BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25280.1 Length=1566 Score E Sequences producing significant alignments: (Bits) Value Ahg930669 jgi|Araly1|930669|scaffold_303126.1 2505 0.0 Ahg342706 jgi|Araly1|342706|fgenesh1_pg.C_scaffold_3002469 2505 0.0 > Ahg930669 jgi|Araly1|930669|scaffold_303126.1 Length=1606 Score = 2505 bits (1356), Expect = 0.0 Identities = 1499/1569 (96%), Gaps = 6/1569 (0%) Strand=Plus/Plus Query 1 ATGGAGAATGATATGGAAGAGAAGTTTGAAGATTGGAAAGGTAAAGAGGCAATCCCAGGG 60 ||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| | || Sbjct 21 ATGGAGAATGAGATGGAGGATAAGTTTGAAAATTGGAAAGGTAAAGAGGCAATCTCTGGC 80 Query 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 140 Query 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATATTTCATGGGATCAATGCATTATACA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || Sbjct 141 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATACTTCATGGGATCGATGCATTATTCA 200 Query 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 260 Query 241 TTTGGTGGTTTTATCGCTGACTCTTTCGTCACTCATTTCACAACTTTCATCGTCTTCTGT 300 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 261 TTTGGTGGTTTTATCGCTGACTCTTTCCTCACTCATTTCACAACTTTCATCATCTTCTGT 320 Query 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGTTACTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 321 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGCTACTG 380 Query 361 CCTGAAAAAGATAAAACACCTTCAACTCTTCAATCAGCGATTCTTTTCACAGGACTCTAC 420 || || |||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 381 CCCGAGAAAGGTAAAACACCTTCAACTCTTCAATCAACGATTCTTTTCACAGGACTCTAT 440 Query 421 GCAATGGCTATTGGTACGGGCGGTTTAAAGGCATCGTTGCCTAGTCATGGAGGCGATCAA 480 || ||||||| ||||||||||||| ||||||| |||||||| | ||| |||||||||||| Sbjct 441 GCGATGGCTACTGGTACGGGCGGTATAAAGGCCTCGTTGCCCACTCACGGAGGCGATCAA 500 Query 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTCGATTGGTTATACTTCTCTATA 540 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 501 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTTGATTGGTTATACTTCTCTATA 560 Query 541 TGCTCTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTGGATCGAGGAAAAGAAAGGGTGG 600 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 561 TGCTTTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTTGATCGAGGAAAAGAAAGGGTGG 620 Query 601 ATA-TGGAGCTTCAATATATCCGTTGGAATTCTAGCGACGGCGCTGTGTATTTTTACTGT 659 | | ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || Sbjct 621 A-AGTGGAGCTTCAATATATCGGTTGGGATTCTAGCGACTGCGCTTTGTATTTTTACGGT 679 Query 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 739 Query 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAAATCTGATTTGGATGAAGAGATGATGCG 779 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 740 TGTGATTATTTCTGCCGCAAGAAACCGAAATAGATCTGATTTGGATGAAGAGATGATGCG 799 Query 780 AGGTCTTATCTCTATCT-ACAAGAACAATAGTCACAACAAGTTAAAGTGGATAGATAAAG 838 | |||||||| || | | ||||||||| | |||||||||||||||||||||||||||||| Sbjct 800 AAGTCTTATCCCT-TTTGACAAGAACATTGGTCACAACAAGTTAAAGTGGATAGATAAAG 858 Query 839 CAACGTTGAACAAAAACATCTCAGAAACAGAAGTTGAAGAAACAAGAACGTTTTTGGGTC 898 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 859 CAATGTTGAACAAAAACATCTCAGAAACAGAAGTTGAGGAAACAAGAACGTTTTTGGGTC 918 Query 899 TTCTACCAATCTTTGGTAGCACAATTGTCATGAGCTGCTGCGTGGCACAACTCTCTACCT 958 || |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 919 TTTTACCAATCTTTGGTAGCACAATTGTCATGAGCTGTTGCGTGGCACAACTATCTACCT 978 Query 959 TCTCCGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 TCTCTGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1038 Query 1019 TACCTTCTCTCACCGCCATTCCTCTCATCTTCATGCTCTTATCTATACCTTTATACGAAT 1078 ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1039 TACCTTCCCTCAACGCCATTCCTCTCATCTTCATGCTCTTTTCTATACCTTTATACGAAT 1098 Query 1079 TCTTTGGAAAAAAGATCTCATCAGGCAACAACAATAGATCATCCAGTTTCAATTTGAAAC 1138 |||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 1099 TCTTTGGAAAAAGGATCTCATTAGGCAGCAACAATAGATCATCTAGTTTCAATTTGAAAC 1158 Query 1139 GCATTGGACTCGGCCTAGCTCTCTCTTCGGTTTCAATGGCGGTTTCTGCCATCGTAGAGG 1198 ||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| |||| Sbjct 1159 GCATTGGACTCGGCCTAGCTCTCTCCTCTGTTTCGATGGCGGTTGCTGCCATCGTTGAGG 1218 Query 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1219 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1278 Query 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1279 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1338 Query 1319 TTTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 TCTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1398 Query 1379 CCGCATTAGGTTTCTTTC-TTAGCACAACTCTTGTAGAGGTTACAAATGCCGTCACGGGA 1437 ||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1399 CCGCATTCGGTTTCTT-CGTTAGCACAACTCTTGTGGAGGTCACAAATGCCGTCACCGGA 1457 Query 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGACAAGGCTTGAACTTTTT 1497 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1458 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGGCAAGGCTTGAACTTTTT 1517 Query 