BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25240.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930661 jgi|Araly1|930661|scaffold_303118.1 1092 0.0
Ahg949406 jgi|Araly1|949406|scaffold_801293.1 475 2e-133
> Ahg930661 jgi|Araly1|930661|scaffold_303118.1
Length=889
Score = 1092 bits (591), Expect = 0.0
Identities = 764/849 (90%), Gaps = 6/849 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATTTTCTCCAGAACCAAACGTGTCACTGATCCACTTGACGACGACGCGAAGGCT 60
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 21 ATGGCGATTTTCTCAAGAACCAAACGTGTCACTGACCCACTTGACGACGACGCCAAGGCT 80
Query 61 CGGATCTTGAGCAGCCACAGTTACATCCTAGACCAAGATTCTCCTCGACTCTGCGAGCTC 120
|||||||| ||||||||| | | ||||||||||||||| ||||||||||||| ||||||
Sbjct 81 CGGATCTTCAGCAGCCACGGCTGCATCCTAGACCAAGACTCTCCTCGACTCTACGAGCTT 140
Query 121 GTACACGGGTTTCTT-GAGGATGGTCCTGAAGAGTCATTCTACGACTCTGACCCCGACCT 179
|||||||||||| || ||||||||||| ||||| ||||||||||||||||| || | ||
Sbjct 141 GTACACGGGTTT-TTCGAGGATGGTCCCGAAGAAACATTCTACGACTCTGACTCCAAACT 199
Query 180 GTCTGAGACTTCT-TCAGCTGAACATTCTGGTGAAGCTAGTGTGGAGATCGTGAGAATGG 238
|||||||| |||| | || |||| | | | |||| ||||| ||||||| |||| |||
Sbjct 200 GTCTGAGAATTCTGT-AGTTGAATGTCCCAGCGAAGATAGTGAGGAGATCCTGAGGATGA 258
Query 239 CGGTGAGCTTCTCCGATTCCGATCCTTACCGGAATCTATTGCTAGCTCACGTTTTGAGAG 298
| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 259 CAGTGAGCTTATCTGATTCCGATCCTTACCAGAATCTATTGCTAGCTCACGTTTTGAGAG 318
Query 299 CCGTGGAGGTATATTCCGGTTTTAGGTCAAGGAACAAAACTGTTTTCCGGGATAAGGTAG 358
| ||||||| ||| |||||||||||||||||||| ||| |||||||| |||| |||||||
Sbjct 319 CGGTGGAGGCATACTCCGGTTTTAGGTCAAGGAATAAATCTGTTTTCGGGGACAAGGTAG 378
Query 359 CTTCGTTTCTGCGAGAGCTTGGTC-ACGACGCCGCGGTTTGTGTATCAAAATGGACCTCT 417
||||||||| |||||||| || | || |||||||||||||||||||||||||||||||
Sbjct 379 TTTCGTTTCTACGAGAGCTCGG-CTACAACGCCGCGGTTTGTGTATCAAAATGGACCTCA 437
Query 418 TCATCCAAACTCATCGCTGGGAGTTACCATTTCATTGACGTCGTTCACAAGCCGTCAGAT 477
|| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 438 TCGTCCAAACTCATCGCCGGGAGTTACCATTTCATTGACGTCGTTTACAAGAAGTCAGAT 497
Query 478 AATGATCAGAAGGCCGTCCGTTACTTGGTTGATCTAGACTTTGCTTCGGAGTTCGAGATC 537
|||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 498 AATGATCAGACGGCCGTCCGTTACTTCGTTGATCTCGACTTTGCTTCAGAGTTCGAGATC 557
Query 538 GCAAGGCCAACGCGCGAATACACGCGTGGGCTGCAGCTGCTGCCTAACGTTTTCGTAGGA 597
||||||||||| |||||||||||||||| | ||||| |||||||||||||||| || |||
