BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25225.1 Length=1202 Score E Sequences producing significant alignments: (Bits) Value Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 1186 0.0 Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 924 0.0 Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 555 4e-157 Ahg930371 jgi|Araly1|930371|scaffold_302828.1 243 3e-63 Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 178 9e-44 Ahg925199 jgi|Araly1|925199|scaffold_200760.1 102 6e-21 Ahg314206 jgi|Araly1|314206|fgenesh1_pm.C_scaffold_1002986 95.3 9e-19 Ahg925743 jgi|Araly1|925743|scaffold_201304.1 84.2 2e-15 Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 84.2 2e-15 Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469 84.2 2e-15 Ahg929032 jgi|Araly1|929032|scaffold_301489.1 71.3 2e-11 Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 71.3 2e-11 Ahg929886 jgi|Araly1|929886|scaffold_302343.1 67.6 2e-10 Ahg929561 jgi|Araly1|929561|scaffold_302018.1 63.9 3e-09 Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 63.9 3e-09 Ahg930411 jgi|Araly1|930411|scaffold_302868.1 62.1 9e-09 Ahg929147 jgi|Araly1|929147|scaffold_301604.1 62.1 9e-09 > Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 Length=1263 Score = 1186 bits (642), Expect = 0.0 Identities = 991/1148 (86%), Gaps = 69/1148 (6%) Strand=Plus/Plus Query 48 AAGATATCCAATCTTCCAAGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTCCGTTGACG 107 ||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||| Sbjct 77 AAGATGTCCAATCTTCCAAGAGATTTGTCGGAGGAGGTGCTCTGTAGAATTCCGTTGACA 136 Query 108 TCTCTGAGAACTGTTTGATCTTCTTGCAAAACGTGGAACACGTTATCCAAATATGAGAGC 167 |||||||| |||| ||||| ||||||||| ||||| ||| |||||||||| || |||| Sbjct 137 TCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAGC 196 Query 168 TTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAGAGAGTTTATG 227 |||||||||||| ||| | || |||||||||| |||| | ||| |||| ||||| ||| Sbjct 197 TTTGCAAAGAAGCACC-T--TGCTCAAGCAAAAGTAGCAG--AAGCAAAG-GAGTTCATG 250 Query 228 ATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAAACAAGGTT 287 ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 251 GTGGTCATGATGAAGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACACGGTT 310 Query 288 GAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGC---GATGAAGTTGAT 344 |||||||||||||||||||| ||||||||||||||| | |||||| |||||| ||||| Sbjct 311 GAATCATCATGTATAAAACGCGAAGCTAAACTTATTGGCTTAGGCGATGATGAACTTGAT 370 Query 345 ATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAGACAAG 404 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 371 ATATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAAG 430 Query 405 ACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACCCGTACGATCGAACCCACA 464 |||||||| |||||||||||||| | ||||||| ||||||||| | ||||| |||||| Sbjct 431 ACTAGGCTCGTGGTTTGGAACCC--CT-ATTGGGGGCATACCCGTCCAATCGAGCCCACA 487 Query 465 CAT-AACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAACAAGAGC 523 ||| || | | ||| | || ||| | | || | |||||||||||||||| |||||||| Sbjct 488 CATCAA-TTCAACAAACTCGATA-G-CT-AT-T-CGTATGCTCTCGGATACGACAAGAGC 541 Query 524 TAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACTTACTGGATGAGGGTTATGGATG- 582 |||| |||||||||||||||||||| | || ||||| | ||| | || | Sbjct 542 -AGCA---AATCCCACAAAATCTTGAGG---GGTA-TTACT---T----GTT-T-GAAGC 584 Query 583 AGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGATT 642 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 585 CCTTCAAAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGACT 644 Query 643 