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25140.1
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497166 jgi|Araly1|497166|fgenesh2_kg.26__1__AT3G25140.1 3007 0.0
Ahg905653 jgi|Araly1|905653|Al_scaffold_0003_2781 399 3e-110
> Ahg497166 jgi|Araly1|497166|fgenesh2_kg.26__1__AT3G25140.1
Length=1852
Score = 3007 bits (1628), Expect = 0.0
Identities = 1785/1860 (96%), Gaps = 14/1860 (1%)
Strand=Plus/Plus
Query 34 CCCAATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCCA-TAATCGGTG 92
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 1 CCCAATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCGATTAA-CGGTG 59
Query 93 GCAGAATCACACTCACAGCTTTCGCTTCCACTATCGCActcttcctcttcactctctcct 152
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCAAAATCAGACTCACAGCTTTCGCTTCCACTATCGCACTCTTCCTCTTCACTCTCTCCT 119
Query 153 tcttcttcgcttcagattctaacgattctcctgatctccttcttccCGGTGTTGAGTACT 212
||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 120 TCTTCTTCGTTTCAGATTCTAACGATTCACCTGATCTTCTTCTTCCCGGTGTAGAGTACT 179
Query 213 CTAATGGAGTCGGATCTAGAAGATCCATGTTGGATATCAAATCGGATCCGCTTAAGCCAC 272
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 CTAATGGAGTCGGATCTAGAAGATCCATGTTGGATATTAAATCGGATCCGCTTAAGCCAC 239
Query 273 GGTTGATTCAGATCCGGAAACAAGCTGATGATCATCGGTCATTAGCATTAGCTTATGCTT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTTGATTCAGATCCGGAAACAAGCTGATGATCATCGGTCATTAGCATTAGCTTATGCTT 299
Query 333 CTTACGCGAGAAAGCTTAAGCTCGAGAATTCGAAACTCGTCAGGATCTTCGCTGATCTTT 392
|||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 300 CTTACGCGAGGAAGCTTAAGTTAGAGAATTCGAAACTCGTTAGGATCTTCGCTGATCTTT 359
Query 393 CGAGGAATTACACGGATCTGATTAACAAACCGACGTATCGAGCTTTGTATGATTCTGATG 452
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CGAGGAATTACACGGATCTGATTAATAAACCGACGTATCGAGCTTTGTATGATTCTGATG 419
Query 453 GAGCCTCGATTGAAGAATCTGTGCTTAGGCAATTTGAGAAAGAAGTTAAGGAACGGATTA 512
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGCTTCGATTGAAGAATCTGTGCTTAGGCAATTTGAGAAAGAAGTTAAGGAACGGATTA 479
Query 513 AAATGACTCGTCAAGTGATTGCTGAAGCTAAAGAGTCTTTTGATAATCAGTTGAAGATTC 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAATGACTCGTCAAGTGATTGCTGAAGCTAAAGAGTCTTTTGATAATCAGTTGAAGATTC 539
Query 573 AGAAGCTGAAAGATACGATTTTCGCTGTTAACGAACAGTTAACTAATGCTAAGAAGCAAG 632
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 AGAAGCTGAAAGATACGATTTTCGCGGTTAACGAACAGTTAACTAATGCTAAGAAGCAAG 599
Query 633 GTGCGTTTTCGAGTTTGATCGCTGCGAAATCGATTCCGAAAGG-ATTGCATTGTCTTGCT 691
||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct 600 GTGCGTTTTCGAGTTTGATTGCTGCGAAATCGATACC-AAAGGGATTGCATTGTCTTGCG 658
Query 692 ATGAGGCTGATGGAAGAGAGGATTGCTCACCCTGAGAAGTATACTGATGAAGGGAAAGAT 751
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGAGGTTGATGGAAGAGAGGATTGCTCACCCTGAGAAGTATACTGATGAAGGGAAAGAT 718
Query 752 AGACCG-CGGGAGCTCGAGGATCCGAATCTTTACCATTACGCTATATTTTCGGATAATGT 810
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGACCGTCGG-AGCTTGAGGATCCGAATCTTTACCATTACGCTATATTTTCGGATAATGT 777
Query 811 GATTGCGGCTTCGGTGGTTGTGAACTCTGCTGTGAAGAATGCTAAGGAGCCGTGGAAGCA 870
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GATTGCGGCGTCAGTGGTTGTGAACTCTGCTGTGAAGAATGCTAAGGAGCCGTGGAAGCA 837
Query 871 TGTTTTTCACGTTGTGACTGATAAGATGAATCTTGGAGCTATGCAGGTTATGTTTAAACT 930
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 TGTCTTTCACGTTGTGACTGATAAGATGAATCTTGGGGCTATGCAGGTTATGTTTAAACT 897
Query 931 GAAGGAGTATAAAGGAGCTCATGTAGAAGTTAAAGCTGTTGAGGATTATACGTTTTTGAA 990
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 GAAGGAGTATAAAGGAGCTCATGTAGAAGTTAAAGCTGTTGAGGACTATACGTTTTTGAA 957
Query 991 CTCTTCGTATGTGCCTGTGTTGAAGCAGTTAGAATCTGCGAATCTTCAGAAGTTTTATTT 1050
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 958 CTCTTCGTATGTGCCTGTGTTGAAGCAATTGGAATCTGCGAATCTTCAGAAGTTCTATTT 1017
Query 1051 CGAGAATAAGCTCGAGAATGCGACGAAAG-ATACCACGAATATGAAGTTCAGGAACCCCA 1109
