BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25410.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480040 jgi|Araly1|480040|fgenesh2_kg.3__2741__AT3G25410.1 2314 0.0
> Ahg480040 jgi|Araly1|480040|fgenesh2_kg.3__2741__AT3G25410.1
Length=1590
Score = 2314 bits (1253), Expect = 0.0
Identities = 1491/1601 (93%), Gaps = 36/1601 (2%)
Strand=Plus/Plus
Query 68 TCCACGGCGTCATTTCACGGTGGCGCTTCACC-TCTCTCCGTCACCTACTCTCCTAAAAA 126
||||||||| |||||||||| |||||||| || || ||||||| |||||||||||||||
Sbjct 23 TCCACGGCGCCATTTCACGGCGGCGCTTCTCCTTC-CTCCGTCGTCTACTCTCCTAAAAA 81
Query 127 TCCAATCTTTACAAAATCCAGACCAATATAGA-AATGACTTTAATCGCTTCTCTGTCTCT 185
||||| ||||||||||| |||| ||| | ||| ||||||||||||||||||| |||||||
Sbjct 82 TCCAACCTTTACAAAATTCAGA-CAA-AAAGAGAATGACTTTAATCGCTTCTTTGTCTCT 139
Query 186 CCCACCACCAGCTATACAAAGACAATCACTTTCTGAATTTCATAATCTTCCCGCTAAATC 245
||||||||||||||||||||||||||||||||| | | |||| | | |
Sbjct 140 CCCACCACCAGCTATACAAAGACAATCACTTTC------T-A-AATC-T----C---A-G 182
Query 246 TCAATCCTTCAATTGTCAATTCCGGTCTTCTAGTTCACCTTTATCTTCTCTCCATTCTTC 305
| | |||||||||||||| ||||||||||||||| || | |||||||| ||||||||
Sbjct 183 T--GT--TTCAATTGTCAATTACGGTCTTCTAGTTCATCTCTCTCTTCTCTTCATTCTTC 238
Query 306 ATCGCTTAGTAACTTTCTAGATTTTAGACTAAGGCGGAGAAACAGCGGATTGGTTCCAGT 365
|||||||||||| |||||||||||||||| | | ||||||||| ||||||| || |||||
Sbjct 239 ATCGCTTAGTAAATTTCTAGATTTTAGACCACGACGGAGAAACGGCGGATTAGTACCAGT 298
Query 366 GGTGGCGTGTTCAACGACGCCGTTTATGGGCAGAGTTGGATTACATTGGAGAGATGGGAA 425
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 GGTGGCGTGTTCAACGACGCCGTTTATGGGTAGAGTTGGATTACATTGGAGAGATGGGAA 358
Query 426 TATGTCTCTGTTATCGTTTTGTGGTGGAACTGATGTTACAGAGAAAGCTGATTCGTCTCA 485
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 TATGTCTCTGTTATCGTTTTGTGGTGGAACTGATGTTACGGAGAAAGCTGATTCGTCTCA 418
Query 486 GTTTTGGTCTGCTTTGCTTCCATTTGTTGTTGCTCTCACTGCCGTTGCTGCTCTCTCTTA 545
||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| |||
Sbjct 419 GTTTTGGTCTGCTTTGCTTCCGTTTGTCGTCGCTCTCACCGCCGTTGCTGCTCTCTATTA 478
Query 546 CCCACCTAGTTTCACTTGGGTATCTAAAGACCTCTATGCTCCTGCTCTTGGAGGGATTAT 605
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 CCCACCTAGTTTCACTTGGGTATCTAAAGAACTCTATGCTCCTGCTCTTGGAGGGATTAT 538
Query 606 GTTATCTATTGGAATTCAGCTTTCAG-TTGACGATTTTGCTCTTGCATTCAAAAGACCAG 664
||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 539 GTTATCTATCGGAATTCAGCTTTC-GATTGACGATTTTGCTCTTGCATTCAAAAGACCAG 597
Query 665 TGCCGTTATCTGTTGGGTTTGTTGCTCAGTACGTTTTGAAACCGCTTCTCGGGGTTTTAG 724
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 598 TGCCGTTATCTGTTGGGTTTGTTGCTCAGTATGTTTTAAAACCGCTTCTCGGGGTTTTAG 657
Query 725 TTGCTAATGCATTTGGGATGCCGAGGACCTTCTACGCTGGTTTTATACTCACGTGTTGTG 784
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TTGCTAATGCCTTTGGGATGCCGAGGACCTTCTACGCTGGTTTTGTACTCACGTGTTGTG 717
Query 785 TGGCTGGGGCTCAGTTGTCTAGTTACGCGAGTTCTCTGAGTAAAGCTGATGTGGCCATGA 844
