BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25200.1

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497492 jgi|Araly1|497492|fgenesh2_kg.628__1__AT3G25200.1          320    6e-87
  Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1        97.1    1e-19


> Ahg497492 jgi|Araly1|497492|fgenesh2_kg.628__1__AT3G25200.1
Length=466

 Score =  320 bits (173),  Expect = 6e-87
 Identities = 308/365 (84%), Gaps = 42/365 (12%)
 Strand=Plus/Plus

Query  159  GACGAGGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAACTCAGCTTTTTCAGACCT  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   GACGAGGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAACTCAGCTTTTTCAGACCT  153

Query  219  GCTTAAAGCAACTTTGAGGGGTGGACCAACGCCACATCATCGGATCTTGGGATCTCCACA  278
            || |       |            |  || ||||||| |||||||| |||||||||||||
Sbjct  154  GC-T-------C------------A--AA-GCCACATTATCGGATCATGGGATCTCCACA  190

Query  279  GACACAAGC-AA-A--A--G-A-A-TCAGAGGTTGCGGCTCCAAAA------C---C-GA  319
             |||||||| || |  |  | | | ||||||||||| |||||||||      |   | ||
Sbjct  191  CACACAAGCAAACACCACCGAAGATTCAGAGGTTGCAGCTCCAAAACCTTCCCGAGCGGA  250

Query  320  CCAAGACCCAACGCGAGCTTCTGGAATCTTGCTTGACGAGCGTATTCTTGCTGGAGTCAC  379
            ||| |||||||||||||||||||||||||| || | |||||||||||||| |||||||||
Sbjct  251  CCAGGACCCAACGCGAGCTTCTGGAATCTTCCTGGGCGAGCGTATTCTTGGTGGAGTCAC  310

Query  380  AACCAACCAATGAAACCTTCTTGGTTAAGTGGTACAAGAAGACCTCTCGAAAGATCATGA  439
            || ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  311  AATCAACCGATGAAACTTTCTTGGTTAAGTGGTACAAGAAGACCTCTGGAAAGATCATGA  370

Query  440  AAACAAAAGGTGTAATGGTGTTCAAGCTAGACCATAAAGGAAACGCTATTTACACTCAAG  499
            |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct  371  AAACAAAAGGTGTAATGGTGTTCAGGCTAGACCATAAAGGAAACGCTCTTTACACTCAAG  430

Query  500  ACATT  504
            |||||
Sbjct  431  ACATT  435


> Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1
Length=1110

 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 62/67 (93%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  165  GACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAACTCAGCTTTTTCAGACCTGCTTAA  224
            ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||
Sbjct  460  GACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAGCTCAGCTTTTGCAGACCGGCTCAA  519

Query  225  AGCAACT  231
            || ||||
Sbjct  520  AGTAACT  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18429149487


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5