BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25400.1 Length=643 Score E Sequences producing significant alignments: (Bits) Value Ahg480039 jgi|Araly1|480039|fgenesh2_kg.3__2740__AT3G25400.1 778 0.0 Ahg356408 jgi|Araly1|356408|fgenesh1_pg.C_scaffold_8000195 278 4e-74 Ahg948553 jgi|Araly1|948553|scaffold_800440.1 167 1e-40 Ahg929216 jgi|Araly1|929216|scaffold_301673.1 156 2e-37 > Ahg480039 jgi|Araly1|480039|fgenesh2_kg.3__2740__AT3G25400.1 Length=566 Score = 778 bits (421), Expect = 0.0 Identities = 523/572 (91%), Gaps = 8/572 (1%) Strand=Plus/Plus Query 45 TAGGGTTTTAGTCTTTTGTGTAATAATTCATTGATCATGAACAAGGGAGAAGAAGGAGGA 104 |||||||| |||||||||||||| || |||| ||| ||||| |||||||||||||||||| Sbjct 1 TAGGGTTTAAGTCTTTTGTGTAAAAAATCATCGATAATGAAAAAGGGAGAAGAAGGAGGA 60 Query 105 GAAGACAAGGAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAA 164 |||| || | | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 GAAG--AA-G-A--GGTTTCTCTTCAAACTCTTAGTAAGAAAATGGATGATTTTGCAAAA 114 Query 165 GCTAGAGATTGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCTATGGTGGGTGAA 224 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 115 GCTAGAGATTGGGAGAAGTATCACAGCCCAAGGAATCTCCTTCTTGCCATGGTGGGTGAA 174 Query 225 GTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGAT 284 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 175 GTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGGGAAGTGGCTAGAGGATGTCCAGAT 234 Query 285 TGGAAAGAAGAAGAGAAAGTCCATCTTGGAGAAGAGTTATCAGATGTTTTGTTGTATTTG 344 |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 235 TGGAAAGAAGAAGAGAAAGTGCATCTTGGAGAAGAGTTATCCGATGTGTTGTTGTATTTG 294 Query 345 GTGAGGCTTTCGGATGCGTGTGGTGTCGATTTAGGCAAAGCCGCTCTGCGCAAGATCGAG 404 |||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| Sbjct 295 GTGAGGCTTTCGGATGCGTGCGGTGTTGATTTAGGCAAAGCGGCTTTGCGCAAGATCGAG 354 Query 405 CTTAATGCTATTAAGTATCCAGTTCCCAAAAAGACTGATGATCATTGTGTTGGTGATGGT 464 |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 355 CTTAATGCTATTAAGTATCCAGCACCCAAACAGACTGATGATCATTGTGTTGGTGATGGT 414 Query 465 GAAGATTCAAGCAGCAAGATTAAGTTGAATGAAGAAAACTAATCTCTCTTATTAGTGGTT 524 ||| |||| ||| |||| |||||||||||||||||| | ||||||||||| ||||||||| Sbjct 415 GAACATTCCAGCGGCAATATTAAGTTGAATGAAGAACATTAATCTCTCTTGTTAGTGGTT 474 Query 525 TTGTGAGTAAGTTT-ATTGTGGGTATTTTCTTGTTATGAAGTAGGAGCATGAT-CAAGAA 582 | |||||| |||| ||| ||||| ||||||||| ||||| | |||||| || ||||| Sbjct 475 TGGTGAGTGTGTTTTATTATGGGTGTTTTCTTGTAATGAATTTGGAGCAAGAGACAAGAT 534 Query 583 CATATAATCTTCGAAGGCCTCTAATTATATTT 614 ||||||||||| |||||||||||||||||||| Sbjct 535 CATATAATCTTTGAAGGCCTCTAATTATATTT 566 > Ahg356408 jgi|Araly1|356408|fgenesh1_pg.C_scaffold_8000195 Length=474 Score = 278 bits (150), Expect = 4e-74 Identities = 167/175 (95%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 114 GAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGAT 173 |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 298 GAAGAGGTTTCTCTTGAAACTTTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGAT 357 Query 174 TGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCT-ATGGTGGGTGAAGTGGGAGA 232 ||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||| Sbjct 358 TGGGAGAAGTATCACAGCCCAAGAAATCTCCTTCTTG-TGATGGTGGGTGAAGTGGGAGA 416 Query 233 GCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGATTGG 287 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 417 GCTATCAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGGATGTCCAGATTGG 471 > Ahg948553 jgi|Araly1|948553|scaffold_800440.1 Length=476 Score = 167 bits (90), Expect = 1e-40 Identities = 96/99 (97%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 216 GTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGA 275 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 349 GTGGGTGAAGTGGGAGAGCTATTAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGGA 408 Query 276 TGTCCAGATTGGAAAGAAGAAGAGAAAGTCCATCTTGGA 314 ||||||||||||||||||||||||||||| ||||||||| Sbjct 409 TGTCCAGATTGGAAAGAAGAAGAGAAAGTGCATCTTGGA 447 > Ahg929216 jgi|Araly1|929216|scaffold_301673.1 Length=236 Score = 156 bits (84), Expect = 2e-37 Identities = 92/96 (96%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 215 GGTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGG 274 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 141 GGTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGG 200 Query 275 ATGTCCAGATTGGAAAGAAGAAGAGAAAGTCCATCT 310 ||||||||||||| |||||||||||||| | ||||| Sbjct 201 ATGTCCAGATTGGTAAGAAGAAGAGAAATTGCATCT 236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559962706 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5