BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25230.2
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480033 jgi|Araly1|480033|fgenesh2_kg.3__2734__AT3G25230.1 2712 0.0
Ahg949042 jgi|Araly1|949042|scaffold_800929.1 625 4e-178
> Ahg480033 jgi|Araly1|480033|fgenesh2_kg.3__2734__AT3G25230.1
Length=1901
Score = 2712 bits (1468), Expect = 0.0
Identities = 1722/1840 (94%), Gaps = 36/1840 (2%)
Strand=Plus/Plus
Query 118 CGACGACGACGACATGGATTTCGGTGACGGCGCCTCGTTTCTTAAAGTCGGTGAAGAGAA 177
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 33 CGACGACGACGACATGGATTTCGGTGACGCCGCATCGTTTCTTAAAGTCGGTGAAGAGAA 92
Query 178 AGAGATCCAACAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGATATGAAACTCC 237
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 93 AGAGATCCAACAAGGTTTGAAGAAGAAGCTTGTTAAAGAAGGTGAAGGATATGAGACTCC 152
Query 238 TGAGAATGGCGATGAAGTTGAAGTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTT 297
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 153 TGAGAATGGCGATGAAGTTGAAGTGCATTACACTGGGACTTTGCTTGATGGGACGAAGTT 212
Query 298 TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGGTCAAGTTAT 357
|||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 213 TGATTCGAGTCGTGATAGAGGAACACCTTTTAAATTCACTCTTGGACAAGGTCAGGTTAT 272
Query 358 TAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGAAAACGCTGTTTTCACTAT 417
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 273 TAAAGGATGGGATATTGGTATTAAGACAATGAAGAAAGGTGAAAACGCTGTATTCACTAT 332
Query 418 ACCTGCGGAGCTAGCATATGGGGAATCTGGTTCCCCGCCAACTATTCCTGCGAATGCTAC 477
||| |||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 333 TCCTTCGGAGCTAGCTTATGGGGAATCTGGTTCGCCGCCGACAATTCCTGCGAATGCCAC 392
Query 478 GCTTCAGTTTGATGTGGAGTTGCTTAAATGGGACAGTGTGAAGGATATATGTAAAGATGG 537
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 393 GCTTCAGTTTGATGTGGAGTTGCTTACATGGGTTAGTGTGAAGGATATATGTAAAGATGG 452
Query 538 TGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 453 TGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGATCTTGA 512
Query 598 TGAAGTTCTTGTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGA 657
|||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 513 TGAAGTTCTTGTTAAGTTCGAGGCTAAACTTGAGGATGGCACGGTTGTTGGGAAATCTGA 572
Query 658 TGGTGTGGAGTTCACTGTTAAAGATGGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAA 717
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGGTGTAGAGTTCACTGTTAAAGATGGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAA 632
Query 718 AACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATATGGTTTTGGGGA 777
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 633 AACCATGAAAAAGGGTGAAAAGGTCCTTTTGACAGTTAAACCACAATATGGTTTTGGGGA 692
Query 778 GAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTCCTCCTAATGCGACGCTCGAGAT 837
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 693 GAAGGGCAAGCCAGCCTCTGCTGGTGAAGGTGCGGTTCCTCCTAATGCGACACTTGAGAT 752
Query 838 CAATTTGGAGTTAGTTTCGTGGAAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGT 897
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 753 CAATCTGGAGTTAGTTTCATGGAAAACAGTTTCAGAAGTAACTGATGATAACAAGGTTAT 812
Query 898 GAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAA 957