Sbjct 558 GCAAGGCCAACACGCGAATACACGCGTGTGTTGCAGTTGCTGCCTAACGTTTTTGTGGGA 617
Query 598 AATGAAGAGAATCTAAGGACGATCGTGAGAGAGTCATGCGACGCGGCGAAGCGATCAATG 657
|| ||||||||||| ||||||||||||||||||||||| ||||| |||||| | || ||
Sbjct 618 AAAGAAGAGAATCTGAGGACGATCGTGAGAGAGTCATGTGACGCAGCGAAGAGGTCGTTG 677
Query 658 AAGAGCCGTGGCTTGTCTCTTCCACCGTGGCGGAGAAGCTCTTACTTACAGCATAAGTGG 717
|||||||||||||||||||| ||||||||||||||||||||||| || || || ||||||
Sbjct 678 AAGAGCCGTGGCTTGTCTCTCCCACCGTGGCGGAGAAGCTCTTATTTGCAACACAAGTGG 737
Query 718 TTTGGTCCGTACAAAAGAAAGGTGGGATCTAGTTTGGGAGTGAAGCCGTTGAATAGTGAC 777
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TTTAGTCCGTATAAAAGAAAGGTGGGATCTAGTTTGGGAGTGAAGCCGTTGAATAGTGAC 797
Query 778 GCCGTTAGTTGCCGATCTTTAGGGTTTGATGACGGCGCCGTCAATACTCGTTTGTTCATC 837
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 798 GCCGTTAGCTGCCGCTCTTTAGGGTATGATGACGGCGCCGTCAATACTCGTTTGTTCATT 857
Query 838 AGGGCATGA 846
|||||||||
Sbjct 858 AGGGCATGA 866
> Ahg949406 jgi|Araly1|949406|scaffold_801293.1
Length=457
Score = 475 bits (257), Expect = 2e-133
Identities = 308/333 (92%), Gaps = 1/333 (0%)
Strand=Plus/Plus
Query 515 ACTTTGCTTCGGAGTTCGAGATCGCAAGGCCAACGCGCGAATACACGCGTGGGCTGC-AG 573
|||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||| ||
Sbjct 102 ACTTTGCTTCGGAGTTCGAGATCGCAAGGCCAACACGCGAATACACACGTGTGTTGCAAG 161
Query 574 CTGCTGCCTAACGTTTTCGTAGGAAATGAAGAGAATCTAAGGACGATCGTGAGAGAGTCA 633
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 162 TTGCTGCCTAACGTTTTCGTAGGAAAAGAAGAGAATCTGAGGACGATCGTGAGAGAGTCA 221
Query 634 TGCGACGCGGCGAAGCGATCAATGAAGAGCCGTGGCTTGTCTCTTCCACCGTGGCGGAGA 693
|| ||||| |||||| | || |||||||||||||||||||||| |||||||||||||||
Sbjct 222 TGTGACGCAGCGAAGAGGTCGTTGAAGAGCCGTGGCTTGTCTCTCCCACCGTGGCGGAGA 281
Query 694 AGCTCTTACTTACAGCATAAGTGGTTTGGTCCGTACAAAAGAAAGGTGGGATCTAGTTTG 753
|||||||| || || || ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 282 AGCTCTTATTTGCAACACAAGTGGTTTAGTCCGTATAAAAGAAAGGTGGGATCTAGTTTG 341
Query 754 GGAGTGAAGCCGTTGAATAGTGACGCCGTTAGTTGCCGATCTTTAGGGTTTGATGACGGC 813
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 342 GGAGTGAAGCCGTTGAATAGTGACGCCGTTAGCTGCCGCTCTTTAGGGTATGATGACGGC 401
Query 814 GCCGTCAATACTCGTTTGTTCATCAGGGCATGA 846
||||||||||||||||||||||| |||||||||
Sbjct 402 GCCGTCAATACTCGTTTGTTCATTAGGGCATGA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5