BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25150.2
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951951 jgi|Araly1|951951|scaffold_2600002.1 2259 0.0
> Ahg951951 jgi|Araly1|951951|scaffold_2600002.1
Length=1504
Score = 2259 bits (1223), Expect = 0.0
Identities = 1403/1491 (94%), Gaps = 8/1491 (1%)
Strand=Plus/Plus
Query 343 GCTATGGCGATGTTAGGTGCACAGCAAGTTCCAGCAGCAGCTTGTACTCCAGATATGGTT 402
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 21 GCTATGGCGATGTTAGGTGCACAGCAAGTTCCAACAGCAGCTTGTACTCCAGATATGGTT 80
Query 403 GGGAATGCTTTTGTGCCCCAGTATTATCACATATTGCATCAATCACCTGAGCATGTTCAC 462
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 81 GGGAATGCTTTTGTGCCTCAGTATTATCACATATTGCATCAATCTCCTGAGCATGTTCAT 140
Query 463 AGATTTTACCAAGAGATTAGCAAGTTAGGTCGTCCTGAAGAGAATGGTTTAATGAGCATC 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AGATTTTACCAAGAGATTAGCAAGTTAGGTCGTCCTGAAGAGAATGGTTTAATGAGCATT 200
Query 523 ACTTCTACCTTGCAAGCTATTGACAAGAAGATAATGGCGCTTGGTTACGGTGTAATCAGT 582
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 201 ACTTCTACCTTGCAAGCTATTGACAAGAAGATAATGGAGCTAGGTTACGGTGTAGTCAGT 260
Query 583 GCAGAGATAGCTACTGTGGACACACAAGAATCTCATGGAGGTGGT-TATATTGTACTGGT 641
|| ||||| || ||||||||| | ||||||||| |||| |||||| | | ||||||||||
Sbjct 261 GCGGAGATTGCAACTGTGGACTCCCAAGAATCTTATGGTGGTGGTGT-TCTTGTACTGGT 319
Query 642 GACTGGGTATTTGACGGGAAAAGACAGTGTCAGGAGGACGTTTAGTCAGACCTTCTTCCT 701
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 320 GACTGGGTATTTGACGGGGAAAGACAGTGTCAGGAGGATGTTTAGTCAGACCTTCTTCCT 379
Query 702 TGCTCCACAGGAGACAGGATACTTTGTCTTGAATGATATGTTTCGATTCATTGATGAAGG 761
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 380 TGCTCCACAGGAGACAGGATACTTTGTCTTGAATGATATGTTCCGATACAGTGATGAAGC 439
Query 762 CACTGTCGTACATGGAAATCAGATTCCAGTGAACAACGTCCAAGCTCCTGTCAACACTTA 821
| | ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 440 CGCAATCGTACATGGAAATCAGATTCTAGTGAACAACATCCAAGTTCCTGTCAACACTTA 499
Query 822 CCAGGACACAGCTGCTGCGAAGGAAATTCCAGATGACTTTGTTCAGGAGAAATATGTCCA 881
|||||| ||||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 500 CCAGGATACAGCTGCTTCAAAAGACATTCCAGATGACTTTGTTCAGGAGAAATATGTCCA 559
Query 882 AGAGAATCATGCTGTTAAGCAAACCGAGGTGTTGTCCAAGAGCATTAATGAGCCTGAAAA 941
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 560 AGAGAATCATGCTGTTAAGCAAACCGAGGTGTTGTCCAAGAGCATTAATGGGCCTG---A 616
Query 942 AGTGTTCACGCCCTCTGAAGATGAACAAGTATCAGCTGCAGAAGAAGCTCTGGTGACTGA 1001
|||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| | ||||
Sbjct 617 AGTGTTCATTCCCTCCGAAGATGAACAAGTATCAGCTACAGAAGAAGTTCTGGCGCCTGA 676
Query 1002 AACAGTTAATGAAGCACCAATTGAAGTGCAAAAGGTTGGAGAATCTGATTCTAGGACTGG 1061
|| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 677 AATAGTTAATGAAGCACCAATCGAAGCGCAGAAGGTTGGAGAATCTGATTCTAGGACTGG 736
