BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25225.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 1186 0.0
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 924 0.0
Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 555 4e-157
Ahg930371 jgi|Araly1|930371|scaffold_302828.1 243 3e-63
Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 178 9e-44
Ahg925199 jgi|Araly1|925199|scaffold_200760.1 102 6e-21
Ahg314206 jgi|Araly1|314206|fgenesh1_pm.C_scaffold_1002986 95.3 9e-19
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 84.2 2e-15
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 84.2 2e-15
Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469 84.2 2e-15
Ahg929032 jgi|Araly1|929032|scaffold_301489.1 71.3 2e-11
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 71.3 2e-11
Ahg929886 jgi|Araly1|929886|scaffold_302343.1 67.6 2e-10
Ahg929561 jgi|Araly1|929561|scaffold_302018.1 63.9 3e-09
Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 63.9 3e-09
Ahg930411 jgi|Araly1|930411|scaffold_302868.1 62.1 9e-09
Ahg929147 jgi|Araly1|929147|scaffold_301604.1 62.1 9e-09
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 1186 bits (642), Expect = 0.0
Identities = 991/1148 (86%), Gaps = 69/1148 (6%)
Strand=Plus/Plus
Query 48 AAGATATCCAATCTTCCAAGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTCCGTTGACG 107
||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 77 AAGATGTCCAATCTTCCAAGAGATTTGTCGGAGGAGGTGCTCTGTAGAATTCCGTTGACA 136
Query 108 TCTCTGAGAACTGTTTGATCTTCTTGCAAAACGTGGAACACGTTATCCAAATATGAGAGC 167
|||||||| |||| ||||| ||||||||| ||||| ||| |||||||||| || ||||
Sbjct 137 TCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAGC 196
Query 168 TTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAGAGAGTTTATG 227
|||||||||||| ||| | || |||||||||| |||| | ||| |||| ||||| |||
Sbjct 197 TTTGCAAAGAAGCACC-T--TGCTCAAGCAAAAGTAGCAG--AAGCAAAG-GAGTTCATG 250
Query 228 ATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAAACAAGGTT 287
||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 251 GTGGTCATGATGAAGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACACGGTT 310
Query 288 GAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGC---GATGAAGTTGAT 344
|||||||||||||||||||| ||||||||||||||| | |||||| |||||| |||||
Sbjct 311 GAATCATCATGTATAAAACGCGAAGCTAAACTTATTGGCTTAGGCGATGATGAACTTGAT 370
Query 345 ATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAGACAAG 404
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 371 ATATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAAG 430
Query 405 ACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACCCGTACGATCGAACCCACA 464
|||||||| |||||||||||||| | ||||||| ||||||||| | ||||| ||||||
Sbjct 431 ACTAGGCTCGTGGTTTGGAACCC--CT-ATTGGGGGCATACCCGTCCAATCGAGCCCACA 487
Query 465 CAT-AACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAACAAGAGC 523
||| || | | ||| | || ||| | | || | |||||||||||||||| ||||||||
Sbjct 488 CATCAA-TTCAACAAACTCGATA-G-CT-AT-T-CGTATGCTCTCGGATACGACAAGAGC 541
Query 524 TAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACTTACTGGATGAGGGTTATGGATG- 582
|||| |||||||||||||||||||| | || ||||| | ||| | || |
Sbjct 542 -AGCA---AATCCCACAAAATCTTGAGG---GGTA-TTACT---T----GTT-T-GAAGC 584
Query 583 AGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGATT 642
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 585 CCTTCAAAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGACT 644
Query 643 GG-ACGATAAGTTA-TATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGTTTGC 700
