BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25400.1
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480039 jgi|Araly1|480039|fgenesh2_kg.3__2740__AT3G25400.1 778 0.0
Ahg356408 jgi|Araly1|356408|fgenesh1_pg.C_scaffold_8000195 278 4e-74
Ahg948553 jgi|Araly1|948553|scaffold_800440.1 167 1e-40
Ahg929216 jgi|Araly1|929216|scaffold_301673.1 156 2e-37
> Ahg480039 jgi|Araly1|480039|fgenesh2_kg.3__2740__AT3G25400.1
Length=566
Score = 778 bits (421), Expect = 0.0
Identities = 523/572 (91%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 45 TAGGGTTTTAGTCTTTTGTGTAATAATTCATTGATCATGAACAAGGGAGAAGAAGGAGGA 104
|||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||||||
Sbjct 1 TAGGGTTTAAGTCTTTTGTGTAAAAAATCATCGATAATGAAAAAGGGAGAAGAAGGAGGA 60
Query 105 GAAGACAAGGAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAA 164
|||| || | | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAAG--AA-G-A--GGTTTCTCTTCAAACTCTTAGTAAGAAAATGGATGATTTTGCAAAA 114
Query 165 GCTAGAGATTGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCTATGGTGGGTGAA 224
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 115 GCTAGAGATTGGGAGAAGTATCACAGCCCAAGGAATCTCCTTCTTGCCATGGTGGGTGAA 174
Query 225 GTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGAT 284
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 175 GTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGGGAAGTGGCTAGAGGATGTCCAGAT 234
Query 285 TGGAAAGAAGAAGAGAAAGTCCATCTTGGAGAAGAGTTATCAGATGTTTTGTTGTATTTG 344
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 235 TGGAAAGAAGAAGAGAAAGTGCATCTTGGAGAAGAGTTATCCGATGTGTTGTTGTATTTG 294
Query 345 GTGAGGCTTTCGGATGCGTGTGGTGTCGATTTAGGCAAAGCCGCTCTGCGCAAGATCGAG 404
|||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||
Sbjct 295 GTGAGGCTTTCGGATGCGTGCGGTGTTGATTTAGGCAAAGCGGCTTTGCGCAAGATCGAG 354
Query 405 CTTAATGCTATTAAGTATCCAGTTCCCAAAAAGACTGATGATCATTGTGTTGGTGATGGT 464
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 355 CTTAATGCTATTAAGTATCCAGCACCCAAACAGACTGATGATCATTGTGTTGGTGATGGT 414
Query 465 GAAGATTCAAGCAGCAAGATTAAGTTGAATGAAGAAAACTAATCTCTCTTATTAGTGGTT 524
||| |||| ||| |||| |||||||||||||||||| | ||||||||||| |||||||||
Sbjct 415 GAACATTCCAGCGGCAATATTAAGTTGAATGAAGAACATTAATCTCTCTTGTTAGTGGTT 474
Query 525 TTGTGAGTAAGTTT-ATTGTGGGTATTTTCTTGTTATGAAGTAGGAGCATGAT-CAAGAA 582
| |||||| |||| ||| ||||| ||||||||| ||||| | |||||| || |||||
Sbjct 475 TGGTGAGTGTGTTTTATTATGGGTGTTTTCTTGTAATGAATTTGGAGCAAGAGACAAGAT 534
Query 583 CATATAATCTTCGAAGGCCTCTAATTATATTT 614
||||||||||| ||||||||||||||||||||
Sbjct 535 CATATAATCTTTGAAGGCCTCTAATTATATTT 566
> Ahg356408 jgi|Araly1|356408|fgenesh1_pg.C_scaffold_8000195
Length=474
Score = 278 bits (150), Expect = 4e-74
Identities = 167/175 (95%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 114 GAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGAT 173
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAGAGGTTTCTCTTGAAACTTTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGAT 357
Query 174 TGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCT-ATGGTGGGTGAAGTGGGAGA 232
||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 358 TGGGAGAAGTATCACAGCCCAAGAAATCTCCTTCTTG-TGATGGTGGGTGAAGTGGGAGA 416
Query 233 GCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGATTGG 287
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 GCTATCAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGGATGTCCAGATTGG 471
> Ahg948553 jgi|Araly1|948553|scaffold_800440.1
Length=476
Score = 167 bits (90), Expect = 1e-40
Identities = 96/99 (97%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 216 GTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGA 275
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 349 GTGGGTGAAGTGGGAGAGCTATTAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGGA 408
Query 276 TGTCCAGATTGGAAAGAAGAAGAGAAAGTCCATCTTGGA 314
||||||||||||||||||||||||||||| |||||||||
Sbjct 409 TGTCCAGATTGGAAAGAAGAAGAGAAAGTGCATCTTGGA 447
> Ahg929216 jgi|Araly1|929216|scaffold_301673.1
Length=236
Score = 156 bits (84), Expect = 2e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 215 GGTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGG 274
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 GGTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGG 200
Query 275 ATGTCCAGATTGGAAAGAAGAAGAGAAAGTCCATCT 310
||||||||||||| |||||||||||||| | |||||
Sbjct 201 ATGTCCAGATTGGTAAGAAGAAGAGAAATTGCATCT 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559962706
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5