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTGAACTATATTTTTTGGGCAAAG 1557 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1518 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTTAACTATATTTTTTGGGCAAAG 1577 Query 1558 AGATATTAA 1566 ||||||||| Sbjct 1578 AGATATTAA 1586 > Ahg342706 jgi|Araly1|342706|fgenesh1_pg.C_scaffold_3002469 Length=1566 Score = 2505 bits (1356), Expect = 0.0 Identities = 1499/1569 (96%), Gaps = 6/1569 (0%) Strand=Plus/Plus Query 1 ATGGAGAATGATATGGAAGAGAAGTTTGAAGATTGGAAAGGTAAAGAGGCAATCCCAGGG 60 ||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| | || Sbjct 1 ATGGAGAATGAGATGGAGGATAAGTTTGAAAATTGGAAAGGTAAAGAGGCAATCTCTGGC 60 Query 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120 Query 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATATTTCATGGGATCAATGCATTATACA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || Sbjct 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATACTTCATGGGATCGATGCATTATTCA 180 Query 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240 Query 241 TTTGGTGGTTTTATCGCTGACTCTTTCGTCACTCATTTCACAACTTTCATCGTCTTCTGT 300 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 241 TTTGGTGGTTTTATCGCTGACTCTTTCCTCACTCATTTCACAACTTTCATCATCTTCTGT 300 Query 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGTTACTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGCTACTG 360 Query 361 CCTGAAAAAGATAAAACACCTTCAACTCTTCAATCAGCGATTCTTTTCACAGGACTCTAC 420 || || |||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 CCCGAGAAAGGTAAAACACCTTCAACTCTTCAATCAACGATTCTTTTCACAGGACTCTAT 420 Query 421 GCAATGGCTATTGGTACGGGCGGTTTAAAGGCATCGTTGCCTAGTCATGGAGGCGATCAA 480 || ||||||| ||||||||||||| ||||||| |||||||| | ||| |||||||||||| Sbjct 421 GCGATGGCTACTGGTACGGGCGGTATAAAGGCCTCGTTGCCCACTCACGGAGGCGATCAA 480 Query 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTCGATTGGTTATACTTCTCTATA 540 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTTGATTGGTTATACTTCTCTATA 540 Query 541 TGCTCTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTGGATCGAGGAAAAGAAAGGGTGG 600 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 541 TGCTTTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTTGATCGAGGAAAAGAAAGGGTGG 600 Query 601 ATA-TGGAGCTTCAATATATCCGTTGGAATTCTAGCGACGGCGCTGTGTATTTTTACTGT 659 | | ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || Sbjct 601 A-AGTGGAGCTTCAATATATCGGTTGGGATTCTAGCGACTGCGCTTTGTATTTTTACGGT 659 Query 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719 Query 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAAATCTGATTTGGATGAAGAGATGATGCG 779 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAGATCTGATTTGGATGAAGAGATGATGCG 779 Query 780 AGGTCTTATCTCTATCT-ACAAGAACAATAGTCACAACAAGTTAAAGTGGATAGATAAAG 838 | |||||||| || | | ||||||||| | |||||||||||||||||||||||||||||| Sbjct 780 AAGTCTTATCCCT-TTTGACAAGAACATTGGTCACAACAAGTTAAAGTGGATAGATAAAG 838 Query 839 CAACGTTGAACAAAAACATCTCAGAAACAGAAGTTGAAGAAACAAGAACGTTTTTGGGTC 898 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 839 CAATGTTGAACAAAAACATCTCAGAAACAGAAGTTGAGGAAACAAGAACGTTTTTGGGTC 898 Query 899 TTCTACCAATCTTTGGTAGCACAATTGTCATGAGCTGCTGCGTGGCACAACTCTCTACCT 958 || |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 899 TTTTACCAATCTTTGGTAGCACAATTGTCATGAGCTGTTGCGTGGCACAACTATCTACCT 958 Query 959 TCTCCGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TCTCTGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018 Query 1019 TACCTTCTCTCACCGCCATTCCTCTCATCTTCATGCTCTTATCTATACCTTTATACGAAT 1078 ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1019 TACCTTCCCTCAACGCCATTCCTCTCATCTTCATGCTCTTTTCTATACCTTTATACGAAT 1078 Query 1079 TCTTTGGAAAAAAGATCTCATCAGGCAACAACAATAGATCATCCAGTTTCAATTTGAAAC 1138 |||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 1079 TCTTTGGAAAAAGGATCTCATTAGGCAGCAACAATAGATCATCTAGTTTCAATTTGAAAC 1138 Query 1139 GCATTGGACTCGGCCTAGCTCTCTCTTCGGTTTCAATGGCGGTTTCTGCCATCGTAGAGG 1198 ||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| |||| Sbjct 1139 GCATTGGACTCGGCCTAGCTCTCTCCTCTGTTTCGATGGCGGTTGCTGCCATCGTTGAGG 1198 Query 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258 Query 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318 Query 1319 TTTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TCTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378 Query 1379 CCGCATTAGGTTTCTTTC-TTAGCACAACTCTTGTAGAGGTTACAAATGCCGTCACGGGA 1437 ||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1379 CCGCATTCGGTTTCTT-CGTTAGCACAACTCTTGTGGAGGTCACAAATGCCGTCACCGGA 1437 Query 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGACAAGGCTTGAACTTTTT 1497 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGGCAAGGCTTGAACTTTTT 1497 Query 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTGAACTATATTTTTTGGGCAAAG 1557 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTTAACTATATTTTTTGGGCAAAG 1557 Query 1558 AGATATTAA 1566 ||||||||| Sbjct 1558 AGATATTAA 1566 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58658977300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5