|| || |||| | ||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 645 GGCAC-TTAAG-GACTATTCACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTTGC 702
Query 701 T-ACTGAG-AGATATTCCGAAA-C--------AGACGATTATTTCTTAGTCTGTTTTGAT 749
| | ||| || |||||||||| | |||||||| |||||||||||||||||||
Sbjct 703 TGA-AGAGAAG-TATTCCGAAACCAGAGAAATAGACGATTTTTTCTTAGTCTGTTTTGAT 760
Query 750 TTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTTTGTGTTTGTTAAATCTGAA 809
||||||||||||||||||||||| | |||| |||||||||||| ||||| | ||||||
Sbjct 761 TTCACAAGAGAGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAA 820
Query 810 GATGTTATGTGTGTATCTAATGTTAGAGAAGAGCAGCTTGCGGTTTTATATCAGCCGTGG 869
|||| |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 821 GATGCTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATATCAGCCGTGG 880
Query 870 GATAAATAAAAGATGGAGATCTGGATTACGTCTACGATTGAGCCCAACGCGGTGTCGTGG 929
|||| || |||||||||||||||| ||||||||| |||||||||||||||||| || |||
Sbjct 881 GATACATTAAAGATGGAGATCTGGGTTACGTCTAAGATTGAGCCCAACGCGGTCTCCTGG 940
Query 930 AACAGCAAGGTGTTCTTATCAGTGAGTATAAGAA-AACTCATTGGCCCTCCGTTTCAGTT 988
||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||| ||
Sbjct 941 AACAGCAAGGTGTTCTTATCAGTGAGTTTAA-AACAACTCATTGGCCCTCAGTTTCATTT 999
Query 989 TTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1048
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTATTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1059
Query 1049 CTACAAAGATAAGCGCAACATAGCTTACATCATTGGAGACTTTGGAGTCGATGGATCCTT 1108
||||||||||||||||||||| |||||||||||||||| | ||| | | | ||||||
Sbjct 1060 CTACAAAGATAAGCGCAACATGGCTTACATCATTGGAG--T--GGA-T-G--G-ATCCTT 1110
Query 1109 TAAAGAAG-GGATCTCGGAGAATCAGCCTACGCAATGTGTTACCCACTTATGTGCTCTTA 1167
|||||||| |||||| |||||||||| ||| || |||||||||||| ||||||||||
Sbjct 1111 TAAAGAAGTGGATCTTGGAGAATCAG---ACGTAAGGTGTTACCCACTCGTGTGCTCTTA 1167
Query 1168 TGTTCCAA 1175
||||||||
Sbjct 1168 TGTTCCAA 1175
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 924 bits (500), Expect = 0.0
Identities = 705/800 (88%), Gaps = 29/800 (4%)
Strand=Plus/Plus
Query 42 ATGACTAAGATATCCAATCTTCCAAGGGATTTGGCGGAAGAGGTGCTCTGT-AGAATTCC 100
||||| ||||||||||||||||| || ||||||||||| |||||||||||| || |||||
Sbjct 1 ATGACGAAGATATCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAG-ATTCC 59
Query 101 GTTGACGTCTCTGAGAACTGTTTGATCTTCTTGCAAAACGTGGAACACGTTATCCAAATA 160
|||||| |||||| ||||| | |||| ||||||||| ||||||||| |||||||||||
Sbjct 60 GTTGACATCTCTGCGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATA 119
Query 161 TGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGG-AAAGAG 219
|||||| ||||||||||||||||||||||||||||||||| |||| | ||||| ||||||
Sbjct 120 TGAGAGTTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAAGTAGCAG-AAAGGGAAAGAG 178
Query 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAA 279
|||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 179 AGTTTATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATCTTCAAA 238
Query 280 ACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGCGATGAAG 339
|||| |||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||
Sbjct 239 ACAATGTTGAATCATCATGTATAAAGCGTGAAGCTGAACTTATTAGCTTAGGTGATGAAG 298
Query 340 TTGATATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAG 399
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 299 TTGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAG 358
Query 400 ACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACCCGTACGATCGAAC 459
||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 359 ACAAGACTAGGCTCGTGGTTTGGAACCCGTAT--T-GGGGACATACCCGGACGATCGAAC 415
Query 460 CCACACATAACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAACAA 519
||||||||||| || ||| || |||| ||| ||| |||||||||||||||||||||
Sbjct 416 TCACACATAACTTACAGATAATCGATAG--ATA-TAT--GTATGCTCTCGGATACAACAA 470
Query 520 GAGCTAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACTTACTGG-ATGAGGGTTATG 578
|||| |||| |||||||||||||||||||||| ||||||||||| || || ||
Sbjct 471 GAGC-AGCA---AATCCCACAAAATCTTGAGGTTCATTACTTACTGGGATCCCAATTTTG 526
Query 579 GATGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCA 638
| ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 527 AA-GAGTTCAAAATCTACGATTTGAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCA 585
Query 639 GATTGGACGATAAGTTATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGTTT 698
|| |||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 586 GACTGGACGATAAGTCATATTAACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTT 645
Query 699 GCTACTGAGA-GATATTCCGAAACA-GA----C-GA---TTATTTCTTAGTCTGTTTTGA 748
|||| ||||| | ||||| |||||| || | || || ||||||||||||||||||
Sbjct 646 GCTAATGAGAAG-TATTCTGAAACAAGAAGAACCGACCATTTTTTCTTAGTCTGTTTTGA 704
Query 749 TTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTTTGTGTTTGTTAAATCTGA 808
||||||||||||||||||||| || |||||| |||||||||||| ||||| | |||||
Sbjct 705 TTTCACAAGAGAGACATTTGGACCGCTTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGA 764
Query 809 AGATGTTATGTGTGTATCTA 828
||||| |||| |||||||||
Sbjct 765 AGATGCTATGAGTGTATCTA 784
Score = 411 bits (222), Expect = 8e-114
Identities = 290/321 (90%), Gaps = 12/321 (4%)
Strand=Plus/Plus
Query 858 TATC-AG-CCGTGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGATTGAGCCCA 915
|||| || |||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 779 TATCTAGTCCGTGGGATACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCCA 838
Query 916 ACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCC 975
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 839 ACGTGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAAAAAACTCATTGCCC 898
Query 976 CTCCGTTTCAGTTTTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 1035
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCAGTTTCAGTTTTACTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 958
Query 1036 TTTTTGATAAAGACTACAAAGATAAGCGCAACATAGCTTACATCATTGGAGACTTTGGAG 1095
||||||||||| ||||||| ||| ||||| |||||||||||||||||||| | |||
Sbjct 959 TTTTTGATAAATACTACAACGATCGGCGCAGCATAGCTTACATCATTGGAG--T--GGA- 1013
Query 1096 TCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATCAGCCTACGCAATGTGTTACCCAC 1154
| | | |||||| |||| || ||||||||||||||| || |||||||||||||||||||
Sbjct 1014 T-G--G-ATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCAC 1069
Query 1155 TTATGTGCTCTTATGTTCCAA 1175
|| ||||||||||||||||||
Sbjct 1070 TTGTGTGCTCTTATGTTCCAA 1090
> Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386
Length=1329
Score = 555 bits (300), Expect = 4e-157
Identities = 901/1175 (77%), Gaps = 105/1175 (9%)
Strand=Plus/Plus
Query 42 ATGACTAAGATATCCAATCTTCC-AAGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTCC 100
|||||||||||||| |||||||| || |||||||| ||| |||||||||| ||| ||||
Sbjct 1 ATGACTAAGATATCTAATCTTCCTAA-GGATTTGGTGGAGGAGGTGCTCTCTAGGGTTCC 59
Query 101 GTTGACGTCTCTGAGAACTGTTTGATCT-TCTTGCAAAACGTGGAACACGTTATCCAAAT 159
||| || ||| | |||| | | ||| | ||||||||| |||||||| |||||||||
Sbjct 60 GTTAACATCTTTAAGAAATATCCGAT-TAACTTGCAAAAAGTGGAACATTTTATCCAAAG 118
Query 160 ATGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAGAG 219