Query 1062 CGAAATTCCAAAGAGATCTTATGCATCAATTGTGAAGGTTATGAAAGAAAATGCTGCACC 1121
|||| |||||||||||||||||||||| |||||||| | |||||||| |||||||||||
Sbjct 737 CGAAGTTCCAAAGAGATCTTATGCATCCATTGTGAA-G--ATGAAAGAGAATGCTGCACC 793
Query 1122 AATGTCTGCTTCGAGAACTCCAACAAAGGTGGAACCAAAGAAACAAGAAGATCAAGCCAT 1181
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 794 GATGTCTGCTTCGAAAACTCCAACAAAGGTGGAACCAAAGAAACAAGAAGAGCAAGCCAT 853
Query 1182 TCATATCCCTCTACCAACACCATTGTCTGAGAAATCAGATTCAGGAGCAAATGTTGCTGT 1241
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 854 TCATATCCCTCTACCAACACCATTGTCTGAGAAATCAGATTCAGGAGCAAATATAGCGGT 913
Query 1242 AAATGAGAACAATCAAGAGAATGAAAGAGCTCTAGGTCCATCCATCTATCTAAAGGGTTT 1301
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 914 AAATGAGAACAATCACGATAATGAAAGAGCTCTAGGTCCATCCATCTATCTAAAGGGCTT 973
Query 1302 ACCCCTTGATGCAACACCTGCCTTGCTTGAGAATGAGTTCCAGAAATTTGGACTTATTAG 1361
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ACCCCTTGATACAACACCAGCCTTGCTTGAGAATGAGTTCCAGAAATTTGGACTTATTAG 1033
Query 1362 GACCAATGGAATTCAAGTGAGAAGCCAGAAGGGATTCTGTTTTGGTTTTGTTGAGTTTGA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GACCAATGGAATTCAAGTGAGAAGCCAGAAGGGATTCTGTTTTGGTTTTGTTGAGTTTGA 1093
Query 1422 ATCCGCAAGTTCCATGCAAAGCGCTATCGAGGCATCACCTGTCATGCTCAATGGACACAA 1481
||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1094 ATCTGCAAGTTCCATGCAAAGCGCTATCGAGGCATCACCTGTCTTGCTCAATGGGCACAA 1153
Query 1482 AGTTGTTGTGGAGGAAAAGCGATCTACCGCAAGAGGGAACTATAGAGGACGTTCGACGTT 1541
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1154 AGTAGTTGTGGAGGAAAAGCGATCTACCGCAAGAGGGAACTATAGAGGACGTTCGACATT 1213
Query 1542 TGGTGTAAACACAGGCTACAGAAACGAAGGAGGAAGGGGTCGTGGGAGCTTTGGAGGTGG 1601
|||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 1214 TGGTGTGAACTCAGGCTACAGAAACGAAGGTGGAAGGGGTCGTGGGAGCTATGGTGGTGG 1273
Query 1602 AAGAGGAGGATATGGCCGGACCGATTTCAACGGATATGGTAATAACAGGGGAAACAATAG 1661
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1274 AAGAGGAGGATATGGCCGGACAGACTTCAACGGATATGGTAATAACAGGGGAAACAATAG 1333
Query 1662 AGGCGGATACGCAAACCGAGCAAATGGTGATGGTGGTGGGTTCCCGAGGGCCAATGGTAA 1721
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1334 AGGAGGATACGCAAACCGAGCAAATGGTGACGGTGGTGGGTTCCCGAGGGCCAATGGTAA 1393
Query 1722 CAATGGACGAGTAAGACGTGGTGGCGGAAATGATGCTAACAGAGCTACGAAACCCGTGGA 1781
|| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1394 TAACGGACGTGTAAGACGTGGTGGCGGAATTGATGCTAACAGAGCTACTAAACCCGTGGA 1453
Query 1782 TGATGCTCCCCGTGTGTCTGTTGCTGCGTAAATGTGCTTTTGAAACAAAAA 1832
|||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1454 TGATGCTCCCCGTGTGTCTGTTACTGCGTAAATGTGCTTTTGAACCAAAAA 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5