BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25220.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930656 jgi|Araly1|930656|scaffold_303113.1 756 0.0
> Ahg930656 jgi|Araly1|930656|scaffold_303113.1
Length=500
Score = 756 bits (409), Expect = 0.0
Identities = 462/486 (95%), Gaps = 9/486 (2%)
Strand=Plus/Plus
Query 78 GATGAGCTCTGCATCCGCCATGAAAGCTGTTGGATTTTTGCTTCTGCTTACCATTCTAAC 137
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 21 GATGAGCTCTGCATCCGCCATGAAAGCTATTGGAGTTTTGCTTCTGCTTACCGTTCTAAC 80
Query 138 ATTAGCTTATGCGAAGAAGTCAGGTGATGTGACAGAGTTGCAGATTGGTGTTAAGTACAA 197
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 81 ATTAGCTTATGCGAAGAAGTCTGGTGATGTGACAGAGTTGCAGATTGGTGTCAAGTACAA 140
Query 198 GCCTCAGAAATGTGATCTCCAGGCTCACAAAGGGGATAAGATCAAGGTTCACTATCGGGG 257
|||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 141 GCCTCAGAAATGTGATCTTCAGGCTCACAAAGGGGACAAGATCAAGGTCCATTATCGGGG 200
Query 258 AAAGTTAACTGATGGAACTGTCTTTGATTCAAGTTTTGAGAGAGGTGACCCTATTGAGTT 317
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 201 AAAGTTAACTGATGGAACTGTCTTTGATTCAAGTTTTGAGAGAGGCGACCCTATTGAGTT 260
Query 318 TGAGCTTGGAACTGGTCAAGTCATCCCAGGATGGGACCAGGGTTTA-TTGGGAGCTTGTG 376
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 261 TGAGCTTGGAACTGGTCAAGTCATCCCAGGATGGGACCAGGGTTTACTT-GGCGCTTGTG 319
Query 377 TAGGTGAGAAGAGAAAGTTGAAAATCCCATCCAAGCTTGGTTATGGTGATAACGGCTCAC 436
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TAGGTGAGAAGAGAAAGCTGAAAATCCCATCCAAGCTTGGTTATGGTGATAACGGCTCAC 379
Query 437 CACCAAAAATCCCGGGTGGGGCGACACTGATATTCGACACCGAGCTTGTTGCTGTGAACG 496
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 380 CACCAAAAATCCCGGGTGGGGCGACACTGATATTCGACACTGAGCTTGTTGCTGTGAACG 439
Query 497 GAGAA-CCATCCAGCGAAGCGAAAT-CAAAGAATGAGCTTTGATTACACCATAATTGTTT 554
| ||| ||||||||||||| |||| |||||||||||||||||||||| | | ||||||
Sbjct 440 G-GAAACCATCCAGCGAAG-GAAAAGCAAAGAATGAGCTTTGATTACATC-T--TTGTTT 494
Query 555 TTCATT 560
||||||
Sbjct 495 TTCATT 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5