BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25260.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480035 jgi|Araly1|480035|fgenesh2_kg.3__2736__AT3G25260.1 2872 0.0
Ahg925016 jgi|Araly1|925016|scaffold_200577.1 560 1e-158
> Ahg480035 jgi|Araly1|480035|fgenesh2_kg.3__2736__AT3G25260.1
Length=1806
Score = 2872 bits (1555), Expect = 0.0
Identities = 1728/1811 (95%), Gaps = 13/1811 (1%)
Strand=Plus/Plus
Query 136 TTAATCTAAGA-ATACGAAGAGATGCAGATTGAGATGGAAGAGAAGTTTGAAGATTGGAG 194
||||||||||| | || ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1 TTAATCTAAGAGA-ACAAAGAGATGCAGGTTGAGATTGAAGAGAAGTTTGAAGATTGGAG 59
Query 195 AGGCAAAGAGGCAATTTCTGGCAAACATGGTGGGATTAAAGCTGCTTTCATTGCTTGTGT 254
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGTAGAGAGGCAATTTCTGGCAAACATGGTGGGATTAAAGCTGCTTTCATTGCTTGTGT 119
Query 255 TGTAGAGACGATGGAGAATATGGTGTTCTTAGCATGTTCAACCAACTTCATGATGTACTT 314
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 TGTGGAGACGATGGAGAATATGGTGTTCTTAGCATATTCAACCAACTTCATGATGTACTT 179
Query 315 TACGAAATCAATGAATTACTCAACACCCAAAGCAGCAACCATGGTGACTAATTTCGTAGG 374
||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 180 TACAAAATCAATGAATTACTCATCACCCAAAGCAGCAACCATGGTAACTAATTTCATAGG 239
Query 375 GACATCGTTTTTGCTCACTATTTTCGGTGGTTTTGTCGCGGACTCTTTTCTCACTCGCTT 434
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 AACATCCTTTTTGCTCACTATTTTCGGTGGTTTTGTTGCGGACTCTTTTCTCACTCGCTT 299
Query 435 CG-CTGCTTTCGTCCTCTTTGGTTCCATTGAACTCCTGGGTTTGATCATGTTGACACTCC 493
|| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 300 CGCCT-CTTTCGTCCTCTTTGGTTTCATTGAACTCCTGGGTTTGATCTTGTTGACACTCC 358
Query 494 AAGCTCATATCACTAAGTTACAACCTCAAGGAGGTAAAAAACCTTCGACTCCTCAATCAA 553
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 AAGCTCATATCACTAAGTTACAACCTCAAGGAGGTAAAAAACCTTCGACTCTTCAATCAA 418
Query 554 CGGTTCTATTCACTGGACTTTATGCAATAGCTATTGGTGTTGGAGGTGTCAAGGGGTCGT 613
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGGTTCTATTCACCGGACTTTATGCAATAGCTATTGGTGTTGGAGGTGTCAAGGGGTCGT 478
Query 614 TGCCTGCTCATGGAGGCGACCAGATCGGTACTAGAAACCAGAGGCTGATCTCAGGATTCT 673
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 479 TGCCTGCTCATGGAGGCGACCAGCTTGGTACTAGAAACCAGAGGCTGATCTCAGGATTCT 538
Query 674 TCAATTGGTATTTCTTCTCTGTCTGCCTTGGAGGTTTCTTGGCAGTAACACTTATGGTTT 733
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 539 TCAATTGGTATTTCTTCTCTGTCTGCCTTGGAGGTTTCTTGGCCGTAACCCTTATGGTTT 598
Query 734 GGATCGAGGAGAACATAGGATGGAGCTCCAGCTTCACTATATCTACCGCGGTTTTAGCCT 793
||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 599 GGATCGAGGAGAACAAAGGATGGAGCTCAAGCTTCAATATTTCTACCGCGGTTTTAGCCT 658
Query 794 CTGCGATCTTCGTTTTCGTTGCGGGATGCCCGATGTATCGATTCAAGCGCCCAGCAGGGA 853
||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 659 CTGCGATCTTCATTTTCGTTGTGGGATGCCCGATGTATCGATTCAAGCGTCCAGCAGGAA 718
Query 854 GTCCTTTGACCAGAATTGTGAATGTGTTTGTTTCTGCCGCAAGAAACCGAAATAGGTTTG 913
||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 719 GTCCTCTGACCAGAATTGTGAATGTGTTTGCTTCTGCCACAAGAAACCGAAATAGGTTTG 778
