BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25190.1 Length=870 Score E Sequences producing significant alignments: (Bits) Value Ahg480028 jgi|Araly1|480028|fgenesh2_kg.3__2729__AT3G25190.1 1212 0.0 Ahg930634 jgi|Araly1|930634|scaffold_303091.1 708 0.0 > Ahg480028 jgi|Araly1|480028|fgenesh2_kg.3__2729__AT3G25190.1 Length=812 Score = 1212 bits (656), Expect = 0.0 Identities = 748/792 (94%), Gaps = 7/792 (1%) Strand=Plus/Plus Query 1 ATCAATCAAGATCAAGTAAGCATCACTACTTTGTACTAAATCCAAACCATGACTTCCAAC 60 ||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||||| Sbjct 1 ATCAATCAAAATCAAGTAAGCATCACTACTTAGTACTAGTTCCAAACCATGGCTTCCAAC 60 Query 61 GTTCAGCTTTCAGAAACAAACAGCCCAAGGAATCAGAAAACCCGTCCGAGAGCAGAGAAG 120 ||||||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||||| Sbjct 61 GTTCAGCTTTCAGAAACAAGCAGCCCAAGGAGTCAGAAAAACTGTCCGAGAGTAGAGAAG 120 Query 121 GAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTTGGAGCCAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 GAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTCGGAGCCAAC 180 Query 181 GATGGTCTGGTCACAGTCGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTC 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GATGGTCTGGTCACAGTTGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTC 240 Query 241 AAAGCAATGCTTCTCGTTGGTTTTGCTGGCCTTGTTGCGGGTGCTTGTAGTATGGCTATT 300 |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 241 AAAGCAATGCTTCTTGTTGGTTTTGCCGGCCTTGTAGCGGGTGCTTGTAGTATGGCTATT 300 Query 301 GGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTGAAACTGCACAGATGAAGAGAGCT 360 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 301 GGAGAGTTTGTGTCTGTATGCACCCAAAGGGATATTGAAACTGCGCAGATGAAGAGAGCT 360 Query 361 ATTGA-ACATAAGACATCACTATCAGCAATCGACGAACAAGAGGAGGAGGAGAAGAAAGA 419 ||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 361 ATTGAGA-ATAAGACATCATTATCAGAAATCGACGAACAAGAGGAGGAGGAGAAGAAAGA 419 Query 420 AAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCGGCGTTAGCGTTTTCAGTGGGTGC 479 | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 420 ACGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCAGCGTTAGCGTTTTCTGTGGGTGC 479 Query 480 AGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTGGTGGT 539 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 480 AGCAATGCCGCTTTTGGCCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTTGTGGT 539 Query 540 AGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGAGTGACTGGTGCGGTCTTGGGAAA 599 |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 540 AGCGATTGTGGCCACCATAGCATTAGTTGTGTTTGGAGTGACCGGTGCGGTCTTGGGAAA 599 Query 600 GACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATTGGTGGTTGGATGGCTATGGCTCT 659 ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 600 GACAAGTGTGGCTAAGTCGAGCGTTAGAGTGGTGATTGGTGGTTGGATGGCTATGGCTCT 659 Query 660 TACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCCATGCAAATCTAGAGGCTCTTTCA 719 ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| | Sbjct 660 TACCTTTGGTCTCACTAAGTTCATTGGCTCCGCAGCCATGCAAATTTAGAGGCTCTTT-A 718 Query 720 TGTGGTC--CTTCTTTCCATGCATCACAA-CTAGTGTTCCGTTATGTTTGTATTCTAATC 776 ||||||| ||| |||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 719 TGTGGTCTTCTTGTTTCCATGCATCCCAATC-AGTGTTCCGTTATGTTTGTATTCTAATC 777 Query 777 ATCACACTATCT 788 ||||||| |||| Sbjct 778 ATCACACAATCT 789 > Ahg930634 jgi|Araly1|930634|scaffold_303091.1 Length=664 Score = 708 bits (383), Expect = 0.0 Identities = 431/454 (95%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 278 CGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTG 337 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 214 CGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTATGCACCCAAAGGGATATTG 273 Query 338 AAACTGCACAGATGAAGAGAGCTATTGA-ACATAAGACATCACTATCAGCAATCGACGAA 396 ||||||| |||||||||||||||||||| | ||||||||||| |||||| |||||||||| Sbjct 274 AAACTGCGCAGATGAAGAGAGCTATTGAGA-ATAAGACATCATTATCAGAAATCGACGAA 332 Query 397 CAAGAGGAGGAGGAGAAGAAAGAAAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCG 456 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 333 CAAGAGGAGGAGGAGAAGAAAGAACGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCA 392 Query 457 GCGTTAGCGTTTTCAGTGGGTGCAGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAAT 516 |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 393 GCGTTAGCGTTTTCTGTGGGTGCAGCAATGCCGCTTTTGGCCGCTGTATTCATAGAGAAT 452 Query 517 CATAAGGTAAGAATGGTGGTGGTAGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGA 576 ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| Sbjct 453 CATAAGGTAAGAATGGTTGTGGTAGCGATTGTGGCCACCATAGCATTAGTTGTGTTTGGA 512 Query 577 GTGACTGGTGCGGTCTTGGGAAAGACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATT 636 ||||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||| Sbjct 513 GTGACCGGTGCGGTCTTGGGAAAGACAAGTGTGGCTAAGTCGAGCGTTAGAGTGGTGATT 572 Query 637 GGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCC 696 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 573 GGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACTAAGTTCATTGGCTCCGCAGCC 632 Query 697 ATGCAAATCTAGAGGCTCTTTCATGTGGTCCTTC 730 |||||||| |||||||||||| |||||||| ||| Sbjct 633 ATGCAAATTTAGAGGCTCTTT-ATGTGGTC-TTC 664 Score = 318 bits (172), Expect = 4e-86 Identities = 200/213 (94%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 29 CTTTGTACTAAATCCAAACCATGACTTCCAACGTTCAGCTTTCAGAAACAAACAGCCCAA 88 ||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 1 CTTAGTACTAATTCCAAACCATGGCTTCCAACGTTCAGCTTTCAGAAACAAGCAGCCCAA 60 Query 89 GGAATCAGAAAACCCGTCCGAGAGCAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTC 148 ||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 GGAGTCAGAAAAACTGTCCGAGAGTAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTC 120 Query 149 AGTGGCTAAGAGCTGCCTTGCT---T-GGAGCCAACGATGGTCTGGTCACAGTCGCTTCG 204 |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 121 AGTGGCTAAGAGCTGCCTTGCTCGATCGGAGCCAACGATGGTCTGGTCACAGTTGCTTCG 180 Query 205 CTAATGATGGGTGTTGGTTCTATCAAAGAAGAC 237 ||||||||||||||||||||||||||||||||| Sbjct 181 CTAATGATGGGTGTTGGTTCTATCAAAGAAGAC 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32213864865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5