BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25210.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930655 jgi|Araly1|930655|scaffold_303112.1 1729 0.0
> Ahg930655 jgi|Araly1|930655|scaffold_303112.1
Length=1180
Score = 1729 bits (936), Expect = 0.0
Identities = 1084/1154 (94%), Gaps = 15/1154 (1%)
Strand=Plus/Plus
Query 1 ATGTCGGCGACACTCCGACGCCTCATTCTTCTCACCTCCACAAATCGCTCCCGTAA-TCT 59
|||||||||||||||||||||||||| |||||| ||||| | ||||||||| ||| ||
Sbjct 21 ATGTCGGCGACACTCCGACGCCTCATCCTTCTCTCCTCCGCTAATCGCTCCATTAATTC- 79
Query 60 ATCTCCGCCGTTTCTTTCCACCGCCGTGAACCACCTATCTCTATCATTCTCTTCCGTCTC 119
||||||| ||| |||||| || ||||||| ||| |||||||||||||||||||||||||
Sbjct 80 ATCTCCGTCGTACCTTTCCTCCACCGTGAATCACTTATCTCTATCATTCTCTTCCGTCTC 139
Query 120 ATCTTCACCGGAATCACACACTTCCCCTTCCCGGATCCGAACCCGAACACCACTCGAAAC 179
||||||| ||||||||||||| |||||| ||||||| ||||||||||| ||||||| |||
Sbjct 140 ATCTTCATCGGAATCACACACCTCCCCTCCCCGGATTCGAACCCGAACTCCACTCGGAAC 199
Query 180 TCAATTCGAAACATGGATTCAGAATCTAAAACCAGGATTCACAAACTCCGACGTTGTGAT 239
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 200 TCAATTCGAAACATGGATCCAGAATCTAAAACCAGGATTCACAAACTCCGATGTTGTAAC 259
Query 240 AGCGTTACGAGCTCAATCCGATCCAGATCTAGCTCTCGACATATTCCGATGGACAGCTCA 299
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 260 AGCGTTACGAGCTCAATCAGATCCAGATCTAGCTCTCGACATTTTCCGATGGACAGCTCA 319
Query 300 ACAACGAGGCTACAAACACAATCACGAAGCTTACCACACTATGATCAAACAAGCAATCAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACAACGAGGCTACAAACACAATCACGAAGCTTACCACACTATGATCAAACAAGCAATCAC 379
Query 360 CGGAAAACGAAACAACTTCGTCGAAACGTTAATCGAAGAAGTAATCGCCGGAGCTTGTGA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CGGAAAACGAAACAAATTCGTCGAAACGTTAATCGAAGAAGTAATCGCCGGAGCTTGTGA 439
Query 420 AATGAGTGTTCCTCTCTACAATTGCATCATCAGATTCTGTTGTGGTCGTAAGTTTCTCTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AATGAGTGTTCCTCTCTACAATTGCATCATCAGATTCTGTTGTGGTCGTAAGTTTCTCTT 499
Query 480 CAATAGAGCTTTCGATGTTTATAACAAAATGCTTCGATCAGATGATTCAAAGCCTGACCT 539
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 500 TAATCGAGCTTTTGATGTTTATAACAAAATGCTTCGATCAGATGATTCAAAGCCTGATCT 559
Query 540 TGAAACTTATACTTTGCTACTAAGTTCATTGCTTAAGAGATTCAACAAATTGAATGTGTG 599
|||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 560 TGAAACCTATACTTTGCTTCTAAGCTCATTGCTTAAGAGATTCAATAAATTGAATGTGTG 619
Query 600 TTATGTGTATCTACACGCCGTTAGATCG-TTAACGAAGCAGATGAAATCGAATGGTGTGA 658
||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 620 TTATGTGTATCTACATGCCGTTAGATCGCTTA-CGAAGCAGATGAAATCGAGCGGTGTGA 678
Query 659 TTCCGGATACGTTTGTGTTGAATATGATTATCAAAGCTTATGCAAAGTGTCTTGAGGTTG 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 679 TTCCGGATACGTTTGTGTTGAATATGATTATCAAAGCTTATGCAAAGTGTCTTGAGGTAG 738
Query 719 ATGAAGCTATAAGAGTGTT-TAAAGAGATGGCTTTATATGGCTCTGAGCCTAATGCTTAT 777
||||||||||||| || || ||||||||||||||| ||||| |||||||| |||||||||
Sbjct 739 ATGAAGCTATAAGGGT-TTATAAAGAGATGGCTTTGTATGGTTCTGAGCCAAATGCTTAT 797
Query 778 ACTTATAGTTACTT-AGTTAAAGGGGTTTGTGAGAAAGGTAGAG-TTGGACAGGGTTTAG 835
|||||||||||||| | |||||||||||||||||||||| || | ||||||| |||||||
Sbjct 798 ACTTATAGTTACTTGA-TTAAAGGGGTTTGTGAGAAAGGAAG-GCTTGGACAAGGTTTAG 855
Query 836 GGTTTTATAAGGAGATGCA--AGTCAAAGGAATGGTTCCGAATGGGAGTTGTTATATGGT 893
||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 856 GGTTTTATAAGGAGATG-AGGAGT-AAAGGGATGGTTCCGAATGGGAGTTGTTATATGGT 913
Query 894 TTTGATTTGTAGTTTGTCTATGGAGAGGAGATTGGATGAAGCTGTTGAGGTTGTGTATGA 953
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 914 TTTGATTTGTAGTTTGTCTATGGAGAGGAGATTGAATGAAGCGGTTGAGGTTGTGTATGA 973
Query 954 TATGTTGGCGAATTCGTTGTCTCCGGATATGTTGACGTATAATACGGTGTTGACGGAGTT 1013
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 974 TATGTTGGCGAATTCGTTGTCTCCGGATATGTTGACTTATAATACGGTTTTGACGGAGTT 1033
Query 1014 GTGTAGGGGAGGTAGAGGGAGTGAAGCTCTTGAGATGGTTGAGGAATGGAAGAAACGGGA 1073
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1034 GTGTAGGGGAGGTAGAGGGGGTGAAGCTCTTGAGTTGGTTGAGGAATGGAAGAAACGGGA 1093
Query 1074 TCCGGTGATGGGTGAAAGGAATTACAGAACGTTGATGGATGAGGTTTATTTTTTGAATAA 1133
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1094 TCCGGTTATGGGTGAAAGGAATTACAGAACGTTGATGGACGAGGTGTATTTTTTGAACAA 1153
Query 1134 GGGATGATT-GATT 1146
||||||||| ||||
Sbjct 1154 GGGATGATTTGATT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5