BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25160.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930626 jgi|Araly1|930626|scaffold_303083.1 1382 0.0
> Ahg930626 jgi|Araly1|930626|scaffold_303083.1
Length=860
Score = 1382 bits (748), Expect = 0.0
Identities = 827/865 (96%), Gaps = 6/865 (1%)
Strand=Plus/Plus
Query 24 gagaTTTGTAATAATCAAATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACGTTGTT 83
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 GAGATTTGTAATAATCATATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACATGGTT 60
Query 84 TTCGGGTGGCTGCGACAACAATCGAACAAGGTTAAAATAGCTTTAGGAATTATCATCTCT 143
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTCGGGTGGCTAAGACAACAATCGAACAAGGTTAAGATAGCTTTAGGAATTATCATCTCT 120
Query 144 TTGATCCTCGTCGT-TCTTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 202
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGATCCTCGTCGTGT-TTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 179
Query 203 CTCCGAGCTCATCCACGCCGCCGGAATCTTGATCCTCATCTACAAACTCACTCGCCAAAA 262
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CTCCGAGCTCATCCACGCCACCGGAATCTTGATCCTTATCTACAAACTCACTCGCCAAAA 239
Query 263 GACTTGCTCCGGTCTTTCTTTAAAATCTCAAGAAGTGACAGCAATATTTCTAGCGGTGAG 322
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 240 GACTTGCTCCGGTCTTTCTCTAAAGTCTCAAGAAGTGACAGCAATATTTCTAGCTGTGAG 299
Query 323 ATTGATATGCAGCATAAACATGGAAGGTGATATCCATACAGTTCTCGATTTCGCCACCTT 382
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 ATTGATATGCAGCATAAACATGGAAGGGGATATCCATACAGTTCTCGATTTCGCCACCTT 359
Query 383 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 419
Query 443 GTCTCTCGACACTTGCTACAATTACTATGTGCTTGTACCATCTGCTATCCTTGCGTTGAT 502
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 420 GTCTCTAGACACTTGCTACAATTACTATGTGCTTGTACCATCAGCTATCCTTGCGTTGGT 479
Query 503 TATTAACCCGAGTACGAGTTATTCTTACTTCCACCGTATATTGTGGGCGTTTTGCGTCTA 562
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 480 TATCAACCCGAGTACGAGTTATTCTTACTTCCACCGTATCTTGTGGGCGTTTTGCGTTTA 539
Query 563 CACAGAATCTGTCTCTGTTCTACCTCAACTTCGATTAATGCAAAATGCTCAGATCATAGA 622
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 540 CACAGAATCTGTCTCTGTTCTACCTCAGCTTCGATTGATGCAAAATGCTCAGATCATAGA 599
Query 623 GCCTTTCACAGCTCATTATGTGTTTGCACTCGGAATAGCTAGATTCCTGGCATGCGCTCA 682
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 600 GCCTTTCACAGCTCATTACGTGTTTGCGCTCGGAATAGCTAGATTCTTGGCATGCGCTCA 659
Query 683 TTGGATTATCCAGGTCGTTGAGACTCGTGGACATTACCTATGGCTACTCGGGGCTGGTTA 742
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 660 CTGGATTATCCAGGTCGTTGAAACTCGTGGACATTACCTATGGCTGCTCGGGGCTGGTTA 719
Query 743 CTTCTGGTTTCCGGTGGCTCTACTAGCCGAGATCGTTCAAACTTTCATCCTCGCCGACTT 802
||| ||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 720 CTTTTGGTTCCCGGTTGCTCTAATAGCCGAGATCGTTCAAACCTTCATCCTCGCCGACTT 779
Query 803 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 839
Query 863 AGATCATCTAGTATAAAATGAACCA 887
| || | ||||||||||||||||
Sbjct 840 A-ATTA---AGTATAAAATGAACCA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5