BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25265.1

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952551 jgi|Araly1|952551|scaffold_87700003.1                      285    1e-76


> Ahg952551 jgi|Araly1|952551|scaffold_87700003.1
Length=273

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 176/187 (94%), Gaps = 0/187 (0%)
 Strand=Plus/Plus

Query  60   AGGAGTGGTTGGAAATGTGGAGCAAAAAAGCCAAGATTGGTGTTGGAGCATTGTAAACAA  119
            ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  65   AGGTGTGGTTGGAAATGTGGAGCAAAAAAGCCAAGATTGGTGTTGGAGCGTTGTAAACAA  124

Query  120  AGACCGTTGTCTTCAGAAAGAGTGTGAGTCTCTGTGTTCGAAGAAACATCCGAAAGGAAA  179
            ||||||||||||||||||||||||||| |||||||||| ||| ||| |||| ||||||||
Sbjct  125  AGACCGTTGTCTTCAGAAAGAGTGTGAATCTCTGTGTTTGAAAAAAAATCCAAAAGGAAA  184

Query  180  ATTTATGTGCATACCTTCAACCCCGGGAGGACCTTTTCAATGTCACTGTCGTCATCCTTG  239
            |||||| |||  ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  185  ATTTATTTGCGCACCTTCAACCCCGGGAGGACCTTTTCAATGTCAATGTCGTCATCCTTG  244

Query  240  CCGTTAA  246
            |||||||
Sbjct  245  CCGTTAA  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8515982203


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5