Query 914 TAACGGATGCAGAGGTGGTGACACAGAATCATAACTCTACCGACAAAAGCATTCATCACA 973
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 TAACGGATGCAGA---GGTGACACAGAATCATACCTCTACCGACAAAAGCATTCATCACA 835
Query 974 ACAAGTTCAAGTTTTTGAATAAAGCAAAGCTCAACAACAAGATATCAGCAACACAAGTTG 1033
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 836 ACAAGTTCAAGTTTTTGAATAAAGCAAAGCTCAACAACAAGATCTCTGCAACACAAGTTG 895
Query 1034 AAGAAACAAGAACGTTTCTAGCTCTCCTTCCAATATTTGGGAGCACAATTATAATGAACT 1093
||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||
Sbjct 896 AAGAAACAAGAACGTTTCTAGCTCTTCTACCAATATTTGCGAGCACAATTGTAATGAACT 955
Query 1094 GTTGTGTCGCACAAATGGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAAC 1153
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTTGCGTCGCACAAATGGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAAC 1015
Query 1154 TCTCGCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTACTGTGCATGC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCTCGCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTACTGTGCATGC 1075
Query 1214 TCTCTTCTTTAGCTTTATACGAGCTTTTCGGCAAAAGGATCTTATCCAATAGCGAAAGAT 1273
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1076 TCTCTTCTTTAGCTTTATTCGAGCTTTTCGGCAAAAGGATCATATCCAATAGCGAAAGAT 1135
Query 1274 CGTCCAGCTTCAATTTGAAACGTATAGGATACGGTTTAGCTCTCACCTCTATTTCAATGG 1333
|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 1136 CGTCCAGCTTCAATTTGAAACGTATAGGATCCGGTTTAGCTCTCACTTCTGTTTCAATGG 1195
Query 1334 CGGTTGCAGCCATCGTGGAGGTCAAAAGAAAACATGAAGCGGTTCACAACAACATCAAGA 1393
|||||||| |||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1196 CGGTTGCATCCATGGTAGAGGTCAAGAGAAAACATGAAGCGGTTCACAACAACATCAAAA 1255
Query 1394 TTTCTGTGTTCTGGCTAGAGCTTCAATTTGTTATGTTGAGTCTCTCGGATATGTTGACTG 1453
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1256 TTTCTGTGTTCTGGTTAGAGCTTCAATTTGTTTTGTTGAGTTTCTCGGATATGTTGACTG 1315
Query 1454 TTGGAGGAATGTTAGAGTTCTTCTTTAGAGAATCTCCAGCGAGTATGAGGAGCATGAGCA 1513
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1316 TTGGAGGAATGTTAGAGTTCTTCTTTAGGGAATCTCCAGCGAGTATGAGGAGCATGAGCA 1375
Query 1514 CCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTCTTGTGGAGG 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1376 CCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTCTTGTTGAGG 1435
Query 1574 TTGTTAATGGCATCACGGGATGGCTCCGCGACGATCTTAATGAGTCCAGGCTCGAACTAT 1633
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1436 TCGTTAATGGCATCACGGGATGGCTCCGCGATGATCTTAATGAGTCGAGGCTCGAACTGT 1495
Query 1634 TTTATTTGGTTTTATGTGTTCTTAATACCCTTAATCTTTTTAATTATATTTTCTGGGCGA 1693
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTTATGTGGTTTTATGTGTTCTTAATACCCTTAATCTTTTTAATTATATTTTCTGGGCGA 1555
Query 1694 AAAGATATTAGGCAAAAGAACAAAGTATGTTGCCTTGTCTATAGAGAACTCCTTAATTTA 1753
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1556 AAAGATATTAGGCAAAAGAACAAAGTATGTTGTCTTGTCTATAGAGAACTCCTTAATTTA 1615
Query 1754 GGTAAGATGCTATGCATGTAGTGGAAGTCTAAACCAAGTAA----GTTGCGTAATGGttt 1809