||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct 119 GTGAGAGCTTTGCAAAGAAGCACCTTGGTGATCAAGCAAAAGAAGCAGCAACGGAAAGAG 178
Query 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAA 279
|||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |
Sbjct 179 AGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGAGTCAATCTTCACA 238
Query 280 ACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGCGATGAAG 339
| | |||| | ||||||||||| | ||||| | |||||||| | |||| ||| ||||
Sbjct 239 ATGACGTTG-A--GTCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTAGACGAAGAAG 295
Query 340 TTGATATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAG 399
||| |||||||||||||||||||| ||||||||||| || || |||| | |||
Sbjct 296 ACGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTG---TT-AT--GCATTATGGAAG 349
Query 400 ACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACC-CGTACGATCGAA 458
| || |||||| | ||||||||||||||| | ||||||| |||||| || |||||
Sbjct 350 ATAACACTAGGATTGTGGTTTGGAACCCG--T-ATTGGGGGCATACCTGGT-GGATCGTG 405
Query 459 CCCACACATAACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAA-C 517
|| |||||||| | ||||| ||| | || | |||| ||||||||| |||||||| |
Sbjct 406 CCTACACATAATTTCCACAAATT--GGACGT-T--TATACGTATGCTCTTGGATACAAGC 460
Query 518 AAGAGCTAGCAGCT-A-ATC-C--C-ACAAAATCTTGAGGTTTGTT-A-CTTACT-GGAT 568
||||| |||| | | || | | ||||||||||||| ||| || | || || | |
Sbjct 461 -AGAGC-AGCAAATCATGTCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCGCA- 517
Query 569 GAGGGTTATGGATGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGA 628
||| | ||| |||| ||||||| || | |||||||||||||||| |||||||||
Sbjct 518 -CTTGTT-T---TGAATTCAAAATCTACAATATAAACTCTGATTCATGGAAGGTTCTTGA 572
Query 629 TGTCACTCCAGATTGGACGATAAG-TT-ATATGAACCTTGGCGTGTCTCTCAAGGGAAAT 686
|||| |||||||||||| ||| || || ||| | | ||||||||||||||||||||||
Sbjct 573 TGTCTCTCCAGATTGGAAGAT-AGATTCTTAT-AGTCGTGGCGTGTCTCTCAAGGGAAAT 630
Query 687 GCATACTGGTTTGCTACTGAGAGATATTCCGAAACAGACG-ATTA-TTTCTTAGTCTGTT 744
| ||||||||||||| ||||| | | || || | | || ||||||||||||||
Sbjct 631 ACGTACTGGTTTGCTA--GAGAG--A---GGCAA-GGAAGCAGTACTTTCTTAGTCTGTT 682
Query 745 TTGATTTCACAAGAGAGACATTTGGGCCTC-TTTTGACTCTTCCGTTTGTGTTTGTTAAA 803
|||||||||||||||||| |||| | | | |||| |||| ||| || | | || |
Sbjct 683 TTGATTTCACAAGAGAGAGATTTAGATCACGTTTT-CCTCTGCCGATTCAG-CCG-TATA 739
Query 804 TCTGAAGATGTTATGTGTGTATCTAATGTTAGAGAAGAGCAGCTTGCGGTTTTATATCAG 863
| | |||| || || |||||| |||||||||||||||||| |||||||||| ||||
Sbjct 740 T-TTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCAG 798
Query 864 CCG-T-GGGA-TA--A-ATA-AAAGATGGAGATCTGGATTACGTCTACG--A-TTGAGCC 913
|| | || || | | | |||||||||||||||| || | ||| | |||||||
Sbjct 799 -CGCTCAAGATTATCAGAGATGGAGATGGAGATCTGGATAAC--C-ACGAAACTTGAGCC 854
Query 914 CAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGG 973
|||||||||||||||||||||||||||||||||| || || | ||| | | ||
Sbjct 855 CAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTAGCAATG-G-ATA-------T--T-GG 902
Query 974 CCCTCCGTTTCAGTTTT--GTTTGGG--G-A-GTTTCTTCATTGACGAGGAGAAGAAAGT 1027
|| || ||||||||| ||| | | | | ||||||| || || ||||||||||||||
Sbjct 903 CCTTCAATTTCAGTTTCAAGTTAGAGCTGCAAGTTTCTTTATCGATGAGGAGAAGAAAGT 962
Query 1028 CGCTGTGGTTTTTGATAAAGACTACAAAGATA-AGCG-CAACAT-AGCTTACAT--CATT 1082
| |||||||||||||||||| | ||| || || | | || | | | |||| | ||
Sbjct 963 TGTTGTGGTTTTTGATAAAGAGAAAAAATATTTAGTGTCCAC-TCA-CA-ACATAGC-TT 1018
Query 1083 GGAGACTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATCAGCCTACGCA 1141
