BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25182.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791 1352 0.0
Ahg930567 jgi|Araly1|930567|scaffold_303024.1 1288 0.0
Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1 935 0.0
Ahg497170 jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1 671 0.0
Ahg930645 jgi|Araly1|930645|scaffold_303102.1 603 1e-171
Ahg930646 jgi|Araly1|930646|scaffold_303103.1 268 4e-71
Ahg311675 jgi|Araly1|311675|fgenesh1_pm.C_scaffold_1000455 113 2e-24
> Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791
Length=1038
Score = 1352 bits (732), Expect = 0.0
Identities = 949/1049 (90%), Gaps = 34/1049 (3%)
Strand=Plus/Plus
Query 1 ATGACTAGTATGTATTACAATCACGATCATCTCACTGCTTCAGGGAAGAACATGTGGTCG 60
|||| || ||||||| || || ||||||||||||| ||||||||||||||| ||||||||
Sbjct 1 ATGAATATTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGAACCTGTGGTCG 60
Query 61 AATTTCTATGTACTGGTTGATACGGCGGTGATGTTATATgaagaagaaaaacaacgtc-g 119
||||||| ||||||||||||| ||||||| ||||||||| |||||| ||||||| | |
Sbjct 61 AATTTCTTTGTACTGGTTGATGCGGCGGTAATGTTATAT---GAAGAACAACAACG-CAG 116
Query 120 taagattgtctctgaagaagaagaagaaacacagaagagaaTCTTTTGTCTCTTCCCGAG 179
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 TAAGATTGTCTCCGAAGAAGAAGAAGAGACACAGAAGAGAATCTTTTGTCTCTTCCCGAG 176
Query 180 AAAAACAAGATCGTCTTTGGTAAAGAGACAACAAAAGC------------T---TTC-AG 223
||||||||||||||||||||| |||||||||||||||| | ||| |
Sbjct 177 AAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGGTTTTTAACTTCTA- 235
Query 224 CTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTTCTGATTCTGAGATCGAAGACCCAC 283
||||||||||| ||||||||||||||||||||||| |||||||||||| | ||| ||
Sbjct 236 CTTCTTCATCGTTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-C--AGA---AC 289
Query 284 TAAACCATCATCAGTTGCTATCTTCTTCATGTTTCATCGCCGCTGATTTCGAGAC----A 339
|||||||| || ||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 290 AAAACCATCTTCGGTTGCTATCTTCTTCATGTTTCATCCCCGCTGATTCCGAGACGAAAA 349
Query 340 --CTACAAAACCCTAGTTCCGAACCTTGTTCTTCACTCGTACTCTTTGATTGCAAGACGG 397
||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 350 CCCTACAAAACCCTAGTTCTGAACCTTGTTCTTCACTCGTAGTCTTTGATTACAAGATGG 409
Query 398 CTGGGTCCGAGAAGACAGAGACGAAAGACCCACCAAACCCTAATTTCCCATGTCCTCTGT 457
||| ||||||| ||| ||||||||||||||| |||||||||||| | |||| || |||
Sbjct 410 CTGAGTCCGAGGAGAGGGAGACGAAAGACCCAGTAAACCCTAATTTTCAATGTTCTTTGT 469
Query 458 CTTTGTGCCTAACGGAGAACAAAAACCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGTA 517
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 470 CTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGTA 529
Query 518 CTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGACGCCTG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 530 CTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGGCGCCTG 589
Query 578 AGTGGCTTGTCAATGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAATTGATCTTTG 637
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 590 AGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAACTGATCTTTG 649
Query 638 AGAAGACTCTGTTCGTTACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCA 697
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 650 AGAAGACTCTGTTCGTGACTGATGTGAACCCAACACAGAACCGTCTCTCAATGCCTTTCA 709
Query 698 ACAACTTACTCCGCAACGATTTCTTGACTTCTGTGGAGTCAAGAATCATAGACAAAGACA 757
|||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 710 ACAACTTAATCCGGAACGATTTCTTGACCTCTGTGGAGTCCAGAATCATAGACAAAGACA 769
Query 758 TCAAAAACGATAAGAAGATTGGAGTGGGAGCGATTCTTGTGGATCAACGGTGTAAGAAGT 817
|||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 770 TCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGAGAAGT 829
Query 818 GGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATT 877
