BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25250.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319217 jgi|Araly1|319217|fgenesh1_pm.C_scaffold_3002233 1851 0.0
Ahg474232 jgi|Araly1|474232|fgenesh2_kg.1__4186__AT1G51170.1 91.6 1e-17
> Ahg319217 jgi|Araly1|319217|fgenesh1_pm.C_scaffold_3002233
Length=1272
Score = 1851 bits (1002), Expect = 0.0
Identities = 1187/1276 (93%), Gaps = 14/1276 (1%)
Strand=Plus/Plus
Query 64 ATGCTAGAGGGAGATGAGAAACAGAGCCGAGCTCTGGATTTCAATCGACTCGAGGTTTTG 123
|||| ||||| ||| ||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1 ATGCGAGAGGAAGACCAGAAACAGAGCCGGGCTCTAGATTTTAATCGACTCGAGGTTTTG 60
Query 124 TCATTACTAGGTCGTGGAGCTAAAGGAGTTGTGTTTCTTGTCCGCGACGACGACGCTAAA 183
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTACTAGGTCGTGGTGCTAAAGGAGTTGTGTTTCTTGTCCGCGACGACGACGCTAAG 120
Query 184 TTGCTTGCTTTAAAAGTTATACTTAAGGAAGCCAT--CG-AGAAGAAAAAGAAGGGTAGA 240
||||||||||| ||||||||||||||||||||||| | ||||||||||||||| || |
Sbjct 121 TTGCTTGCTTTGAAAGTTATACTTAAGGAAGCCATAGAGAAGAAGAAAAAGAAGGCTAAA 180
Query 241 GAAAGTGAAGATGATGAGTATAAACGCGTGAGTTTCGAGCAAGGAGTATTAAGCAGATTC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAGTGAAGAAGATGAGTATAAACGCGTGAGTTTCGAGCAAGGAGTATTAAGCAGATTC 240
Query 301 GACCATCCTCTCTTTCCGTCTCTTCACGGTGTTTTAGCTACCGATAAAGTCATCGGTTAT 360
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GACCATCCTCTTTTTCCGTCTCTTCACGGCGTTTTAGCTACCGATAAAGTCATCGGTTAT 300
Query 361 GCGATCGATTATTGTCCGGGACAGAATCTCAATTCTTTGAGGAAAATGCAATCGGAAAGT 420
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 301 GCCATCGATTATTGTCCGGGACAAAATCTCAATTCTTTGAGGAAAATGCAATCGGAAAAT 360
Query 421 ATGTTTTCCGACGAGATTATCAGATTTTACGCGGCGGAGCTTGTATTAGCACTTGACTAT 480
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 361 ATGTTTTCCGACGACATTATCAGATTTTACGCGGCGGAGCTTGTACTAGCACTTGATTAT 420
Query 481 TTACATAATCAAGGAATTGTGTATAGAGATTTGAAGCCAGACAATGTGATGATCCAAGAA 540
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTGCATAATCAAGGAATTGTGTACAGAGATTTGAAGCCAGATAATGTGATGATCCAAGAA 480
Query 541 AATGGACATTTAATGCTTATAGATTTCGATCTTTCTACAAATCTAGCTCCAAGAACGCCG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 AATGGACATTTAATGCTTATAGATTTCGATCTTTCTACAAATCTAGCTCCAAGAACACCG 540
Query 601 CAACCGTCACCGTCACTGTCTAAACCATCGCCGACGATGAAGAGAAAGAAACGTCTCTTC 660
|||||||| ||||||| ||||||||| |||||| | | || |||||||||||||||||||
Sbjct 541 CAACCGTCGCCGTCACCGTCTAAACCGTCGCCGGCAACGACGAGAAAGAAACGTCTCTTC 600
Query 661 CGCTTCACCAGTTTCTGCAACTCAGGAATCTCGCCGCAAGAATCTATCTCGGTTCACTCA 720
|||||| ||||||| || |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 601 CGCTTCTCCAGTTTTTGTAACTCAGGAATCTCGCCGCAAGAATCGATCTCGATTCACTCA 660
Query 721 TCATCTACATTGGCCGTGTCAGATTCTTCAGGTGAGAAGTCAAATTCTTTCGTCGGAACA 780