GG-ACGATAAGTTA-TATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGTTTGC 700 || || |||| | ||| ||| |||||||||||||||||||||||| ||||||||||| Sbjct 645 GGCAC-TTAAG-GACTATTCACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTTGC 702 Query 701 T-ACTGAG-AGATATTCCGAAA-C--------AGACGATTATTTCTTAGTCTGTTTTGAT 749 | | ||| || |||||||||| | |||||||| ||||||||||||||||||| Sbjct 703 TGA-AGAGAAG-TATTCCGAAACCAGAGAAATAGACGATTTTTTCTTAGTCTGTTTTGAT 760 Query 750 TTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTTTGTGTTTGTTAAATCTGAA 809 ||||||||||||||||||||||| | |||| |||||||||||| ||||| | |||||| Sbjct 761 TTCACAAGAGAGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAA 820 Query 810 GATGTTATGTGTGTATCTAATGTTAGAGAAGAGCAGCTTGCGGTTTTATATCAGCCGTGG 869 |||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 821 GATGCTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATATCAGCCGTGG 880 Query 870 GATAAATAAAAGATGGAGATCTGGATTACGTCTACGATTGAGCCCAACGCGGTGTCGTGG 929 |||| || |||||||||||||||| ||||||||| |||||||||||||||||| || ||| Sbjct 881 GATACATTAAAGATGGAGATCTGGGTTACGTCTAAGATTGAGCCCAACGCGGTCTCCTGG 940 Query 930 AACAGCAAGGTGTTCTTATCAGTGAGTATAAGAA-AACTCATTGGCCCTCCGTTTCAGTT 988 ||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||| || Sbjct 941 AACAGCAAGGTGTTCTTATCAGTGAGTTTAA-AACAACTCATTGGCCCTCAGTTTCATTT 999 Query 989 TTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1048 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 TTATTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1059 Query 1049 CTACAAAGATAAGCGCAACATAGCTTACATCATTGGAGACTTTGGAGTCGATGGATCCTT 1108 ||||||||||||||||||||| |||||||||||||||| | ||| | | | |||||| Sbjct 1060 CTACAAAGATAAGCGCAACATGGCTTACATCATTGGAG--T--GGA-T-G--G-ATCCTT 1110 Query 1109 TAAAGAAG-GGATCTCGGAGAATCAGCCTACGCAATGTGTTACCCACTTATGTGCTCTTA 1167 |||||||| |||||| |||||||||| ||| || |||||||||||| |||||||||| Sbjct 1111 TAAAGAAGTGGATCTTGGAGAATCAG---ACGTAAGGTGTTACCCACTCGTGTGCTCTTA 1167 Query 1168 TGTTCCAA 1175 |||||||| Sbjct 1168 TGTTCCAA 1175 > Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 Length=1110 Score = 924 bits (500), Expect = 0.0 Identities = 705/800 (88%), Gaps = 29/800 (4%) Strand=Plus/Plus Query 42 ATGACTAAGATATCCAATCTTCCAAGGGATTTGGCGGAAGAGGTGCTCTGT-AGAATTCC 100 ||||| ||||||||||||||||| || ||||||||||| |||||||||||| || ||||| Sbjct 1 ATGACGAAGATATCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAG-ATTCC 59 Query 101 GTTGACGTCTCTGAGAACTGTTTGATCTTCTTGCAAAACGTGGAACACGTTATCCAAATA 160 |||||| |||||| ||||| | |||| ||||||||| ||||||||| ||||||||||| Sbjct 60 GTTGACATCTCTGCGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATA 119 Query 161 TGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGG-AAAGAG 219 |||||| ||||||||||||||||||||||||||||||||| |||| | ||||| |||||| Sbjct 120 TGAGAGTTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAAGTAGCAG-AAAGGGAAAGAG 178 Query 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAA 279 |||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 179 AGTTTATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATCTTCAAA 238 Query 280 ACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGCGATGAAG 339 |||| |||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| Sbjct 239 ACAATGTTGAATCATCATGTATAAAGCGTGAAGCTGAACTTATTAGCTTAGGTGATGAAG 298 Query 340 TTGATATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAG 399 ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 299 TTGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAG 358 Query 400 ACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACCCGTACGATCGAAC 459 ||||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||| Sbjct 359 