||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 813 GAAGAAAATCTTGAAGGAAGGGGAAGGATATGAGCGTCCTAACGAGGGGACAGTTGTGAA 872
Query 958 AGTGAAATTGATAGGGAAACTTCAAGATGGTACTGTATTTTTGAAGAAAGGTCATGGTGA 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 873 AGTGAAATTGATAGGGAAACTTCAAGATGGTACTGTATTTTTGAAGAAAGGTCACGGTGA 932
Query 1018 GAATGAGGAACCGTTTGAGTTCAAAACAGATGAAGAGCAAGTTGTCGATGGACTTGATAG 1077
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 933 GAATGAAGAACCGTTTGAGTTCAAAACAGATGAAGAGCAAGTGGTCGATGGACTTGATAG 992
Query 1078 AGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 993 AGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCCGAGTATGC 1052
Query 1138 CTTTGGTTCTAATGAGTCACAACAGGAATTGGCTGTGGTGCCGCCAAACTCAACTGTTAC 1197
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1053 CTTTGGTGCTAATGAGTCACAACAGGAGTTGGCTGTGGTGCCGCCAAACTCAACCGTTAC 1112
Query 1198 TTATGAGGTTGACCTATTGACTTTCGACAAGGAAAGGGAATCGTGGGACATGAACACTGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TTATGAGGTTGACCTATTGACTTTCGACAAGGAAAGGGAATCGTGGGACATGAACACTGA 1172
Query 1258 GGAGAAGATTGAAGCTGCTAGTAAGAAGAAGGAAGAAGGAAATTCCAAGTTTAAAGGAGG 1317
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1173 GGAGAAGATAGAAGCTGCTAGTAAGAAGAAGGAAGAAGGAAATTCCAAGTTTAAAGCAGG 1232
Query 1318 CAAATATTCCCTGGCTTCCAAGAGATATGAGAAGGCTGTCAAATTCATTGAATACGACAC 1377
||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1233 CAAATATGCGCTGGCTTCCAAGAGATACGAGAAGGCTGTCAAATTCATTGAATACGACAC 1292
Query 1378 ATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 ATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAA 1352
Query 1438 CGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCCGAAAAACTATGCACAAA 1497
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 1353 CGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCTGAAAAATTGTGCACAAA 1412
Query 1498 GGTGTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTATACCGGAGAGCGCAAGCGTACAT 1557
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1413 GGTGTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTATACAGGAGAGCGCAAGCGTACAT 1472
Query 1558 GGAGTTGTCTGATTTAGACTTGGCCGAGTTTGATGTCAAGAAGGCCCTTGAAATCGATCC 1617
|||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1473 GGAGATGGCTGATTTAGACTTGGCTGAGTTTGATGTCAAGAAGGCCCTTGAAATTGATCC 1532
Query 1618 CAACAACAGGGAAGTGAAGCTAGAGCAGAAAAGGTTGAAGGAGAAAATGAAGGAATTCAA 1677
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1533 AAACAACAGGGAAGTGAAGCTGGAGCAGAGAAGGTTGAAGGAGAAAATGAAGGAATTCAA 1592
Query 1678 TAAAAAGGAAGCCAAATTTTATGGAAACATGTTTGCGAAA----CT--AAG-A-ATA--- 1726
||||||||||||||||||||||||||||||||||||||| || ||| | |||
Sbjct 1593 CAAAAAGGAAGCCAAATTTTATGGAAACATGTTTGCGAAATTAACTGTAAGTATATATCT 1652
Query 1727 --A-------TCA--AAA-GATGGAGAGGCAATGAGCACCTGAGGTCTTGAAAACGTTGC 1774
| ||| ||| |||||||| |||||||||||||||| ||||||||||||| |
Sbjct 1653 CTAAAAGGAATCATCAAAAGATGGAGAAGCAATGAGCACCTGAG-TCTTGAAAACGTTCC 1711
Query 1775 AAGAACTCTGCAtttttcattttcta-ct-cttttggtttgttgcaatgtttt-ct-agt 1830
|||||||||||||||| || ||||| || ||||||||||||||||||||||| || |||
Sbjct 1712 AAGAACTCTGCATTTT-CAGTTTCTTGCTTCTTTTGGTTTGTTGCAATGTTTTTCTTAGT 1770
Query 1831 ttttcAACCTGAGCGTTAGTGAGACACTAAGACTTATAAAACAGTGAGAGATTA-TCCCA 1889
||||| ||||||| ||| ||||| | ||| | || | |||| || ||||| || ||