||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 661 TCATCTACATTAGCCGTGTCAGATTCATCAGGAGAAAAGTCGAATTCTTTCGTCGGAACA 720
Query 781 GAGGAATACGTTGCGCCGGAGGTTATAAGCGGGGACGGTCACGATTTTGCCGTCGATTGG 840
||||||||||| ||||||||||| || | ||| |||||||||||||| ||||| ||||||
Sbjct 721 GAGGAATACGTAGCGCCGGAGGTAATCACCGGAGACGGTCACGATTTCGCCGTTGATTGG 780
Query 841 TGGTCGTTAGGGGTTGTTTTATATGAGATGTTGTATGGAGCGACGCCGTTTAGAGGATCG 900
|||||||||||||||||| |||| ||||||||||||||| |||| |||||||| ||||||
Sbjct 781 TGGTCGTTAGGGGTTGTTCTATACGAGATGTTGTATGGAACGACACCGTTTAGGGGATCG 840
Query 901 AACCGGAAAGAGACATTTTACCGGATTTTATCTAAACCGCCGAATCTAACTGGTGAAACG 960
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 841 AACCGGAAAGAGACGTTTTACCGGATTTTATCTAAACCGCCGAATCTTACCGGTGAAACG 900
Query 961 ACGTCGTTGCGTGATTTGATTAGAAGATTGTTGGAGAAAGATCCTAGCCGTAGGATCAAC 1020
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 ACGTCGTTGAGGGATTTGATTAGAAGATTGTTGGAGAAAGATCCTAGCCGTAGGATTAAC 960
Query 1021 GTTGAGGAAATCAAGGGTCATGATTTCTTCAGAGGAGTAGATTGGGAAAAGGTGATTTTG 1080
|||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 961 GTTGAGGAAATCAAAGGTCACGATTTCTTCAAAGGAGTAGATTGGGAGAAGGTGATTTTG 1020
Query 1081 GTTTCTAGACCGCCGTATATCCCGGCGCCGGACGACGGTGGTGATAAGGG-AACCGATGT 1139
|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1021 GTTTCTAGACCGCCGTATATTCCGGCGCCGGACGACGGTGGTGATAAGGGTAAA-GATGT 1079
Query 1140 AAATACGAAGATGGATGTGGAGAATATCGTCCAAGAGATTTTTGCTGCAAGACAAGAACG 1199
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 AAATACGAAAATGGATGTGGAGAATATCGTCCAAGAGATTTTTGCTGCAAGAGAAGAACG 1139
Query 1200 TGAGAAACAGAGTGGTGATAACAATAAAAACGCTAATATGAAAATTAAAGATAATACTAG 1259
||||||||||||||||||||| ||||| ||||||||||||||||||| | ||| |||
Sbjct 1140 TGAGAAACAGAGTGGTGATAATAATAAT---GCTAATATGAAAATTAAAGGTGATAATAG 1196
Query 1260 TGGGGAATGGGTTAAGGGGTTGAATAATAAT------CACGATTTAGAAAGTGATAACAa 1313
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1197 TGGGGAATGGGTTAAGGGGTTGAATAATAATAATAATCACGATTTAGAAAGTGAAAACAA 1256
Query 1314 ttttttggtattttaa 1329
||||||||||||||||
Sbjct 1257 TTTTTTGGTATTTTAA 1272
> Ahg474232 jgi|Araly1|474232|fgenesh2_kg.1__4186__AT1G51170.1
Length=1363
Score = 91.6 bits (49), Expect = 1e-17
Identities = 118/150 (79%), Gaps = 9/150 (6%)
Strand=Plus/Plus
Query 759 GTCAAATTCTTTCGTCGGAACAGAGGAATACGT-TGCGCCGGAGGTTATAAGCGGGGACG 817
||| ||||| ||||||||||| || || || | | |||||||||| || |||| ||||
Sbjct 753 GTCGAATTCCTTCGTCGGAACTGATGAGTATATAT-CGCCGGAGGTAATTCGCGGCGACG 811
Query 818 GTCACGATTTTGCCGTCGATTGGTGGTCGT-TAGGGGTTGTTTTA--TATGAGATGTTGT 874
|||||||||||||||||||||||||| | | | || ||| || | || |||||| |||
Sbjct 812 GTCACGATTTTGCCGTCGATTGGTGGGC-TCTCGGAGTT-TTA-ACGTACGAGATGATGT 868
Query 875 ATGGAGCGACGCCGTTTAGAGGATCGAACC 904
| |||| ||| ||||| | |||| |||||
Sbjct 869 ACGGAGAGACACCGTTCAAAGGAA-GAACC 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5