BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25190.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480028 jgi|Araly1|480028|fgenesh2_kg.3__2729__AT3G25190.1 1212 0.0
Ahg930634 jgi|Araly1|930634|scaffold_303091.1 708 0.0
> Ahg480028 jgi|Araly1|480028|fgenesh2_kg.3__2729__AT3G25190.1
Length=812
Score = 1212 bits (656), Expect = 0.0
Identities = 748/792 (94%), Gaps = 7/792 (1%)
Strand=Plus/Plus
Query 1 ATCAATCAAGATCAAGTAAGCATCACTACTTTGTACTAAATCCAAACCATGACTTCCAAC 60
||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1 ATCAATCAAAATCAAGTAAGCATCACTACTTAGTACTAGTTCCAAACCATGGCTTCCAAC 60
Query 61 GTTCAGCTTTCAGAAACAAACAGCCCAAGGAATCAGAAAACCCGTCCGAGAGCAGAGAAG 120
||||||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||||
Sbjct 61 GTTCAGCTTTCAGAAACAAGCAGCCCAAGGAGTCAGAAAAACTGTCCGAGAGTAGAGAAG 120
Query 121 GAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTTGGAGCCAAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTCGGAGCCAAC 180
Query 181 GATGGTCTGGTCACAGTCGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGGTCTGGTCACAGTTGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTC 240
Query 241 AAAGCAATGCTTCTCGTTGGTTTTGCTGGCCTTGTTGCGGGTGCTTGTAGTATGGCTATT 300
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 241 AAAGCAATGCTTCTTGTTGGTTTTGCCGGCCTTGTAGCGGGTGCTTGTAGTATGGCTATT 300
Query 301 GGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTGAAACTGCACAGATGAAGAGAGCT 360
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGAGAGTTTGTGTCTGTATGCACCCAAAGGGATATTGAAACTGCGCAGATGAAGAGAGCT 360
Query 361 ATTGA-ACATAAGACATCACTATCAGCAATCGACGAACAAGAGGAGGAGGAGAAGAAAGA 419
||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATTGAGA-ATAAGACATCATTATCAGAAATCGACGAACAAGAGGAGGAGGAGAAGAAAGA 419
Query 420 AAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCGGCGTTAGCGTTTTCAGTGGGTGC 479
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 420 ACGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCAGCGTTAGCGTTTTCTGTGGGTGC 479
Query 480 AGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTGGTGGT 539
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 AGCAATGCCGCTTTTGGCCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTTGTGGT 539
Query 540 AGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGAGTGACTGGTGCGGTCTTGGGAAA 599
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 AGCGATTGTGGCCACCATAGCATTAGTTGTGTTTGGAGTGACCGGTGCGGTCTTGGGAAA 599
Query 600 GACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATTGGTGGTTGGATGGCTATGGCTCT 659
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 600 GACAAGTGTGGCTAAGTCGAGCGTTAGAGTGGTGATTGGTGGTTGGATGGCTATGGCTCT 659
Query 660 TACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCCATGCAAATCTAGAGGCTCTTTCA 719
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 660 TACCTTTGGTCTCACTAAGTTCATTGGCTCCGCAGCCATGCAAATTTAGAGGCTCTTT-A 718
Query 720 TGTGGTC--CTTCTTTCCATGCATCACAA-CTAGTGTTCCGTTATGTTTGTATTCTAATC 776
||||||| ||| |||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 719 TGTGGTCTTCTTGTTTCCATGCATCCCAATC-AGTGTTCCGTTATGTTTGTATTCTAATC 777
Query 777 ATCACACTATCT 788
||||||| ||||
Sbjct 778 ATCACACAATCT 789
> Ahg930634 jgi|Araly1|930634|scaffold_303091.1
Length=664
Score = 708 bits (383), Expect = 0.0
Identities = 431/454 (95%), Gaps = 4/454 (1%)
Strand=Plus/Plus
Query 278 CGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTG 337
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 214 CGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTATGCACCCAAAGGGATATTG 273
Query 338 AAACTGCACAGATGAAGAGAGCTATTGA-ACATAAGACATCACTATCAGCAATCGACGAA 396
||||||| |||||||||||||||||||| | ||||||||||| |||||| ||||||||||
Sbjct 274 AAACTGCGCAGATGAAGAGAGCTATTGAGA-ATAAGACATCATTATCAGAAATCGACGAA 332
Query 397 CAAGAGGAGGAGGAGAAGAAAGAAAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCG 456
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 333 CAAGAGGAGGAGGAGAAGAAAGAACGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCA 392
Query 457 GCGTTAGCGTTTTCAGTGGGTGCAGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAAT 516
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 393 GCGTTAGCGTTTTCTGTGGGTGCAGCAATGCCGCTTTTGGCCGCTGTATTCATAGAGAAT 452
Query 517 CATAAGGTAAGAATGGTGGTGGTAGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGA 576
||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 453 CATAAGGTAAGAATGGTTGTGGTAGCGATTGTGGCCACCATAGCATTAGTTGTGTTTGGA 512
Query 577 GTGACTGGTGCGGTCTTGGGAAAGACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATT 636
||||| |||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 513 GTGACCGGTGCGGTCTTGGGAAAGACAAGTGTGGCTAAGTCGAGCGTTAGAGTGGTGATT 572
Query 637 GGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCC 696
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 573 GGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACTAAGTTCATTGGCTCCGCAGCC 632
Query 697 ATGCAAATCTAGAGGCTCTTTCATGTGGTCCTTC 730
|||||||| |||||||||||| |||||||| |||
Sbjct 633 ATGCAAATTTAGAGGCTCTTT-ATGTGGTC-TTC 664
Score = 318 bits (172), Expect = 4e-86
Identities = 200/213 (94%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 29 CTTTGTACTAAATCCAAACCATGACTTCCAACGTTCAGCTTTCAGAAACAAACAGCCCAA 88
||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1 CTTAGTACTAATTCCAAACCATGGCTTCCAACGTTCAGCTTTCAGAAACAAGCAGCCCAA 60
Query 89 GGAATCAGAAAACCCGTCCGAGAGCAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTC 148
||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGTCAGAAAAACTGTCCGAGAGTAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTC 120
Query 149 AGTGGCTAAGAGCTGCCTTGCT---T-GGAGCCAACGATGGTCTGGTCACAGTCGCTTCG 204
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 121 AGTGGCTAAGAGCTGCCTTGCTCGATCGGAGCCAACGATGGTCTGGTCACAGTTGCTTCG 180
Query 205 CTAATGATGGGTGTTGGTTCTATCAAAGAAGAC 237
|||||||||||||||||||||||||||||||||
Sbjct 181 CTAATGATGGGTGTTGGTTCTATCAAAGAAGAC 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5