||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 1018 CGAGAATAAGCTCGAGAATGCAAC-AAAGGATACCACGAATATGAAGTTCAGGAACCCCA 1076
Query 1110 AGTATTTATCTATATTGAATCACTTGAGGTTTTATTTACCCGAGATGTACCCGAAACTAC 1169
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGTATTTGTCTATATTGAATCACTTGAGGTTTTATTTACCCGAGATGTACCCGAAACTAC 1136
Query 1170 ATAGGATACTGTTTTTGGACGATGATGTGGTTGTGCAGAAGGATTTAACGGGTCTGTGGG 1229
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1137 ATAGGATACTGTTTTTGGACGATGATGTGGTTGTGCAGAAGGATTTAACGGGGCTGTGGG 1196
Query 1230 AGATTGATATGGATGGGAAAGTGAATGGAGCTGTAGAGACTTGTTTTGGGTCGTTTCATC 1289
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1197 AGATCGATATGGATGGGAAAGTGAATGGAGCTGTAGAGACTTGTTTTGGGTCGTTCCATC 1256
Query 1290 GGTACGCTCAATACATGAATTTCTCACATCCTTTGATCAAAGAGAAGTTTAATCCCAAAG 1349
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1257 GGTATGCTCAATACATGAATTTCTCACATCCTTTGATTAAAGAGAAGTTTAATCCCAAAG 1316
Query 1350 CATGTGCGTGGGCGTATGGAATGAACTTCTTTGATCTTGATGCTTGGAGAAGAGAGAAGT 1409
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CATGCGCGTGGGCTTATGGAATGAACTTCTTTGATCTTGATGCTTGGAGAAGAGAGAAGT 1376
Query 1410 GCACAGAAGAATATCACTACTGGCAAAATCTGAACGAGAACAGGGCTCTATGGAAACTGG 1469
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1377 GCACAGAAGAATATCACTACTGGCAAAATCTGAACGAGAACAGGGCTCTTTGGAAACTGG 1436
Query 1470 GGACGTTACCACCGGGACTGATCACCTTTTACTCAACCACAAAGCCGCTGGACAAATCAT 1529
| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1437 GAACATTACCACCGGGACTGATCACGTTTTACTCGACCACAAAGCCGCTGGACAAATCAT 1496
Query 1530 GGCATGTGCTTGGGCTGGGTTACAATCCGAGCATTAGCATGGATGAGATCCGCAACGCTG 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GGCATGTGCTTGGGCTGGGTTACAATCCGAGCATTAGCATGGATGAGATCCGCAACGCTG 1556
Query 1590 CAGTGGTACACTTCAACGGTAACATGAAGCCATGGCTTGACATAGCTATGAACCAGTTTC 1649
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1557 CAGTGGTACACTTCAACGGTAACATGAAGCCGTGGCTGGACATAGCTATGAACCAGTTTC 1616
Query 1650 GACCACTTTGGACCAAACACGTCGACTATGACCTCGAGTTTGTTCAGGCTTGCAATTTTG 1709
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1617 GACCACTTTGGACCAAACACGTCGACTATGACCTTGAGTTTGTTCAGGCTTGCAATTTCG 1676
Query 1710 GCCTCTGAACTATGAAAATTTT-CTTTATCATCAAAATCTGAAAGCATATGTTGTTTGTT 1768
| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1677 GTCTCTGAACTCTGAAATTTTTTCTTTATCATCAAAATCTGAAAGCATATGTTGTT---- 1732
Query 1769 ACTTCAGCTCTACGAAgttttaaccttagtttttgtttgtgtttatttatatatttttgg 1828
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1733 ACTTCAGTTCTACGAAGTTTTAACCTTAGTTTTTGTTTGTGCTTATTTATATATTTTTGG 1792
Query 1829 gggtttagtagaacact-tgtattttgttCATAGCTATCTTTGTTCTATGGCAACCTATA 1887
|||||||| | | | | |||||||||||||||||| || | |||||||||||||||||
Sbjct 1793 GGGTTTAGAATCATAATCTGTATTTTGTTCATAGCTGTCGTAATTCTATGGCAACCTATA 1852
> Ahg905653 jgi|Araly1|905653|Al_scaffold_0003_2781
Length=267
Score = 399 bits (216), Expect = 3e-110
Identities = 239/250 (96%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 38 ATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCCA-TAATCGGTGGCAG 96
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||
Sbjct 1 ATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCGATTAA-CGGTGTCAA 59
Query 97 AATCACACTCACAGCTTTCGCTTCCACTATCGCActcttcctcttcactctctccttctt 156
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AATCAGACTCACAGCTTTCGCTTCCACTATCGCACTCTTCCTCTTCACTCTCTCCTTCTT 119
Query 157 cttcgcttcagattctaacgattctcctgatctccttcttccCGGTGTTGAGTACTCTAA 216
||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 120 CTTCGTTTCAGATTCTAACGATTCACCTGATCTTCTTCTTCCCGGTGTAGAGTACTCTAA 179
Query 217 TGGAGTCGGATCTAGAAGATCCATGTTGGATATCAAATCGGATCCGCTTAAGCCACGGTT 276
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TGGAGTCGGATCTAGAAGATCCATGTTGGATATTAAATCGGATCCGCTTAAGCCACGGTT 239
Query 277 GATTCAGATC 286
||||||||||
Sbjct 240 GATTCAGATC 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72142924030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5