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 830 GGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGAAAAGGAAGCTGGAATT 889
Query 878 ACAATCTAATCTGTGGGTGGAACGATATTGTTGAGGCTAATGGATTGAAAGAAGGCGACA 937
||||| | || ||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 890 ACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGCCGGCGACA 949
Query 938 ACATTAGTCTTTGGTCATTCAGGTCCTGTGGAATCCTCTGCTTTGCCATGGAACAGAGAA 997
|||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||| |
Sbjct 950 ACATTAGTCTTTGGTCGTTTAGGTGCTGTGGAGTCCTCTGCTTTGCCATGGAACAGAGTA 1009
Query 998 GCCCTTCCCTTGCTCTCTGTCTCTGCTAA 1026
|| |||| |||||||||||||||||||||
Sbjct 1010 GCTCTTCTCTTGCTCTCTGTCTCTGCTAA 1038
> Ahg930567 jgi|Araly1|930567|scaffold_303024.1
Length=1079
Score = 1288 bits (697), Expect = 0.0
Identities = 938/1049 (89%), Gaps = 37/1049 (4%)
Strand=Plus/Plus
Query 1 ATGACTAGTATGTATTACAA-TCACGATCATCTCACTGCTTCAGGGAAGAACATGTGGTC 59
||||||||| ||||| |||| || ||||||||||| |||||||||||| || ||||||
Sbjct 21 ATGACTAGTCTGTATCACAATTC-TGATCATCTCACGGCTTCAGGGAAGGACCTGTGGTT 79
Query 60 GAATTTCTATGTACTGGTTGATACGGCGGTGATGTTATATgaagaagaaaaacaacgtcg 119
|||||||| ||||||||||||| |||| || |||||||||||||||| ||||||||||
Sbjct 80 GAATTTCTGTGTACTGGTTGATGCGGCAGTTATGTTATATGAAGAAG---AACAACGTCG 136
Query 120 taagattgtctctgaagaagaagaagaaacacagaagagaaTCTTTTGTCTCTTCCCGAG 179
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 137 TAAGATTGTCTCCGAAGAAGAAGAAGAGGCACAGCAGAGAATCTTTTGTCTCTTCCCGAG 196
Query 180 AAAAACAAGATCGTCTTTGGTAAAGAGACAACAAAAGC---------TTTC-A-----GC 224
||||||||||||||||||||| |||||||||||||||| |||| | |
Sbjct 197 AAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGGGTTTCTACTTCTAC 256
Query 225 TTCTTCATCGCTTATCGATCTTAACCAGTTCCCTTCTGATTCTGAGATCGAAGACCCACT 284
|||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||
Sbjct 257 TTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-C--AGA---ACA 310
Query 285 AAACCATCATCAGTTGCTATCTTCTTCATGTTTCATCGCCGCTGATTTC--GA-G---AC 338
|||||||| ||||||||||||||||||||||||||| |||||||| | || | ||
Sbjct 311 AAACCATCTTCAGTTGCTATCTTCTTCATGTTTCAT---CGCTGATTCCGAGATGAAAAC 367
Query 339 ACTACAAAACCCTAGTTCCGAACCTTGTTCTTCACTCGTACTCTTTGATTGCAAGACGGC 398
||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 368 CCTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGACGGC 427
Query 399 TGGGTCCGAGAAGACAGAGACGAAAGACCCACCAAACCCTAATTTCCCATGTCCTCTGTC 458
|| |||||||||||| |||||||||||||||| ||||| ||||||||||||| || ||||
Sbjct 428 TGAGTCCGAGAAGACGGAGACGAAAGACCCACTAAACCGTAATTTCCCATGTTCTATGTC 487
Query 459 TTTGTGCCTAACGGAGAACAAAAACCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGTAC 518
|||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |
Sbjct 488 TTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGAAACGTTC 547
Query 519 TGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGACGCCTGA 578
|||||||||||||||||||||||||||| || |||| |||||| |||||| |||||
Sbjct 548 TGGTGGAGTCAAGAAAGCAAAGGTTGCTTGTTCTTCAGGGACGGCGCCAGAGACACCTGA 607
Query 579 GTGGCTTGTCAATGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAATTGATCTTTGA 638
|||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 608 GTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTTGA 667
Query 639 GAAGACTCTGTTCGTTACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAA 698
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GAAGACACTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAA 727
Query 699 CAACTTACTCCGCAACGATTTCTTGACTTCTGTGGAGTCAAGAATCATAGACAAAGACAT 758
||||||||||||||||||||| ||||| | || ||||| ||||||||| || |||||||
Sbjct 728 CAACTTACTCCGCAACGATTTTTTGACACCAGTAGAGTCCAGAATCATAAACGAAGACAT 787
Query 759 CAAAAACGATAAGAAGATTGGAGTGGGAGCGATTCTTGTGGATCAACGGTGT-AAGAAGT 817