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1616 GGTAAGTTGCTATGCATGTAGTGGAAGTCTAAACCAAGTAATTAAGTTGCGTAATGGTTT 1675
Query 1810 tttttGTGTG-G-TGGTTTTCAAGTTGGTTGATGTGTCATGTAATAATGGGAGGAAATAG 1867
|||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1676 TTTTTGTGTGTGGTGGTTTTCAAGTTGGTTGATGTGTCATGTAATAATGGGAAGAAATAG 1735
Query 1868 TTACTACCCCATTTAAGTTTCATAATTTGTGATTCTACCTAATTTAAGAAACTATGAACG 1927
||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| |
Sbjct 1736 TTACTACCCCATTTAAGTTTCATAATTTGTGATTCTACCAAAATTAAGAAAGTGTGAAAG 1795
Query 1928 TAACATTTTCT 1938
| |||||||||
Sbjct 1796 TGACATTTTCT 1806
> Ahg925016 jgi|Araly1|925016|scaffold_200577.1
Length=1582
Score = 560 bits (303), Expect = 1e-158
Identities = 1085/1446 (75%), Gaps = 120/1446 (8%)
Strand=Plus/Plus
Query 170 TGGAAGAGAAGTTTGA-AGATTGGAGAGGCAA-AGAGGCAATTTCTGGCAAACATGGTGG 227
||||||| || ||| | |||||||||||| || ||| |||| ||||||||||||||||
Sbjct 37 TGGAAGAAAAATTT-ATAGATTGGAGAGG-AAGAGATACAATCCCTGGCAAACATGGTGG 94
Query 228 GATTAAAGCTGCTTTC-ATTGCTTGTGTTGTAGAGACGA-TGGAGAAT-ATGGTGTTCTT 284
||||| |||||| ||| ||||||| |||||| ||| | | ||||| || ||||||| | |
Sbjct 95 GATTAGAGCTGC-TTCTATTGCTTATGTTGTGGAG-CTACTGGAG-ATCATGGTGTCCAT 151
Query 285 AGCATGTT-CAACCAACTTCATGATGTACTTT-ACGAAATCAATGAATTACTCAACACCC 342
||| | || || |||| | || | || ||| | |||||||||| |||||||| || ||
Sbjct 152 AGC-TATTGGAAACAACATGGTGTTATA-TTTCATGAAATCAATGCATTACTCACCAGCC 209
Query 343 AAAGCAGCAACCATGGTGACTAATTTCGTAGGGACATCGTT-TTTGCTCACTAT-TTTCG 400
|||||||||| ||||||||| |||||| | || ||||| || |||||||||| | ||| |
Sbjct 210 AAAGCAGCAAACATGGTGACCAATTTCATTGGAACATC-TTATTTGCTCACTCTCTTT-G 267
Query 401 GTGGTTTTGTCG-CGGACTCTTTTC-TCACTCGCTTCGCTGCTTTCGTCCTCTT-TGGTT 457
||||||| || | | ||||| ||| ||||||||| | | ||||| || |||| | |||
Sbjct 268 GTGGTTTCGT-GACTGACTC-GTTCGTCACTCGCTCCACAACTTTCATCATCTTCT-GTT 324
Query 458 CCATTGAACTCCTGGGTTTGATCATGTTGACACTCCAAGCTCA-TATCACTAAGT-TACA 515
|||||||| | |||||||| | |||||||| | |||||||| || | |||| | ||||
Sbjct 325 CCATTGAAATATTGGGTTTGCTTGTGTTGACATTTCAAGCTCATTA-CCCTAA-TCTACA 382
Query 516 ACCTCAAGGAGGTAAAAAACCTTCGACTCCTCAATCAACGGTTCTATTCACTGGACTTTA 575
|||| | ||| ||| | ||| || |||| ||||||||||||||| ||||| ||||||||
Sbjct 383 ACCTGAGGGAAATAATACACCATCAACTCTTCAATCAACGGTTCTTTTCACGGGACTTTA 442
Query 576 TGCAATAG-CTATTGGTGTTGGAGGTGTCAAGG-GGTCGTTGCCTGCTCATGGAGGCGAC 633
| | | || ||||| || ||| | ||| ||||||| ||| || ||||| ||
Sbjct 443 TTTGTTCGCCT-TTGGTACGGGCGGT-ACTAGGCCCTCGTTGCTTGCACACGGAGGTGAT 500
Query 634 CAGATCGGTACTAGAAACCAGAG-GCTGATCTCAG-GATTCTTCAATTGGTATTTCTTCT 691
||| | | || |||| |||| || | |||||| | ||||||||||||||| | |||||
Sbjct 501 CAGTTTGATAGTAGACACCAAAGAG-AGATCTC-GAAATTCTTCAATTGGTACTACTTCT 558
Query 692 CTGTCTGCCTTGGA-GGTTTCTTGGC-AGTAACAC-TTATGGTTTGGATCGAGGAGAACA 748
||||||| ||||| || || |||| | |||| | |||||| |||||| ||
Sbjct 559 TTGTCTGCTTTGGATGG-CTCATGGCTA-TAAC-CGTTATGGCTTGGAT---------CA 606
Query 749 TAGGATGGAGCTCCAGCTTCACTATATCTACCGCGGTTTTAGC-CTCTGCGATCT-TCGT 806
| | ||||| |||| |||||| | | | || |||| | |||| || | ||