| |||||||| |||||| |||| || ||| |||||| ||| ||| || || |
Sbjct 1019 ACAT-CTTTGGAGAGGATGGAACCTTGGAACAAGTGGATCTTGGATTATCTGCAGACA-A 1076
Query 1142 ATGT-GTTACCCACTTATGTGCTCTTATGTTCCAA 1175
|| | |||| |||||| |||||| |||||||||||
Sbjct 1077 ATTTTGTTATCCACTTGTGTGCTGTTATGTTCCAA 1111
> Ahg930371 jgi|Araly1|930371|scaffold_302828.1
Length=984
Score = 243 bits (131), Expect = 3e-63
Identities = 364/470 (77%), Gaps = 41/470 (9%)
Strand=Plus/Plus
Query 731 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTT 790
||||||| ||||||||||||||||||||||||||||| |||| | |||| |||| ||| |
Sbjct 499 TTTCTTACTCTGTTTTGATTTCACAAGAGAGACATTTAGGCCGCGTTTGCCTCTGCCGGT 558
Query 791 TGTGTTTGTTAAATCT-GAAGATGTTATGTGTGT-ATCTAATGTTAGAGAAGAGCAGCTT 848
|| || || | ||| |||||| | ||| | | ||||| ||||||||| |||||||||
Sbjct 559 TGAGTC-GT-A--TCTTGAAGATACTCTGT-TATTATCTAGTGTTAGAGATGAGCAGCTT 613
Query 849 GCGGTTTTATATCAGCCG-TGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGAT 907
||||| |||| ||||| ||| ||| || | |||||||||||||| | || ||| |||
Sbjct 614 GCGGTGTTATTTCAGCATATGG-ATACATTACAGATGGAGATCTGGGTGACAACTAAGAT 672
Query 908 TGAGCCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGT-GAGTATAAGAAAAC 966
|||||||||| |||||||||||| ||||||| | ||||||||||| || ||| ||| |||
Sbjct 673 TGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGA-TATGAGAGAAC 731
Query 967 TCATTGGCCCTC-CGTTTCA-GTTTT-GTTTG-GG--G-A-GTTTCTTCATTGACGAGGA 1018
||| ||| | | | | | ||||| |||| || | | ||||||||| ||| |||||
Sbjct 732 TCACCGGCATTTAC-TCT-ATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATGAGGA 789
Query 1019 GAAGAAAGTCGCTGTGGTTTTTGATAAAG-ACTACA-A--A-GATAA-GCGCAACATAGC 1072
||||||||| || |||||||||||||||| | | | | | ||| | |||||| |||
Sbjct 790 GAAGAAAGTTGCAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAATGCAGC 849
Query 1073 TTACATCATTGGAGACTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATC 1131
|||||| ||||||| ||| | | | |||||| ||||||| |||||| ||||||||
Sbjct 850 TTACATTGTTGGAGA----GGA-T-G--G-ATCCTTGAAAGAAGTGGATCTTGGAGAATC 900
Query 1132 AGCCTA-CGCAA-TGTGTTACCCACTTATGTGCTCTTATGTTCCAACTTC 1179
|| | | || | | ||| |||| |||||||||||||||||| |||
Sbjct 901 T-CCAAACAAAAATCTCCGACC-ACTTGTGTGCTCTTATGTTCCAAGTTC 948
> Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945
Length=981
Score = 178 bits (96), Expect = 9e-44
Identities = 433/582 (74%), Gaps = 77/582 (13%)
Strand=Plus/Plus
Query 164 GAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCT---GCAAAGG-AAAGAG 219
|||||||||||||||| ||| | || |||||||| | ||||| ||||||| |||| |
Sbjct 27 GAGCTTTGCAAAGAAGCACC-T--TGCTCAAGCAAGAGTAGCTGCAGCAAAGGAAAAG-G 82
Query 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAAT-TGATGAGA-GTCAATCTTCA 277
|||||||| ||||| |||||||| |||||||||||| || ||||| | || ||||||||
Sbjct 83 AGTTTATGGTGGTCATGATGATGGATTTTAGGGTTT-ATCTGATG-CACGTGAATCTTCA 140
Query 278 --A-AACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTA--TTAGTTTA-G- 330
| |||||||||||| | ||| || |||||| ||| || ||||| || | |
Sbjct 141 CTACGACAAGGTTGAAT--T-ATGCATGAAACGTCAAGGTACACTTATTTTCCCCGACGC 197
Query 331 -GC-GATGAAGT-TGATATATC-TCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATC 386
| ||| || | | || || | |||||||||||||||| ||||||||||||||| ||||
Sbjct 198 CTCAGATCAAATCT-ATGTA-CGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC 255
Query 387 AGCATCACCAAAGACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTG-GGGACATAC 445
| | |||||||| ||||||| || |||| |||||| | |||| ||| || ||
Sbjct 256 --C-T---GAAAGACAACCCTAGGCTCGTTGTTTTTAACCCG--T-ATTGTGGG-CA-AC 304
Query 446 C-C-GTACGATCGAACCCACACATAACTGCCACATATTCA-ATAGGTATAATATAT-GTA 501