||| ||| |||||||||||||||||||||||||||| || |||||||||||| || ||||
Sbjct 788 CAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTTGATCAACGGTGTGAA-AAGT 846
Query 818 GGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATT 877
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATT 906
Query 878 ACAATCTAATCTGTGGGTGGAACGATATTGTTGAGGCTAATGGATTGAAAGAAGGCGACA 937
||||| | || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 907 ACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAATGGATTGAAAGAGGGCGACA 966
Query 938 ACATTAGTCTTTGGTCATTCAGGTCCTGTGGAATCCTCTGCTTTGCCATGGAACAGAGAA 997
|||||||||||||||| || |||| ||||| |||||| |||||||||||||||||||| |
Sbjct 967 ACATTAGTCTTTGGTCGTTTAGGTGCTGTGAAATCCTTTGCTTTGCCATGGAACAGAGTA 1026
Query 998 GCCCTTCCCTTGCTCTCTGTCTCTGCTAA 1026
|| ||||||||||||||||||||||||||
Sbjct 1027 GCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1055
> Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1
Length=817
Score = 935 bits (506), Expect = 0.0
Identities = 630/688 (92%), Gaps = 15/688 (2%)
Strand=Plus/Plus
Query 337 ACACTACAAAACCCTAGTTCCGAACCTTGTTCTTCACTCGTACTCTTTGATTGCAAGACG 396
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
Sbjct 145 ACACTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGATG 204
Query 397 GCTGGGTCCGAGAAGACAGAGACGAAAGACCCACCAAACCCTAATTTCCCATGTCCTCTG 456
|||| |||||||||||||||||||||||| | || | |||| | ||||||
Sbjct 205 GCTGAGTCCGAGAAGACAGAGACGAAAGA--C-CC--A--CTAA------A--CCCTCTG 249
Query 457 TCTTTGTGCCTAACGGAGAACAAAAACCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGT 516
|||||| ||||| ||||||||| || ||||||||||||||| || || |||||||||||
Sbjct 250 TCTTTGGGCCTATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAGAGAGGAAGCGT 309
Query 517 ACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGACGCCT 576
||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 310 ACTGGTGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGAGAGAGACGCCT 369
Query 577 GAGTGGCTTGTCAATGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAATTGATCTTT 636
|||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 370 GAGTGGCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTT 429
Query 637 GAGAAGACTCTGTTCGTTACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTC 696
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTC 489
Query 697 AACAACTTACTCCGCAACGATTTCTTGACTTCTGTGGAGTCAAGAATCATAGACAAAGAC 756
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 490 AACAACTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGAC 549
Query 757 ATCAAAAACGATAAGAAGATTGGAGTGGGAGCGATTCTTGTGGATCAACGGTGTAAGAAG 816
||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 550 ATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGAGAAG 609
Query 817 TGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAAT 876
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAAT 669
Query 877 TACAATCTAATCTGTGGGTGGAACGATATTGTTGAGGCTAATGGATTGAAAGAAGGCGAC 936
|||||| | || ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 670 TACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGATGGCGAC 729
Query 937 AACATTAGTCTTTGGTCATTCAGGTCCTGTGGAATCCTCTGCTTTGCCATGGAACAGAGA 996
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 730 AACATTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCATGGAACAGAGT 789
Query 997 AGCCCTTCCCTTGCTCTCTGTCTCTGCT 1024
||| ||||||||||||||||||||||||
Sbjct 790 AGCTCTTCCCTTGCTCTCTGTCTCTGCT 817
Score = 176 bits (95), Expect = 3e-43
Identities = 124/137 (91%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 139 gaagaagaaa-cacagaagagaaTCTTTTGTCTCTTCCCGAGAAAAACAAGATCGTCTTT 197
|||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GAAGCAGAAAGC-CAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAATAAGATCGTCTTT 59
Query 198 GGTAAAGAGACAACAAAAGCTT--TC-AGCTTCTTCATCGCTTATCGATCTTAACCAGTT 254
||| |||||||||||||| ||| | | ||||| |||||||||||||||||||||||||
Sbjct 60 GGTGAAGAGACAACAAAACCTTAATGGA-CTTCTACATCGCTTATCGATCTTAACCAGTT 118
Query 255 CCCTTCTGATTCTGAGA 271
|||| ||||||||||||
Sbjct 119 CCCTACTGATTCTGAGA 135
> Ahg497170 jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1
Length=897
Score = 671 bits (363), Expect = 0.0
Identities = 666/801 (83%), Gaps = 65/801 (8%)
Strand=Plus/Plus
Query 10 ATGTATTACAATCACGATCATCTCACTGCTTCAGGG-AAGAACATGTGGTCGAATTTCTA 68
||||||||| || | | ||||||||| ||||||||| ||| |||||||| |||||| |
Sbjct 1 ATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAG-GCATGTGGTTGAATTTATG 59
Query 69 TGTACTGGTTGATACGGCGGTGATGTTATATgaagaagaaaaacaacgtcgtaagattgt 128
||||||||||||| ||| || |||||||||||||||| |||||||||||| || |||
Sbjct 60 TGTACTGGTTGATGCGG-TGTTATGTTATATGAAGAAG---AACAACGTCGTACGACTGT 115
Query 129 ctctgaagaagaagaagaaa-cacagaagagaaTCTTTTGTCTCTTCCCGAGAAAAACAA 187
|||||||||||||| ||||| | |||||||||||| | | || || | |||||
Sbjct 116 CTCTGAAGAAGAAGCAGAAAGC-CAGAAGAGAATC-----T-T-TT----AG-ACAACAA 162
Query 188 GATCGTCTTTGGTAAAGAGACAACAAAAGCTTTC-AGCTTCTTCATCGCTTATCGATCTT 246
| | | | ||| | | || | ||| | |||||||||||||||||||| ||
Sbjct 163 -A-AG-C--T--TAATG-G-GTTTTTAA-C-TTCTA-CTTCTTCATCGCTTATCGATATT 210
Query 247 AACCAGTTCCCTTCTGATTCTGAGATCGAAGACCCACTAAACCATCATCAGTTGCTATCT 306
|||||||||||| |||||||||||| | ||| || |||||||| |||||||||||||
Sbjct 211 AACCAGTTCCCTACTGATTCTGAGA-C--AGA---ACAAAACCATCTTCAGTTGCTATCT 264
Query 307 TCTTCATGTTTCATCGCCGCTGATTTCGAGACACTACAAAACCCTAGTTCCGAACCTTGT 366
||||||||||||||| ||||||||| |||| || ||||| ||| | ||||| |
Sbjct 265 TCTTCATGTTTCATCCCCGCTGATTCCGAG--AC--GAAAACACTA---CAAAACCTAG- 316
Query 367 TCTTCACTCGTACTCTTTGATTGCAAGACGGCTGGGTCCGAGAAGACAGAGACGAAAGAC 426
|| || | |||| || | | ||||| ||||||| ||| ||||||||||||
Sbjct 317 --TT--CT-G-ACTC-TT-A-T-------GGCTGAGTCCGAGGAGAGGGAGACGAAAGAC 360
Query 427 CCACCAAACCCTAATTTCCC-ATGTCCTCTGTCTTTGTGCCTAACGGAGAACAAAAACCG 485
|||| ||| ||||| ||||| || | || |||||||||||||||||||||||| || |||
Sbjct 361 CCACAAAATCCTAA-TTCCCAATCTTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCG 419
Query 486 CAAGAGACGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAAGAGACGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGC 479
Query 546 TCCTTTTTCACAAACGGCGAGAGAGACGCCTGAGTGGCTTGTCAATGTGATGAGAGACAT 605
||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TCCTTCTTCAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACAT 539
Query 606 GAAAGAAGCCAAAGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTTACTGATGTAAA 665
|||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 540 GAAAGAAGTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAA 599
Query 666 CCCAACACAGAACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGAC 725
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 600 CCCAACACAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGAC 659
Query 726 TTCTGTGGAGTCAAGAATCATAGACAAAGACATCAAAAACGATAAGAAGATTGGAGTGGG 785
||||||||||| | ||||||| || |||||||||| || |||||||||||||||||||
Sbjct 660 GTCTGTGGAGTCCATAATCATAAACGAAGACATCAACAATAATAAGAAGATTGGAGTGGG 719
Query 786 AGCGATTCTTGTGGATCAACG 806
|| |||||| |||||||||||
Sbjct 720 AGTGATTCTCGTGGATCAACG 740
> Ahg930645 jgi|Araly1|930645|scaffold_303102.1
Length=475
Score = 603 bits (326), Expect = 1e-171
Identities = 409/450 (91%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 374 TCGTACTCTTTGATTGCAAGACGGCTGGGTCCGAGAAGACAGAGACGAAAGACCCACCAA 433
||||| ||||||||| ||||| ||||| ||||||| ||| |||||||||||||||| ||
Sbjct 1 TCGTAGTCTTTGATTACAAGATGGCTGAGTCCGAGGAGAGGGAGACGAAAGACCCACAAA 60