Sbjct 607 -A--A--GAGCT----TTTCAATATATCAATTGTGCTTCTAGCGAT-TGCG--CTAT-GT 653
Query 807 -TTTCGTTG--C-GGGATGCCCGATGTATCGATTCAAGCG-CCCAGCAGGGAGTCCTTTG 861
||| ||| | |||| || |||||||||| || || || || || ||||| |||
Sbjct 654 ATTT--TTGCACTAGGATTACCTTTGTATCGATTGAAACGTCCTAG-TGGAAGTCCCTTG 710
Query 862 ACCAGAATTGTGAATGTGTTTGTTTCTGCCGCAAGAAACCGAAATAGGTT-TGTAACGGA 920
|| || |||| ||||||||| ||||||||||||| | || ||| |||| ||| |||
Sbjct 711 ACAAGGATTGCAAATGTGTTTATTTCTGCCGCAAGGTATCGCAAT-GGTTCTGTTTTGGA 769
Query 921 TGCAGAGGTGGTGACACAGAATCATAACTCTACCGACAA-AAGCATTCAT---CACAACA 976
|| |||| || || || || ||| | | ||| ||||| || |||||| |||||||
Sbjct 770 TGTAGAGATGATG-CAAAGCCTCA-CA-TTTACTGACAACAA-TATTCATCACCACAACA 825
Query 977 AGTTCAAGT-TTTTGAATAAAGCAAAGCTCAACAACAAGATATCAGCAACACAAGTTGAA 1035
|||| |||| ||| | |||||||| | | ||||| || || |||||||||||||| |||
Sbjct 826 AGTTAAAGTGTTTAG-ATAAAGCATTGTTGAACAAAAACATCTCAGCAACACAAGTCGAA 884
Query 1036 GAAACAAGAACGTTTCTAGCTCTCCTTCCAATATTTGGGAGCACAATTATAATGAACT-G 1094
||||||||||| ||| | | |||||| ||||| ||| ||||| ||| | ||||| |
Sbjct 885 GAAACAAGAACATTTATCGGTCTCCTACCAATCTTTTTTAGCACGATTGTCATGAA-TAC 943
Query 1095 TTGTGTCGCACAAAT-GGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAAC 1153
|||||| |||||| | | |||||| |||| |||||||||||| | | |||||||
Sbjct 944 TTGTGTGGCACAATTACTG-ACCTTCACCGTACAACAAGGCATGACCATGAGCAGAAAAA 1002
Query 1154 TCTC-GCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTA-C-TGTGCA 1210
|||| | ||| | ||||| ||||| |||||||||||| || | ||| | | | | ||
Sbjct 1003 TCTCTTC-TTCAATGGAGATTCCCGTACCTTCCCTCAATGTCA-T-CTCAATCATCTTCA 1059
Query 1211 TGCTCTC-TTCTTTAGCTTTATACGAGCTTTTCGGCAAAAGGATCTTATCCAATAGCGAA 1269
| ||| | ||| || | ||||| || || ||||| |||| | ||| | | | |
Sbjct 1060 TTCTCGCTTTC-ATATCCTTATATGAACTCTTCGGGAAAA-G----TAT-C-A-A-C--- 1106
Query 1270 AGATCGTCCAGCTTCAATTTGAAACGTATAGGA-TACGG-TTTAGCTCTCACCTCTATTT 1327
||| | || |||||| ||||||||| || ||| | ||| || | | ||| |||||||||
Sbjct 1107 AGAACATCAAGCTTCTCTTTGAAACGAATTGGACT-CGGCTTGA-CCCTCTCCTCTATTT 1164
Query 1328 CAATGGCGGTTGCAGCCATCGTGGAGGTCAAAAGAAAACATGAAGCGGTTCACAACAACA 1387
||||||||||||||||||| || |||| ||| || ||||| || |||||||| || ||
Sbjct 1165 CAATGGCGGTTGCAGCCATTGTTGAGGCCAAGAGGAAACACGAGGCGGTTCAAAATGACG 1224
Query 1388 TCAAGATT-TCTGTGTTCTGGCTAGA-GCTTCAATTTGTTATGTTGAGTCTCTCGGATAT 1445
| | || | ||||| ||||||||| | | |||| | | | ||| | ||| ||||||||||
Sbjct 1225 TTA-GAATATCTGTTTTCTGGCTA-ATGTTTCAGTATCTCATGCTAAGTTTCTCGGATAT 1282
Query 1446 GTTGACTGTTGG-AGGAATGTTAGAGTTCTTCTTTAGAGAATCTCCAGCGAGTATGAGGA 1504
||||| |||| ||| ||| |||||| |||| ||||||| ||||||||||||||| ||
Sbjct 1283 ATTGACC-TTGGGAGGGATGCAAGAGTTTTTCTATAGAGAAGCTCCAGCGAGTATGAAGA 1341
Query 1505 GCATGAGCACCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTC 1564
||||||||| || || ||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1342 GCATGAGCATAGCATTGGGGTGGTGCTCCATTGCAATGGGTTTTTTCCTTAGCTCACTTC 1401
Query 1565 TTGTGG 1570
||||||
Sbjct 1402 TTGTGG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5