BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25165.1
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930627 jgi|Araly1|930627|scaffold_303084.1 254 6e-67
> Ahg930627 jgi|Araly1|930627|scaffold_303084.1
Length=272
Score = 254 bits (137), Expect = 6e-67
Identities = 233/276 (84%), Gaps = 19/276 (7%)
Strand=Plus/Plus
Query 49 aaacaaaaagaagaaaaaaaTGAAGACATTTATGATAATCTTGTTGGTGATTTGTAGCAT 108
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAA-AAAAAAAAAAAAAAAATGAAGACATTTATGATAATCTTGTTGGTGATTTGTAGCAT 62
Query 109 CTTGATTGTAGGACGAGTTGAGGCTAACGATAACAAGAGAAAATATCTA---C----TA- 160
||||||| |||||||||||| |||||| || |||||| |||||| || | ||
Sbjct 63 ATTGATTGCAGGACGAGTTGAAGCTAACAATCCCAAGAGGAAATATTTAAATCCGGGTAT 122
Query 161 -CTCGATCCATGCTTGCGTCCTAATGCTCCACCA-GGATGTCATCGTCAGCCA-TATAAA 217
||| |||||||||||||||||||||||| | | |||||||| |||| | | |||| |
Sbjct 123 TCTCAATCCATGCTTGCGTCCTAATGCTC-ATAAAGGATGTCAGCGTCCTC-AGTATAGA 180
Query 218 CCCCGTACTCCGGTTAACGT-ATATAGTCGTGGTTGCACCACAATCAACCGATGCCGCCG 276
|| ||||||||||| ||| | |||||||||||| ||| ||||||||||||||||||||||
Sbjct 181 CCACGTACTCCGGTAAAC-TCATATAGTCGTGGCTGCTCCACAATCAACCGATGCCGCCG 239
Query 277 AGTGCAGAATCCGTGAGATCTAATGACATATTTTAT 312
| |||| ||| |||||||||||| ||||||||||
Sbjct 240 A---CAGACTCCATGAGATCTAATGGCATATTTTAT 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20222462170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5