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TGGCGGGGGCTCAGTTGTCTAGTTACGCGAGTTCTCTGAGTAAAGCAGATGTGGCCATGA 777
Query 845 GCATTCTTCTCACTAGTTCTACAACTATTGCTTCTGTAATCTTTACACCTTTGCTTAGTG 904
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 778 GCATTCTTCTCACTAGTTCTACTACTATTGCATCTGTAATCTTTACGCCTTTGCTAAGTG 837
Query 905 GTCTTCTAATTGGATCAGTAGTTCCTGTTGATGCAGTTGCCATGTCGAAGTCTATACTTC 964
||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 838 GTCTTCTGATTGGGTCGGTAGTTCCTGTTGATGCAGTTGCCATGTCCAAGTCCATACTTC 897
Query 965 AGGTGGTACTTGTTCCAATCACTCTTGGCCTTGTGTTAAATACTTATGCGAAGCCTGTGG 1024
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGGTGGTGCTTGTTCCAGTCACTCTTGGCCTTGTGTTAAATACTTATGCGAAGCCTGTGG 957
Query 1025 TCACTCTTCTTCAACCTGTGATGCCGTTTGTTGCTATGGTATGCACTTCGTTGTGCATTG 1084
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 TCACTCTTCTTCAACCTGTGATGCCGTTTGTTGCTATGGTATGCACTTCATTGTGCATTG 1017
Query 1085 GAAGCCCACTTTCGATTAATCGCAGTCAGATTCTGTCAGCTGAAGGTCTTGGATTGATTG 1144
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1018 GAAGCCCACTTTCGATAAATCGCAGTCAGATTCTGTCAGCTGAAGGTCTCGGATTGATTG 1077
Query 1145 TTCCAATTGTTACATTCCATGCCGTAGCATTTGCCTTAGGATATTGGTTCTCTAAGATCC 1204
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 1078 TTCCAATTGTTACATTCCATGCCATAGCATTTGTCTTGGGATATTGGTTCTCTAAGATCC 1137
Query 1205 CAGGCTTACGACAAGAGGAAGAAGTAAGCCGGACTATCTCCCTTTGCACGGGAATGCAAA 1264
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1138 CAGGCTTACGGCAAGAGGAAGAAGTTAGCCGGACTATCTCCCTTTGCACGGGAATGCAGA 1197
Query 1265 GCTCCACATTAGCCGGGCTTCTTGCAAGCCAGTTCCTTGGTAGCAGCCAAGCCGTGCCAG 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GCTCCACATTAGCCGGGCTTCTTGCAAGCCAGTTCCTTGGTAGCAGCCAAGCCGTGCCAG 1257
Query 1325 CAGCTTGCTCTGTAGTTGTAATGGCCATAATGGGTCTATGCCTTGCCTCTTTCTGGGGCA 1384
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAGCTTGCTCTGTGGTTGTAATGGCCATAATGGGTCTATGCCTTGCCTCTTTCTGGGGCA 1317
Query 1385 ATGGGTTTCGAATCAGGGACGTTCTATCGCTATCAACACCGCAAAGCACTGGCTACACCG 1444
||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||
Sbjct 1318 ATGGGTTTCGAATCAGGGATTTTCTGTCGCTATCAACCCCGCAAAGCAGTGGCTACACCG 1377
Query 1445 CTGAATCATGAGCAAGAATTCAGCAGCAACAAACCTGTAAAGCAAGGGAACCACACCTTG 1504
||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||
Sbjct 1378 CTGAATCATGAGCAATA-TTCAGCCGCAACAAACCTGTAAAGCAAGGGAACC-----TTG 1431
Query 1505 GGACATTGATTGCACAAGTACTTTCCGGTTTTTAATTTGATGTACAAACAGCATTTGGGA 1564
|||||||||| ||| || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1432 GGACATTGATGGCA-AAC-ACTTTCCGGTTTTTGATTTGTTGTACAAACAGCATTTGGGA 1489
Query 1565 AGTAAAGATAAGGTTTAGAGGGGATGGTATAGGTAGTGTAGACAAAATGGTATTCATCAA 1624
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1490 AGTTAAGATAAGGTTTAGAGGGGATGGTATAGGTAGTGTAGACAAAATGGTGTTCATCAA 1549
Query 1625 TCATCTTGTATGTAGTCTGCTAATTCATGGTATAAAAGGTT 1665
|||||||||||||| |||||||||||||||||||||| |||
Sbjct 1550 TCATCTTGTATGTAATCTGCTAATTCATGGTATAAAAAGTT 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5