Query 434 ACCCTAATTTCCC-ATGTCCTCTGTCTTTGTGCCTAACGGAGAACAAAAACCGCAAGAGA 492
| ||||| ||||| || | ||||||||||||||||||||||||||| || ||||||||||
Sbjct 61 ATCCTAA-TTCCCAATCTTCTCTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGA 119
Query 493 CGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTT 552
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 120 CGTGCTGTGGAACAGAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCT 179
Query 553 TCACAAACGGCGAGAGAGACGCCTGAGTGGCTTGTCAATGTGATGAGAGACATGAAAGAA 612
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 TCAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAA 239
Query 613 GCCAAAGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTTACTGATGTAAACCCAACA 672
| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACA 299
Query 673 CAGAACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGACTTCTGTG 732
||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||
Sbjct 300 CAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTG 359
Query 733 GAGTCAAGAATCATAGACAAAGACATCAAAAACGATAAGAAGATTGGAGTGGGAGCGATT 792
||||| | ||||||| || |||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 360 GAGTCCATAATCATAAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGTGATT 419
Query 793 CTTGTGGATCAACGGTGTAAGAAGTGGGGT 822
|| ||||||||||||| | |||||||||||
Sbjct 420 CTCGTGGATCAACGGTCTGAGAAGTGGGGT 449
> Ahg930646 jgi|Araly1|930646|scaffold_303103.1
Length=237
Score = 268 bits (145), Expect = 4e-71
Identities = 193/215 (90%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 7 AGTATGTATTACAATCACGATCATCTCACTGCTTCAGGG-AAGAACATGTGGTCGAATTT 65
|||||||||||| || | | ||||||||| ||||||||| ||| |||||||||||||||
Sbjct 24 AGTATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAG-GCATGTGGTCGAATTT 82
Query 66 CTATGTACTGGTTGATACGGCGGTGATGTTATATgaagaagaaaaacaacgtcgtaagat 125
| ||||||||||||| ||| ||| |||||||||||||||| |||||||||||| ||
Sbjct 83 ATGTGTACTGGTTGATGCGG-GGTTATGTTATATGAAGAAG---AACAACGTCGTACGAC 138
Query 126 tgtctctgaagaagaagaagaaa-cacagaagagaaTCTTTTGTCTCTTCCCGAGAAAAA 184
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 139 TGTCTCTGAAGAAGAAGCAGAAAGC-CAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAA 197
Query 185 CAAGATCGTCTTTGGTAAAGAGACAACAAAAGCTT 219
|||||||||||||||| ||||||||||||||||||
Sbjct 198 CAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTT 232
> Ahg311675 jgi|Araly1|311675|fgenesh1_pm.C_scaffold_1000455
Length=813
Score = 113 bits (61), Expect = 2e-24
Identities = 236/319 (74%), Gaps = 17/319 (5%)
Strand=Plus/Plus
Query 676 AACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGACTTC-TGTGGA 734
|||||||||||||| ||| |||| | | || ||| |||||||||||||| | || ||
Sbjct 457 AACCGTCTCTCAATCCCTATCAATAGCGTAATCCAAAACGATTTCTTGAC-GCTTGACGA 515
Query 735 GTCAAGAATCA-T-A-GACAAAGACATCAAAAACGATA-AGAAGATTGGAGTGGGAGCGA 790
||||||| | | | | ||| | ||||||| ||| | | ||| || || |||| | ||
Sbjct 516 GTCAAGATTGATTGATGACGACGACATCACTAACCA-AGGGAATATGGGTGTGGCATCGT 574
Query 791 TTCTTGTGGATCAACGGT-GTAAGAAGTGGGGTGTGATG-TTAAAG-AGATGGGAGATGA 847
||||| ||||||||| || |||| |||||| || | | || ||| | |||| ||||
Sbjct 575 TTCTTATGGATCAAC-GTAGTAAAAAGTGGAACGT-AGGTTTTAAGCA-ATGGTTTATGA 631
Query 848 AGAAGGAATCAGGTA-AAGGAAGCTGGA-ATTACAATCTAATCTGTGGGTGGAACGATAT 905
|| || ||||| | || | ||||| || | | | ||| |||| | | |
Sbjct 632 CGACTGATTCAGGGAGCAGCTA-CTGGAGTTTTGTGT-TGAGAGGTGAATGGAGCAACGT 689
Query 906 TGTTGAGGCTAATGGATTGAAAGAAGGCGACAACATTAGTCTTTGGTCATTCAGGTCCTG 965
||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 690 CGTTAAGACTAATGGATTGAAAGAAGGCGACAACATCAGTCTTTGGTCTTTCAGGTCCAA 749
Query 966 TGGAATCCTCTGCTTTGCC 984
|| ||||||||||||||||
Sbjct 750 TGAAATCCTCTGCTTTGCC 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5