BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25280.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930669 jgi|Araly1|930669|scaffold_303126.1 2505 0.0
Ahg342706 jgi|Araly1|342706|fgenesh1_pg.C_scaffold_3002469 2505 0.0
> Ahg930669 jgi|Araly1|930669|scaffold_303126.1
Length=1606
Score = 2505 bits (1356), Expect = 0.0
Identities = 1499/1569 (96%), Gaps = 6/1569 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATGATATGGAAGAGAAGTTTGAAGATTGGAAAGGTAAAGAGGCAATCCCAGGG 60
||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| | ||
Sbjct 21 ATGGAGAATGAGATGGAGGATAAGTTTGAAAATTGGAAAGGTAAAGAGGCAATCTCTGGC 80
Query 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 140
Query 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATATTTCATGGGATCAATGCATTATACA 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 141 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATACTTCATGGGATCGATGCATTATTCA 200
Query 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 260
Query 241 TTTGGTGGTTTTATCGCTGACTCTTTCGTCACTCATTTCACAACTTTCATCGTCTTCTGT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 261 TTTGGTGGTTTTATCGCTGACTCTTTCCTCACTCATTTCACAACTTTCATCATCTTCTGT 320
Query 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGTTACTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 321 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGCTACTG 380
Query 361 CCTGAAAAAGATAAAACACCTTCAACTCTTCAATCAGCGATTCTTTTCACAGGACTCTAC 420
|| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 381 CCCGAGAAAGGTAAAACACCTTCAACTCTTCAATCAACGATTCTTTTCACAGGACTCTAT 440
Query 421 GCAATGGCTATTGGTACGGGCGGTTTAAAGGCATCGTTGCCTAGTCATGGAGGCGATCAA 480
|| ||||||| ||||||||||||| ||||||| |||||||| | ||| ||||||||||||
Sbjct 441 GCGATGGCTACTGGTACGGGCGGTATAAAGGCCTCGTTGCCCACTCACGGAGGCGATCAA 500
Query 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTCGATTGGTTATACTTCTCTATA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 501 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTTGATTGGTTATACTTCTCTATA 560
Query 541 TGCTCTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTGGATCGAGGAAAAGAAAGGGTGG 600
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 561 TGCTTTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTTGATCGAGGAAAAGAAAGGGTGG 620
Query 601 ATA-TGGAGCTTCAATATATCCGTTGGAATTCTAGCGACGGCGCTGTGTATTTTTACTGT 659
| | ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 621 A-AGTGGAGCTTCAATATATCGGTTGGGATTCTAGCGACTGCGCTTTGTATTTTTACGGT 679
Query 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 739
Query 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAAATCTGATTTGGATGAAGAGATGATGCG 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 740 TGTGATTATTTCTGCCGCAAGAAACCGAAATAGATCTGATTTGGATGAAGAGATGATGCG 799
Query 780 AGGTCTTATCTCTATCT-ACAAGAACAATAGTCACAACAAGTTAAAGTGGATAGATAAAG 838
| |||||||| || | | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 800 AAGTCTTATCCCT-TTTGACAAGAACATTGGTCACAACAAGTTAAAGTGGATAGATAAAG 858
Query 839 CAACGTTGAACAAAAACATCTCAGAAACAGAAGTTGAAGAAACAAGAACGTTTTTGGGTC 898
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 859 CAATGTTGAACAAAAACATCTCAGAAACAGAAGTTGAGGAAACAAGAACGTTTTTGGGTC 918
Query 899 TTCTACCAATCTTTGGTAGCACAATTGTCATGAGCTGCTGCGTGGCACAACTCTCTACCT 958
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 919 TTTTACCAATCTTTGGTAGCACAATTGTCATGAGCTGTTGCGTGGCACAACTATCTACCT 978
Query 959 TCTCCGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TCTCTGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1038
Query 1019 TACCTTCTCTCACCGCCATTCCTCTCATCTTCATGCTCTTATCTATACCTTTATACGAAT 1078
||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1039 TACCTTCCCTCAACGCCATTCCTCTCATCTTCATGCTCTTTTCTATACCTTTATACGAAT 1098
Query 1079 TCTTTGGAAAAAAGATCTCATCAGGCAACAACAATAGATCATCCAGTTTCAATTTGAAAC 1138
|||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1099 TCTTTGGAAAAAGGATCTCATTAGGCAGCAACAATAGATCATCTAGTTTCAATTTGAAAC 1158
Query 1139 GCATTGGACTCGGCCTAGCTCTCTCTTCGGTTTCAATGGCGGTTTCTGCCATCGTAGAGG 1198
||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| ||||
Sbjct 1159 GCATTGGACTCGGCCTAGCTCTCTCCTCTGTTTCGATGGCGGTTGCTGCCATCGTTGAGG 1218
Query 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1278
Query 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1338
Query 1319 TTTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TCTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1398
Query 1379 CCGCATTAGGTTTCTTTC-TTAGCACAACTCTTGTAGAGGTTACAAATGCCGTCACGGGA 1437
||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1399 CCGCATTCGGTTTCTT-CGTTAGCACAACTCTTGTGGAGGTCACAAATGCCGTCACCGGA 1457
Query 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGACAAGGCTTGAACTTTTT 1497
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1458 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGGCAAGGCTTGAACTTTTT 1517