ACAAGACTAGGCTCGTGGTTTGGAACCCGTAT--T-GGGGACATACCCGGACGATCGAAC 415 Query 460 CCACACATAACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAACAA 519 ||||||||||| || ||| || |||| ||| ||| ||||||||||||||||||||| Sbjct 416 TCACACATAACTTACAGATAATCGATAG--ATA-TAT--GTATGCTCTCGGATACAACAA 470 Query 520 GAGCTAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACTTACTGG-ATGAGGGTTATG 578 |||| |||| |||||||||||||||||||||| ||||||||||| || || || Sbjct 471 GAGC-AGCA---AATCCCACAAAATCTTGAGGTTCATTACTTACTGGGATCCCAATTTTG 526 Query 579 GATGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCA 638 | ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 527 AA-GAGTTCAAAATCTACGATTTGAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCA 585 Query 639 GATTGGACGATAAGTTATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGTTT 698 || |||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||| Sbjct 586 GACTGGACGATAAGTCATATTAACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTT 645 Query 699 GCTACTGAGA-GATATTCCGAAACA-GA----C-GA---TTATTTCTTAGTCTGTTTTGA 748 |||| ||||| | ||||| |||||| || | || || |||||||||||||||||| Sbjct 646 GCTAATGAGAAG-TATTCTGAAACAAGAAGAACCGACCATTTTTTCTTAGTCTGTTTTGA 704 Query 749 TTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTTTGTGTTTGTTAAATCTGA 808 ||||||||||||||||||||| || |||||| |||||||||||| ||||| | ||||| Sbjct 705 TTTCACAAGAGAGACATTTGGACCGCTTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGA 764 Query 809 AGATGTTATGTGTGTATCTA 828 ||||| |||| ||||||||| Sbjct 765 AGATGCTATGAGTGTATCTA 784 Score = 411 bits (222), Expect = 8e-114 Identities = 290/321 (90%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 858 TATC-AG-CCGTGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGATTGAGCCCA 915 |||| || |||||||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 779 TATCTAGTCCGTGGGATACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCCA 838 Query 916 ACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCC 975 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 839 ACGTGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAAAAAACTCATTGCCC 898 Query 976 CTCCGTTTCAGTTTTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 1035 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CTCAGTTTCAGTTTTACTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 958 Query 1036 TTTTTGATAAAGACTACAAAGATAAGCGCAACATAGCTTACATCATTGGAGACTTTGGAG 1095 ||||||||||| ||||||| ||| ||||| |||||||||||||||||||| | ||| Sbjct 959 TTTTTGATAAATACTACAACGATCGGCGCAGCATAGCTTACATCATTGGAG--T--GGA- 1013 Query 1096 TCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATCAGCCTACGCAATGTGTTACCCAC 1154 | | | |||||| |||| || ||||||||||||||| || ||||||||||||||||||| Sbjct 1014 T-G--G-ATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCAC 1069 Query 1155 TTATGTGCTCTTATGTTCCAA 1175 || |||||||||||||||||| Sbjct 1070 TTGTGTGCTCTTATGTTCCAA 1090 > Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 Length=1329 Score = 555 bits (300), Expect = 4e-157 Identities = 901/1175 (77%), Gaps = 105/1175 (9%) Strand=Plus/Plus Query 42 ATGACTAAGATATCCAATCTTCC-AAGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTCC 100 |||||||||||||| |||||||| || |||||||| ||| |||||||||| ||| |||| Sbjct 1 ATGACTAAGATATCTAATCTTCCTAA-GGATTTGGTGGAGGAGGTGCTCTCTAGGGTTCC 59 Query 101 GTTGACGTCTCTGAGAACTGTTTGATCT-TCTTGCAAAACGTGGAACACGTTATCCAAAT 159 ||| || ||| | |||| | | ||| | ||||||||| |||||||| ||||||||| Sbjct 60 GTTAACATCTTTAAGAAATATCCGAT-TAACTTGCAAAAAGTGGAACATTTTATCCAAAG 118 Query 160 ATGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAGAG 219 ||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||| Sbjct 119 GTGAGAGCTTTGCAAAGAAGCACCTTGGTGATCAAGCAAAAGAAGCAGCAACGGAAAGAG 178 Query 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAA 279 |||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||| | Sbjct 179 AGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGAGTCAATCTTCACA 238 Query 280 ACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGCGATGAAG 339 | | |||| | ||||||||||| | ||||| | |||||||| | |||| ||| |||| Sbjct 239 ATGACGTTG-A--GTCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTAGACGAAGAAG 295 Query 340 TTGATATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAG 399 ||| |||||||||||||||||||| ||||||||||| || || |||| | ||| Sbjct 296 ACGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTG---TT-AT--GCATTATGGAAG 349 Query 400 ACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACC-CGTACGATCGAA 458 | || |||||| | ||||||||||||||| | ||||||| |||||| || ||||| Sbjct 350 ATAACACTAGGATTGTGGTTTGGAACCCG--T-ATTGGGGGCATACCTGGT-GGATCGTG 405 Query 459 CCCACACATAACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAA-C 517 || |||||||| | ||||| ||| | || | |||| ||||||||| |||||||| | Sbjct 406 CCTACACATAATTTCCACAAATT--GGACGT-T--TATACGTATGCTCTTGGATACAAGC 460 Query 518 AAGAGCTAGCAGCT-A-ATC-C--C-ACAAAATCTTGAGGTTTGTT-A-CTTACT-GGAT 568 ||||| |||| | | || | | ||||||||||||| ||| || | || || | | Sbjct 461 -AGAGC-AGCAAATCATGTCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCGCA- 517 Query 569 GAGGGTTATGGATGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGA 628 ||| | ||| |||| ||||||| || | |||||||||||||||| ||||||||| Sbjct 518 -CTTGTT-T---TGAATTCAAAATCTACAATATAAACTCTGATTCATGGAAGGTTCTTGA 572 Query 629 TGTCACTCCAGATTGGACGATAAG-TT-ATATGAACCTTGGCGTGTCTCTCAAGGGAAAT 686 |||| |||||||||||| ||| || || ||| | | |||||||||||||||||||||| Sbjct 573 TGTCTCTCCAGATTGGAAGAT-AGATTCTTAT-AGTCGTGGCGTGTCTCTCAAGGGAAAT 630 Query 687 GCATACTGGTTTGCTACTGAGAGATATTCCGAAACAGACG-ATTA-TTTCTTAGTCTGTT 744 | ||||||||||||| ||||| | | || || | | || |||||||||||||| Sbjct 631 ACGTACTGGTTTGCTA--GAGAG--A---GGCAA-GGAAGCAGTACTTTCTTAGTCTGTT 682 Query 745 TTGATTTCACAAGAGAGACATTTGGGCCTC-TTTTGACTCTTCCGTTTGTGTTTGTTAAA 803 |||||||||||||||||| |||| | | | |||| |||| ||| || | | || | Sbjct 683 TTGATTTCACAAGAGAGAGATTTAGATCACGTTTT-CCTCTGCCGATTCAG-CCG-TATA 739 Query 804 TCTGAAGATGTTATGTGTGTATCTAATGTTAGAGAAGAGCAGCTTGCGGTTTTATATCAG 863 | | |||| || || |||||| |||||||||||||||||| |||||||||| |||| Sbjct 740 T-TTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCAG 798 Query 864 CCG-T-GGGA-TA--A-ATA-AAAGATGGAGATCTGGATTACGTCTACG--A-TTGAGCC 913 || | || || | | | |||||||||||||||| || | ||| | ||||||| Sbjct 799 -CGCTCAAGATTATCAGAGATGGAGATGGAGATCTGGATAAC--C-ACGAAACTTGAGCC 854 Query 914 CAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGG 973 |||||||||||||||||||||||||||||||||| || || | ||| | | || Sbjct 855 CAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTAGCAATG-G-ATA-------T--T-GG 902 Query 974 CCCTCCGTTTCAGTTTT--GTTTGGG--G-A-GTTTCTTCATTGACGAGGAGAAGAAAGT 1027 || || ||||||||| ||| | | | | ||||||| || || |||||||||||||| Sbjct 903 CCTTCAATTTCAGTTTCAAGTTAGAGCTGCAAGTTTCTTTATCGATGAGGAGAAGAAAGT 962 Query 1028 CGCTGTGGTTTTTGATAAAGACTACAAAGATA-AGCG-CAACAT-AGCTTACAT--CATT 1082 | |||||||||||||||||| | ||| || || | | || | | | |||| | || Sbjct 963 TGTTGTGGTTTTTGATAAAGAGAAAAAATATTTAGTGTCCAC-TCA-CA-ACATAGC-TT 1018 Query 1083 GGAGACTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATCAGCCTACGCA 1141 | |||||||| |||||| |||| || ||| |||||| ||| ||| || || | Sbjct 1019 ACAT-CTTTGGAGAGGATGGAACCTTGGAACAAGTGGATCTTGGATTATCTGCAGACA-A 1076 Query 1142 