| | || ||||||| ||||| |||| | | || | || || || ||| | ||
Sbjct 305 CACGGT-GGATCGAAGCCACATATAA-T---A-AT-CAGAGATTGGAATTTTAT-TCGTT 356
Query 502 TGCTCTCGGATACAACAAGAGCTAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACT- 560
| |||| |||| |||| ||| | || | ||||||||||||||||||| ||| || |
Sbjct 357 TTCTCTGGGAT---ACAATAGC-AACACCAAATCCCACAAAATCTTGAGATTTATT-TTA 411
Query 561 TA-C-TGG--------ATGAGGGTTATGGATGAGTTCATAATCTACGATTTTAACTCTGA 610
|| | ||| | || || ||| |||||||| ||||||||| |||||||||||
Sbjct 412 TATCATGGTCTTTTCTCTTTGGCTT-TGGCTGAGTTCAAAATCTACGACTTTAACTCTGA 470
Query 611 TTCATGGAGGGTTCTTGATGTCACTCCAGATTGG-ACGATA-AGTTA-TAT-GAACCTTG 666
||||||||||||||||||||| |||| ||| ||| || ||| | || ||| | | ||
Sbjct 471 TTCATGGAGGGTTCTTGATGTTACTCGAGACTGGGAC-ATAGA-TTGGTATCG--CGGTG 526
Query 667 GCGTGTCTCTCAAGGGAAATGCATACTGGTTTGCTACTGAGA 708
| || |||||||||||||||||||| | ||||||| |||||
Sbjct 527 GTGTCTCTCTCAAGGGAAATGCATATTTCTTTGCTAATGAGA 568
> Ahg925199 jgi|Araly1|925199|scaffold_200760.1
Length=1195
Score = 102 bits (55), Expect = 6e-21
Identities = 307/423 (73%), Gaps = 39/423 (9%)
Strand=Plus/Plus
Query 41 AATGACTAAGATATCCAATCTTCCA-AGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTC 99
||||| || || |||||||||||| | || |||| |||||| | |||| |||| |||
Sbjct 20 AATGAAGAACATGTCCAATCTTCCACA-AGACTTGGTAGAAGAGATACTCTCTAGAGTTC 78
Query 100 CGTTGACGTCTCTGAGAACTG-TTTGATCTTCTTGCAAAACGTGGAACACGT-TATCCAA 157
||||||| ||| ||||| | | | ||||| |||| |||| ||||||||| | ||| ||
Sbjct 79 CGTTGACATCTTTGAGAGC-GATGCGATCTACTTGTAAAAAGTGGAACAC-TCTATTTAA 136
Query 158 ATATGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAG 217
| ||||||| ||| |||||||| || ||| | || | | || | ||||||||
Sbjct 137 AGATGAGAGGTTTACAAAGAAGCACATTGCCCAAGTTGCTGTAGAAACTACTAAGGAAAG 196
Query 218 AGAGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCA 277
|||||| || | || || || | || ||||||| ||| || ||||||||||||| ||
Sbjct 197 GGAGTTTGTGGCGATCATGTTGCTAAACTTTAGGGCTTATTTAATGAGAGTCAATC-TCC 255
Query 278 AAACAAGGT--T--GAA-TC--AT-CATGTA-TAAAACGTGA-AGCTAAACTTATTAGTT 327
|| || | | || || || ||| || |||| | | | || ||||||||||||
Sbjct 256 AAGGAA-TTCATAACAACTCTAATCCAT-TATTAAAGCCT-ATAGGTAAACTTATTAGCC 312
Query 328 TAG-----GC-GATGAAGTTGATATATCTCAAGTCTTTC-ACTGC-AACGGTTTATTGTT 379
||| | ||| |||| ||||||||| || |||| | ||| || |||||||||||
Sbjct 313 TAGACACTTCAGATCAAGTCAATATATCTCGGGTATTTCGA-TGCGAA-GGTTTATTGTT 370
Query 380 ATTCATCAGCATCACCAAAGACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGG 439
|| || | || || |||||| | ||||||||||| |||||||| |||||| || |||
Sbjct 371 ATGCA-C--CA-CA--AAAGACTACACTAGGCTAGTAGTTTGGAATCCGTAT--TT-GGG 421
Query 440 ACA 442
|||
Sbjct 422 ACA 424
> Ahg314206 jgi|Araly1|314206|fgenesh1_pm.C_scaffold_1002986
Length=957
Score = 95.3 bits (51), Expect = 9e-19
Identities = 151/195 (77%), Gaps = 23/195 (12%)
Strand=Plus/Plus
Query 581 TGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGA 640
|||||| | |||||||||| ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 390 TGAGTTTAAAATCTACGATATTAACTCTGATTCATGGAGGGTTCTTGATATCAGTCCATA 449
Query 641 TTGG-ACGATA-AGT-T-ATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGT 696
|| | |||| | | | ||| | | | ||||| ||| ||||| ||||| | |||||||
Sbjct 450 CTGTCA-GATACACTCTGATA-GT-CGT-GGCGTCTCTGTCAAGAGAAATACGTACTGGT 505
Query 697 TTGCTACTGAGAGATATTCCGAAACAGACGATTATTTCTTAGTCTGTTTTGATTTCACAA 756
||| | | ||| | | | | | |||| || | ||||||||||||| |||||||||
Sbjct 506 TTG-T--T-AGA-A-A--CAGG--C-GACG-TT-T--CTTAGTCTGTTTTAATTTCACAA 550
Query 757 GAGAGACATTTGGGC 771
|||||| |||||||
