BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25170.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930628 jgi|Araly1|930628|scaffold_303085.1 422 2e-117
> Ahg930628 jgi|Araly1|930628|scaffold_303085.1
Length=273
Score = 422 bits (228), Expect = 2e-117
Identities = 258/273 (95%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 27 TCAACATATTAATTGACTAAAAATGAAGGCATGGATGATAATCTTGTTGGTGATTTGTGT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAACATATTAATTGACTAAAAATGAAGGCATGGATGATAATCTTGTTGGTGATTTGTGT 60
Query 87 CGCTGTGGTGGTGGAGCAATCAGAGGCTCGCAAAGGTCGAAAGTATTTAAATCCAGGCGT 146
||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 61 CGCTGTGATGGTGGAGCAATCAGAGGCTCGCAAAGCCCGAAAGTATTTACATCCAGGCGT 120
Query 147 GCTTGACCGGTGTCGTGGTCCTAATCCTCCAGCGGGATGTCATCCTCACAATTCCCACCA 206
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTGACCGGTGCCGTGGTCCTACTCCTCCAGCGGGATGTCATCCTCACAATTCCCACCA 180
Query 207 CAAACCTCGCGTCCCTGTTCACAATTATAGTCGTGGTTGTAGTAGAATTACCCGGTGCAG 266
||||| || |||||||||||||| |||||||||||||| || |||||| |||||||||
Sbjct 181 AAAACCCCGTGTCCCTGTTCACAAATATAGTCGTGGTTGCGGTGGAATTAACCGGTGCAG 240
Query 267 ACGAGATGCCTAGGTTTAACCTCACATGACGAC 299
||||||||| |||||||||||||||||||||||
Sbjct 241 ACGAGATGCGTAGGTTTAACCTCACATGACGAC 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5