ATGT-GTTACCCACTTATGTGCTCTTATGTTCCAA 1175 || | |||| |||||| |||||| ||||||||||| Sbjct 1077 ATTTTGTTATCCACTTGTGTGCTGTTATGTTCCAA 1111 > Ahg930371 jgi|Araly1|930371|scaffold_302828.1 Length=984 Score = 243 bits (131), Expect = 3e-63 Identities = 364/470 (77%), Gaps = 41/470 (9%) Strand=Plus/Plus Query 731 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTT 790 ||||||| ||||||||||||||||||||||||||||| |||| | |||| |||| ||| | Sbjct 499 TTTCTTACTCTGTTTTGATTTCACAAGAGAGACATTTAGGCCGCGTTTGCCTCTGCCGGT 558 Query 791 TGTGTTTGTTAAATCT-GAAGATGTTATGTGTGT-ATCTAATGTTAGAGAAGAGCAGCTT 848 || || || | ||| |||||| | ||| | | ||||| ||||||||| ||||||||| Sbjct 559 TGAGTC-GT-A--TCTTGAAGATACTCTGT-TATTATCTAGTGTTAGAGATGAGCAGCTT 613 Query 849 GCGGTTTTATATCAGCCG-TGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGAT 907 ||||| |||| ||||| ||| ||| || | |||||||||||||| | || ||| ||| Sbjct 614 GCGGTGTTATTTCAGCATATGG-ATACATTACAGATGGAGATCTGGGTGACAACTAAGAT 672 Query 908 TGAGCCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGT-GAGTATAAGAAAAC 966 |||||||||| |||||||||||| ||||||| | ||||||||||| || ||| ||| ||| Sbjct 673 TGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGA-TATGAGAGAAC 731 Query 967 TCATTGGCCCTC-CGTTTCA-GTTTT-GTTTG-GG--G-A-GTTTCTTCATTGACGAGGA 1018 ||| ||| | | | | | ||||| |||| || | | ||||||||| ||| ||||| Sbjct 732 TCACCGGCATTTAC-TCT-ATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATGAGGA 789 Query 1019 GAAGAAAGTCGCTGTGGTTTTTGATAAAG-ACTACA-A--A-GATAA-GCGCAACATAGC 1072 ||||||||| || |||||||||||||||| | | | | | ||| | |||||| ||| Sbjct 790 GAAGAAAGTTGCAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAATGCAGC 849 Query 1073 TTACATCATTGGAGACTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATC 1131 |||||| ||||||| ||| | | | |||||| ||||||| |||||| |||||||| Sbjct 850 TTACATTGTTGGAGA----GGA-T-G--G-ATCCTTGAAAGAAGTGGATCTTGGAGAATC 900 Query 1132 AGCCTA-CGCAA-TGTGTTACCCACTTATGTGCTCTTATGTTCCAACTTC 1179 || | | || | | ||| |||| |||||||||||||||||| ||| Sbjct 901 T-CCAAACAAAAATCTCCGACC-ACTTGTGTGCTCTTATGTTCCAAGTTC 948 > Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 Length=981 Score = 178 bits (96), Expect = 9e-44 Identities = 433/582 (74%), Gaps = 77/582 (13%) Strand=Plus/Plus Query 164 GAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCT---GCAAAGG-AAAGAG 219 |||||||||||||||| ||| | || |||||||| | ||||| ||||||| |||| | Sbjct 27 GAGCTTTGCAAAGAAGCACC-T--TGCTCAAGCAAGAGTAGCTGCAGCAAAGGAAAAG-G 82 Query 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAAT-TGATGAGA-GTCAATCTTCA 277 |||||||| ||||| |||||||| |||||||||||| || ||||| | || |||||||| Sbjct 83 AGTTTATGGTGGTCATGATGATGGATTTTAGGGTTT-ATCTGATG-CACGTGAATCTTCA 140 Query 278 --A-AACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTA--TTAGTTTA-G- 330 | |||||||||||| | ||| || |||||| ||| || ||||| || | | Sbjct 141 CTACGACAAGGTTGAAT--T-ATGCATGAAACGTCAAGGTACACTTATTTTCCCCGACGC 197 Query 331 -GC-GATGAAGT-TGATATATC-TCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATC 386 | ||| || | | || || | |||||||||||||||| ||||||||||||||| |||| Sbjct 198 CTCAGATCAAATCT-ATGTA-CGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC 255 Query 387 AGCATCACCAAAGACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTG-GGGACATAC 445 | | |||||||| ||||||| || |||| |||||| | |||| ||| || || Sbjct 256 --C-T---GAAAGACAACCCTAGGCTCGTTGTTTTTAACCCG--T-ATTGTGGG-CA-AC 304 Query 446 C-C-GTACGATCGAACCCACACATAACTGCCACATATTCA-ATAGGTATAATATAT-GTA 501 | | || ||||||| ||||| |||| | | || | || || || ||| | || Sbjct 305 CACGGT-GGATCGAAGCCACATATAA-T---A-AT-CAGAGATTGGAATTTTAT-TCGTT 356 Query 502 TGCTCTCGGATACAACAAGAGCTAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACT- 