Sbjct 551 GAGAGAGTTTTGGGC 565
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 84.2 bits (45), Expect = 2e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 998 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1048
|||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 975 GAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGAAAAAGA 1025
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 84.2 bits (45), Expect = 2e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 998 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1048
|||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1371 GAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGAAAAAGA 1421
> Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469
Length=987
Score = 84.2 bits (45), Expect = 2e-15
Identities = 57/62 (92%), Gaps = 3/62 (5%)
Strand=Plus/Plus
Query 1001 TTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACAA-AGATA 1059
||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||||
Sbjct 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC-A-AAGAGATA 897
Query 1060 AG 1061
||
Sbjct 898 AG 899
> Ahg929032 jgi|Araly1|929032|scaffold_301489.1
Length=1468
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 996 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTT 1039
|||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1353 GGGAGTTTCTTCATTGACGAGGAGAAGAAAATTGCTGTGGTTTT 1396
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 71.3 bits (38), Expect = 2e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 998 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATA 1044
||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct 988 GAGCTTCTTCATTGACGAGGAGAAGAAAGTCGTTGTGCTTTTTGATA 1034
Score = 67.6 bits (36), Expect = 2e-10
Identities = 46/51 (90%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 594 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGATTGG 644
|||||||| | ||||||||||||||||||||||||||||| ||| || |||
Sbjct 557 TACGATTTCAGCTCTGATTCATGGAGGGTTCTTGATGTCAATCCTGACTGG 607
> Ahg929886 jgi|Araly1|929886|scaffold_302343.1
Length=742
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1037
|||||||||||||||||||||||||||||||| ||||||
Sbjct 403 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441
> Ahg929561 jgi|Araly1|929561|scaffold_302018.1
Length=1027
Score = 63.9 bits (34), Expect = 3e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 591 ATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 630
||||| || |||||||||||||||||||||||||||||||
Sbjct 546 ATCTATGAGTTTAACTCTGATTCATGGAGGGTTCTTGATG 585
> Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1
Length=1546
Score = 63.9 bits (34), Expect = 3e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 594 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 630
|||||||| ||||||||||||||||||||||||||||
Sbjct 924 TACGATTTGAACTCTGATTCATGGAGGGTTCTTGATG 960
> Ahg930411 jgi|Araly1|930411|scaffold_302868.1
Length=1141
Score = 62.1 bits (33), Expect = 9e-09
Identities = 42/46 (91%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGT-GGTTTTTGAT 1043
|||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 840 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTT-GAT 884
> Ahg929147 jgi|Araly1|929147|scaffold_301604.1
Length=1290
Score = 62.1 bits (33), Expect = 9e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1037
||||||||||||||||||||||||||||| |||| ||||
Sbjct 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGCGGTT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5