Sbjct 1771 TTTTCGTCCTGAGCTTTAATGAGAGA-TAACA-TTGGATTTCAGTTAGTGATTAATCGCA 1828
Query 1890 ATGTGTTGCTTTTTTCGTCT-GATTGTTGGTAGAAA-CTT 1927
||||||| ||||||||||| | ||||||||||||| |||
Sbjct 1829 -TGTGTTGTTTTTTTCGTCTAG-TTGTTGGTAGAAAACTT 1866
Score = 69.4 bits (37), Expect = 9e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1954 AACTTTCCAGATTAATTTGAGTTCTTAATATGATATCGAG 1993
||||||| ||||||||||||||||||||||||||||||||
Sbjct 1862 AACTTTCAAGATTAATTTGAGTTCTTAATATGATATCGAG 1901
> Ahg949042 jgi|Araly1|949042|scaffold_800929.1
Length=1091
Score = 625 bits (338), Expect = 4e-178
Identities = 389/414 (94%), Gaps = 2/414 (0%)
Strand=Plus/Plus
Query 1123 AGACCCTGAGTATGCCTTTGGTTCTAATGAGTCACAACAGGAATTGGCTGTGGTGCCGCC 1182
||| || ||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 384 AGAACCAGAGTATGCCTTTGGTTCTACTGTGTCACGACAGGAATTGGCTGTGGTGCCGCC 443
Query 1183 AAACTCAACTGTTACTTATGAGGTTGACCTAT-TGACTTTCGACAAGGAAAGGGAATCGT 1241
||||||||| |||| ||||||||||||||| | |||||||||| |||||||| |||| ||
Sbjct 444 AAACTCAACCGTTAATTATGAGGTTGACCT-TGTGACTTTCGAAAAGGAAAGAGAATTGT 502
Query 1242 GGGACATGAACACTGAGGAGAAGATTGAAGCTGCTAGTAAGAAGAAGGAAGAAGGAAATT 1301
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 503 GGGACATGAACACTGAGGAGAAGATAGAAGCTGCTGGTAAGAAGAAGGAAGAAGGAAATG 562
Query 1302 CCAAGTTTAAAGGAGGCAAATATTCCCTGGCTTCCAAGAGATATGAGAAGGCTGTCAAAT 1361
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 563 CCAAGTTTAAAGCAGGCAAATATGCCCTGGCTTCCAAGAGATATGAGAAGGCTGTCAAAT 622
Query 1362 TCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGG 1421
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCATTGAATATGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGG 682
Query 1422 TGGCATGCAATCTAAACGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCCG 1481
|||| ||||||||||| |||| |||||||||||| || |||||||||||||||||||| |
Sbjct 683 TGGCGTGCAATCTAAAGGATGTAGCCTGCAAACTGAAGTTGAAAGATTACAAGCAGGCTG 742
Query 1482 AAAAACTATGCACAAAGGTGTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTAT 1535
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 743 AAAAACTATGCACAAAGGTCTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTAT 796
Score = 285 bits (154), Expect = 9e-76
Identities = 217/247 (88%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 810 CGGTTCCTCCTAA-TGCGACGCTCGAGATCAATTTGGAGTTAGTTTCGTGGAAAACAGTG 868
|||||||||| || ||| ||||| | ||||||| ||||||||||||| |||||||||||
Sbjct 143 CGGTTCCTCC-AAGTGCAACGCTTGTGATCAATCTGGAGTTAGTTTCTTGGAAAACAGTT 201
Query 869 TCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATAT 928
||||||||||||||||||||||||||| |||| ||| | |||||||||||| | ||||||
Sbjct 202 TCAGAAGTAACTGATGATAACAAGGTTATGAAAAAAATTTTGAAGGAAGGGAAAGGATAT 261
Query 929 GAGCGTCCTAACGAGGGGGCAGTTGTGAAAGTGAAATTGATAGGGAA-ACTTCAAGATGG 987
|||||||||||| |||| ||||||||||||||||||||||||| || ||||||| ||||
Sbjct 262 GAGCGTCCTAACAAGGGTTCAGTTGTGAAAGTGAAATTGATAGG-AACACTTCAAAATGG 320
Query 988 TACTGTATTTTTGAAGAAAGGTCATGGTGAGAAT-GAGGAACCGTTTGAGTTCAAAACAG 1046
||||||||| |||||| ||||||||| || || |||| ||| ||| ||||||||||||
Sbjct 321 TACTGTATTCCTGAAGATAGGTCATGGAGA-AAGCGAGGGACCCTTTAAGTTCAAAACAG 379
Query 1047 ATGAAGA 1053
|||||||
Sbjct 380 ATGAAGA 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5