560 | |||| |||| |||| ||| | || | ||||||||||||||||||| ||| || | Sbjct 357 TTCTCTGGGAT---ACAATAGC-AACACCAAATCCCACAAAATCTTGAGATTTATT-TTA 411 Query 561 TA-C-TGG--------ATGAGGGTTATGGATGAGTTCATAATCTACGATTTTAACTCTGA 610 || | ||| | || || ||| |||||||| ||||||||| ||||||||||| Sbjct 412 TATCATGGTCTTTTCTCTTTGGCTT-TGGCTGAGTTCAAAATCTACGACTTTAACTCTGA 470 Query 611 TTCATGGAGGGTTCTTGATGTCACTCCAGATTGG-ACGATA-AGTTA-TAT-GAACCTTG 666 ||||||||||||||||||||| |||| ||| ||| || ||| | || ||| | | || Sbjct 471 TTCATGGAGGGTTCTTGATGTTACTCGAGACTGGGAC-ATAGA-TTGGTATCG--CGGTG 526 Query 667 GCGTGTCTCTCAAGGGAAATGCATACTGGTTTGCTACTGAGA 708 | || |||||||||||||||||||| | ||||||| ||||| Sbjct 527 GTGTCTCTCTCAAGGGAAATGCATATTTCTTTGCTAATGAGA 568 > Ahg925199 jgi|Araly1|925199|scaffold_200760.1 Length=1195 Score = 102 bits (55), Expect = 6e-21 Identities = 307/423 (73%), Gaps = 39/423 (9%) Strand=Plus/Plus Query 41 AATGACTAAGATATCCAATCTTCCA-AGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTC 99 ||||| || || |||||||||||| | || |||| |||||| | |||| |||| ||| Sbjct 20 AATGAAGAACATGTCCAATCTTCCACA-AGACTTGGTAGAAGAGATACTCTCTAGAGTTC 78 Query 100 CGTTGACGTCTCTGAGAACTG-TTTGATCTTCTTGCAAAACGTGGAACACGT-TATCCAA 157 ||||||| ||| ||||| | | | ||||| |||| |||| ||||||||| | ||| || Sbjct 79 CGTTGACATCTTTGAGAGC-GATGCGATCTACTTGTAAAAAGTGGAACAC-TCTATTTAA 136 Query 158 ATATGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAG 217 | ||||||| ||| |||||||| || ||| | || | | || | |||||||| Sbjct 137 AGATGAGAGGTTTACAAAGAAGCACATTGCCCAAGTTGCTGTAGAAACTACTAAGGAAAG 196 Query 218 AGAGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCA 277 |||||| || | || || || | || ||||||| ||| || ||||||||||||| || Sbjct 197 GGAGTTTGTGGCGATCATGTTGCTAAACTTTAGGGCTTATTTAATGAGAGTCAATC-TCC 255 Query 278 AAACAAGGT--T--GAA-TC--AT-CATGTA-TAAAACGTGA-AGCTAAACTTATTAGTT 327 || || | | || || || ||| || |||| | | | || |||||||||||| Sbjct 256 AAGGAA-TTCATAACAACTCTAATCCAT-TATTAAAGCCT-ATAGGTAAACTTATTAGCC 312 Query 328 TAG-----GC-GATGAAGTTGATATATCTCAAGTCTTTC-ACTGC-AACGGTTTATTGTT 379 ||| | ||| |||| ||||||||| || |||| | ||| || ||||||||||| Sbjct 313 TAGACACTTCAGATCAAGTCAATATATCTCGGGTATTTCGA-TGCGAA-GGTTTATTGTT 370 Query 380 ATTCATCAGCATCACCAAAGACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGG 439 || || | || || |||||| | ||||||||||| |||||||| |||||| || ||| Sbjct 371 ATGCA-C--CA-CA--AAAGACTACACTAGGCTAGTAGTTTGGAATCCGTAT--TT-GGG 421 Query 440 ACA 442 ||| Sbjct 422 ACA 424 > Ahg314206 jgi|Araly1|314206|fgenesh1_pm.C_scaffold_1002986 Length=957 Score = 95.3 bits (51), Expect = 9e-19 Identities = 151/195 (77%), Gaps = 23/195 (12%) Strand=Plus/Plus Query 581 TGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGA 640 |||||| | |||||||||| ||||||||||||||||||||||||||||| ||| |||| | Sbjct 390 TGAGTTTAAAATCTACGATATTAACTCTGATTCATGGAGGGTTCTTGATATCAGTCCATA 449 Query 641 TTGG-ACGATA-AGT-T-ATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGT 696 || | |||| | | | ||| | | | ||||| ||| ||||| ||||| | ||||||| Sbjct 450 CTGTCA-GATACACTCTGATA-GT-CGT-GGCGTCTCTGTCAAGAGAAATACGTACTGGT 505 Query 697 TTGCTACTGAGAGATATTCCGAAACAGACGATTATTTCTTAGTCTGTTTTGATTTCACAA 756 ||| | | ||| | | | | | |||| || | ||||||||||||| ||||||||| Sbjct 506 TTG-T--T-AGA-A-A--CAGG--C-GACG-TT-T--CTTAGTCTGTTTTAATTTCACAA 550 Query 757 GAGAGACATTTGGGC 771 |||||| ||||||| Sbjct 551 GAGAGAGTTTTGGGC 565 > Ahg925743 jgi|Araly1|925743|scaffold_201304.1 Length=1229 Score = 84.2 bits (45), Expect = 2e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 998 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1048 |||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 