BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25160.1 Length=1032 Score E Sequences producing significant alignments: (Bits) Value Ahg930626 jgi|Araly1|930626|scaffold_303083.1 1382 0.0 > Ahg930626 jgi|Araly1|930626|scaffold_303083.1 Length=860 Score = 1382 bits (748), Expect = 0.0 Identities = 827/865 (96%), Gaps = 6/865 (1%) Strand=Plus/Plus Query 24 gagaTTTGTAATAATCAAATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACGTTGTT 83 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 GAGATTTGTAATAATCATATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACATGGTT 60 Query 84 TTCGGGTGGCTGCGACAACAATCGAACAAGGTTAAAATAGCTTTAGGAATTATCATCTCT 143 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 TTCGGGTGGCTAAGACAACAATCGAACAAGGTTAAGATAGCTTTAGGAATTATCATCTCT 120 Query 144 TTGATCCTCGTCGT-TCTTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 202 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGATCCTCGTCGTGT-TTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 179 Query 203 CTCCGAGCTCATCCACGCCGCCGGAATCTTGATCCTCATCTACAAACTCACTCGCCAAAA 262 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 180 CTCCGAGCTCATCCACGCCACCGGAATCTTGATCCTTATCTACAAACTCACTCGCCAAAA 239 Query 263 GACTTGCTCCGGTCTTTCTTTAAAATCTCAAGAAGTGACAGCAATATTTCTAGCGGTGAG 322 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| Sbjct 240 GACTTGCTCCGGTCTTTCTCTAAAGTCTCAAGAAGTGACAGCAATATTTCTAGCTGTGAG 299 Query 323 ATTGATATGCAGCATAAACATGGAAGGTGATATCCATACAGTTCTCGATTTCGCCACCTT 382 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 ATTGATATGCAGCATAAACATGGAAGGGGATATCCATACAGTTCTCGATTTCGCCACCTT 359 Query 383 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 419 Query 443 GTCTCTCGACACTTGCTACAATTACTATGTGCTTGTACCATCTGCTATCCTTGCGTTGAT 502 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 420 GTCTCTAGACACTTGCTACAATTACTATGTGCTTGTACCATCAGCTATCCTTGCGTTGGT 479 Query 503 TATTAACCCGAGTACGAGTTATTCTTACTTCCACCGTATATTGTGGGCGTTTTGCGTCTA 562 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 480 TATCAACCCGAGTACGAGTTATTCTTACTTCCACCGTATCTTGTGGGCGTTTTGCGTTTA 539 Query 563 CACAGAATCTGTCTCTGTTCTACCTCAACTTCGATTAATGCAAAATGCTCAGATCATAGA 622 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 540 CACAGAATCTGTCTCTGTTCTACCTCAGCTTCGATTGATGCAAAATGCTCAGATCATAGA 599 Query 623 GCCTTTCACAGCTCATTATGTGTTTGCACTCGGAATAGCTAGATTCCTGGCATGCGCTCA 682 |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| Sbjct 600 GCCTTTCACAGCTCATTACGTGTTTGCGCTCGGAATAGCTAGATTCTTGGCATGCGCTCA 659 Query 683 TTGGATTATCCAGGTCGTTGAGACTCGTGGACATTACCTATGGCTACTCGGGGCTGGTTA 742 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 660 CTGGATTATCCAGGTCGTTGAAACTCGTGGACATTACCTATGGCTGCTCGGGGCTGGTTA 719 Query 743 CTTCTGGTTTCCGGTGGCTCTACTAGCCGAGATCGTTCAAACTTTCATCCTCGCCGACTT 802 ||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 720 CTTTTGGTTCCCGGTTGCTCTAATAGCCGAGATCGTTCAAACCTTCATCCTCGCCGACTT 779 Query 803 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 839 Query 863 AGATCATCTAGTATAAAATGAACCA 887 | || | |||||||||||||||| Sbjct 840 A-ATTA---AGTATAAAATGAACCA 860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38389777419 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5