Query 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTGAACTATATTTTTTGGGCAAAG 1557
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1518 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTTAACTATATTTTTTGGGCAAAG 1577
Query 1558 AGATATTAA 1566
|||||||||
Sbjct 1578 AGATATTAA 1586
> Ahg342706 jgi|Araly1|342706|fgenesh1_pg.C_scaffold_3002469
Length=1566
Score = 2505 bits (1356), Expect = 0.0
Identities = 1499/1569 (96%), Gaps = 6/1569 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATGATATGGAAGAGAAGTTTGAAGATTGGAAAGGTAAAGAGGCAATCCCAGGG 60
||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| | ||
Sbjct 1 ATGGAGAATGAGATGGAGGATAAGTTTGAAAATTGGAAAGGTAAAGAGGCAATCTCTGGC 60
Query 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120
Query 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATATTTCATGGGATCAATGCATTATACA 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATACTTCATGGGATCGATGCATTATTCA 180
Query 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240
Query 241 TTTGGTGGTTTTATCGCTGACTCTTTCGTCACTCATTTCACAACTTTCATCGTCTTCTGT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 TTTGGTGGTTTTATCGCTGACTCTTTCCTCACTCATTTCACAACTTTCATCATCTTCTGT 300
Query 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGTTACTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGCTACTG 360
Query 361 CCTGAAAAAGATAAAACACCTTCAACTCTTCAATCAGCGATTCTTTTCACAGGACTCTAC 420
|| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 CCCGAGAAAGGTAAAACACCTTCAACTCTTCAATCAACGATTCTTTTCACAGGACTCTAT 420
Query 421 GCAATGGCTATTGGTACGGGCGGTTTAAAGGCATCGTTGCCTAGTCATGGAGGCGATCAA 480
|| ||||||| ||||||||||||| ||||||| |||||||| | ||| ||||||||||||
Sbjct 421 GCGATGGCTACTGGTACGGGCGGTATAAAGGCCTCGTTGCCCACTCACGGAGGCGATCAA 480
Query 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTCGATTGGTTATACTTCTCTATA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTTGATTGGTTATACTTCTCTATA 540
Query 541 TGCTCTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTGGATCGAGGAAAAGAAAGGGTGG 600
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TGCTTTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTTGATCGAGGAAAAGAAAGGGTGG 600
Query 601 ATA-TGGAGCTTCAATATATCCGTTGGAATTCTAGCGACGGCGCTGTGTATTTTTACTGT 659
| | ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 601 A-AGTGGAGCTTCAATATATCGGTTGGGATTCTAGCGACTGCGCTTTGTATTTTTACGGT 659
Query 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719
Query 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAAATCTGATTTGGATGAAGAGATGATGCG 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAGATCTGATTTGGATGAAGAGATGATGCG 779
Query 780 AGGTCTTATCTCTATCT-ACAAGAACAATAGTCACAACAAGTTAAAGTGGATAGATAAAG 838
| |||||||| || | | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 780 AAGTCTTATCCCT-TTTGACAAGAACATTGGTCACAACAAGTTAAAGTGGATAGATAAAG 838
Query 839 CAACGTTGAACAAAAACATCTCAGAAACAGAAGTTGAAGAAACAAGAACGTTTTTGGGTC 898
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 CAATGTTGAACAAAAACATCTCAGAAACAGAAGTTGAGGAAACAAGAACGTTTTTGGGTC 898
Query 899 TTCTACCAATCTTTGGTAGCACAATTGTCATGAGCTGCTGCGTGGCACAACTCTCTACCT 958
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 899 TTTTACCAATCTTTGGTAGCACAATTGTCATGAGCTGTTGCGTGGCACAACTATCTACCT 958
Query 959 TCTCCGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTCTGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018
Query 1019 TACCTTCTCTCACCGCCATTCCTCTCATCTTCATGCTCTTATCTATACCTTTATACGAAT 1078
||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 TACCTTCCCTCAACGCCATTCCTCTCATCTTCATGCTCTTTTCTATACCTTTATACGAAT 1078
Query 1079 TCTTTGGAAAAAAGATCTCATCAGGCAACAACAATAGATCATCCAGTTTCAATTTGAAAC 1138
|||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1079 TCTTTGGAAAAAGGATCTCATTAGGCAGCAACAATAGATCATCTAGTTTCAATTTGAAAC 1138
Query 1139 GCATTGGACTCGGCCTAGCTCTCTCTTCGGTTTCAATGGCGGTTTCTGCCATCGTAGAGG 1198
||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| ||||
Sbjct 1139 GCATTGGACTCGGCCTAGCTCTCTCCTCTGTTTCGATGGCGGTTGCTGCCATCGTTGAGG 1198
Query 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258
Query 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318
Query 1319 TTTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378
Query 1379 CCGCATTAGGTTTCTTTC-TTAGCACAACTCTTGTAGAGGTTACAAATGCCGTCACGGGA 1437
||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1379 CCGCATTCGGTTTCTT-CGTTAGCACAACTCTTGTGGAGGTCACAAATGCCGTCACCGGA 1437
Query 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGACAAGGCTTGAACTTTTT 1497
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGGCAAGGCTTGAACTTTTT 1497
Query 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTGAACTATATTTTTTGGGCAAAG 1557
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTTAACTATATTTTTTGGGCAAAG 1557
Query 1558 AGATATTAA 1566
|||||||||
Sbjct 1558 AGATATTAA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5