975 GAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGAAAAAGA 1025 > Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 Length=1608 Score = 84.2 bits (45), Expect = 2e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 998 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGA 1048 |||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1371 GAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGAAAAAGA 1421 > Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469 Length=987 Score = 84.2 bits (45), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 3/62 (5%) Strand=Plus/Plus Query 1001 TTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACAA-AGATA 1059 ||||||| ||||||||||||||||||||||||||||||||||||| ||| | || ||||| Sbjct 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC-A-AAGAGATA 897 Query 1060 AG 1061 || Sbjct 898 AG 899 > Ahg929032 jgi|Araly1|929032|scaffold_301489.1 Length=1468 Score = 71.3 bits (38), Expect = 2e-11 Identities = 42/44 (95%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 996 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTT 1039 |||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1353 GGGAGTTTCTTCATTGACGAGGAGAAGAAAATTGCTGTGGTTTT 1396 > Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 Length=2011 Score = 71.3 bits (38), Expect = 2e-11 Identities = 44/47 (94%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 998 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATA 1044 ||| |||||||||||||||||||||||||||| |||| ||||||||| Sbjct 988 GAGCTTCTTCATTGACGAGGAGAAGAAAGTCGTTGTGCTTTTTGATA 1034 Score = 67.6 bits (36), Expect = 2e-10 Identities = 46/51 (90%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 594 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGATTGG 644 |||||||| | ||||||||||||||||||||||||||||| ||| || ||| Sbjct 557 TACGATTTCAGCTCTGATTCATGGAGGGTTCTTGATGTCAATCCTGACTGG 607 > Ahg929886 jgi|Araly1|929886|scaffold_302343.1 Length=742 Score = 67.6 bits (36), Expect = 2e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1037 |||||||||||||||||||||||||||||||| |||||| Sbjct 403 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441 > Ahg929561 jgi|Araly1|929561|scaffold_302018.1 Length=1027 Score = 63.9 bits (34), Expect = 3e-09 Identities = 38/40 (95%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 591 ATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 630 ||||| || ||||||||||||||||||||||||||||||| Sbjct 546 ATCTATGAGTTTAACTCTGATTCATGGAGGGTTCTTGATG 585 > Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 Length=1546 Score = 63.9 bits (34), Expect = 3e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 594 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 630 |||||||| |||||||||||||||||||||||||||| Sbjct 924 TACGATTTGAACTCTGATTCATGGAGGGTTCTTGATG 960 > Ahg930411 jgi|Araly1|930411|scaffold_302868.1 Length=1141 Score = 62.1 bits (33), Expect = 9e-09 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand=Plus/Plus Query 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGT-GGTTTTTGAT 1043 |||||||||||||||||||||||||||||||| | |||||| ||| Sbjct 840 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTT-GAT 884 > Ahg929147 jgi|Araly1|929147|scaffold_301604.1 Length=1290 Score = 62.1 bits (33), Expect = 9e-09 Identities = 37/39 (95%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1037 ||||||||||||||||||||||||||||| |||| |||| Sbjct 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGCGGTT 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44870673309 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5