BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25420.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480041 jgi|Araly1|480041|fgenesh2_kg.3__2742__AT3G25420.1 2379 0.0
> Ahg480041 jgi|Araly1|480041|fgenesh2_kg.3__2742__AT3G25420.1
Length=1546
Score = 2379 bits (1288), Expect = 0.0
Identities = 1465/1549 (95%), Gaps = 18/1549 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGGTTAGTAGAAGCTATCATTGCTTCGATATTATTGTCTTTGTGTTTTACAATA 60
|||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1 ATGGGTTGGTTAGTGGAAGCTATCGTTGCTTCGATATTGTTGTCTTTGTGTTTTGCAATA 60
Query 61 ACAAAGTCAGCTCCAAAATCTGCTCTCATTACC-AATCTTCCTGGTTTCAACGGCACTTT 119
||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || ||
Sbjct 61 ACAGAGTCAGCTCCAAAATCTGCTCTCATTACCGAA-CTTCCTGGTTTCAACGGAACGTT 119
Query 120 TCCATCTAAACACTATGCCGGGTATGTGGCAATAGATAAACATCGTAATAAGAATCTATG 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 120 TCCATCTAAACACTATGCCGGGTATGTGGCAATAGATAAACATCGTAACAAGAATTTATG 179
Query 180 GTATTACTTTGTGGAATCTGAGAGAAATGCTTCGGTAGATCCAGTTGTGCTTTGGCTTAA 239
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GTATTACTTTGTGGAGTCTGAGAGAAATGCTTCAGTAGATCCAGTTGTGCTTTGGCTTAA 239
Query 240 TGGTGGTCCAGGTTGCTCTAGCATGGATGGATTTGTCTACGAGCACGGTCCATTCAATTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTGGTCCAGGTTGCTCTAGCATGGATGGATTTGTCTACGAGCACGGTCCATTCAATTT 299
Query 300 CGAACCAAAAAAGAAGAA-CTCACATCTTTTGCATCTCAATCCTTATAGTTGGTCCAAGG 358
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 CGAACCAAAAAAGA-GAAACTCACATCTTCTGCATCTCAATCCTTATAGTTGGTCCAAGG 358
Query 359 TGTCCAACATCATATACCTTGACTCTCCAGTTGGTGTGGGATTCTCTTACTCAAATGACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TGTCCAACATCATATACCTTGACTCTCCAGTTGGTGTGGGATTCTCTTACTCAAACGACA 418
Query 419 ACGCCGATTATACAACTGATGATACAAAAACCGCGTCTGATACTCACACATTCCTTCTCG 478
||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||||||| |
Sbjct 419 ACGCCGATTATACAACTAATGATACGAAAACCGCGTTTGATTCTCACAGATTCCTTCTTG 478
Query 479 AGTGGTTTAAAATGTTTCCGGAGTTTCAGTCAAATCCGTTCTTTATATCAGGAGAATCAT 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 AGTGGTTTAAAATGTTTCCGGAGTTTCGGTCAAATCCGTTCTTTATATCAGGAGAATCAT 538
Query 539 ATGCTGGTATCTATGTGCCAACTCTTGCGGCCGAGGTTGTCAAAGGTCACAAGAATGTGA 598
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 539 ATGCTGGTATCTATGTGCCAACTCTTGCGGCCCAGGTTGTCAAAGGTCATAAGAATGTGA 598
Query 599 C-A-AA-GCCGGTTATCAACTTCAAGGGATATTTGGTGGGTAATGGTGTTACCGATGAGG 655
| | || |||| ||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 599 CGACAAAGCCGCTTATCAACTTCAAGGGATACTTGGTGGGTAATGGAGTTACTGATGAGG 658
Query 656 TGTTTGATGGTAATGCTCTTGTTCCCTTCACTCATGGCATGGGACTCATCTCTGATGAAC 715
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 659 TGTTTGATGGTAATGCTCTTGTTCCCTTCACACATGGGATGGGACTCATCTCTGATGAAC 718
Query 716 TCTATGAGGAAACTAAATTAGTGTGCAACGGAACATACTATACCGGCGGCCAGTCAGGAG 775
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 719 TCTATGAGGAAACTAAATTAGTGTGCAATGGAACATACTATACCGGCGGCCACTCAGGTG 778
Query 776 TGAGTAAAGAATGTGCTGGCAAACTTAAAACAGTGTCAGATACTGTGAACTTATTGAACT 835
| |||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 779 TAAGTAAAGAATGTGCTGACAAGCTTAAAAAAGTGTCAGATACTGTGAGCTTATTGAACT 838
Query 836 TATATAACATTCTAGAACCGTGCTACCACGGAACATCTCTATCCGCCTTAGATATCGAGT 895
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 839 TATATAACATTCTAGAACCGTGCTACCACGGAACATCTCTATCCGCCCTAGATATTGAGT 898
Query 896 TTCTGCCTAAGAGTCTCCTTACTCTAGGCAAAACAGAAAAGCCAATGGCGGTGAGAAAGA 955
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 TTCTGCCTAAGAGTCTCCTTACTCTAGGCAAAACAGAAAAGCCAATGGCAGTGAGAAAGA 958
Query 956 GAATGTTTGGTCGTGCATGGCCTCTAGGTGCCGTTGTGCGTCCAGGCATTGTACCTAGTT 1015
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 GAATGTTTGGTCGTGCATGGCCTCTAGGGGCCGTTGTGCGTCCAGGCATTGTACCTAGTT 1018
Query 1016 GGTCTCAACTCCTCGCTGGCTTTGGTGTTCCTTGCATTGACGATACAGTTGCGACCAAAT 1075
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGTCTCAACTCCTCGAGGGCTCTGGTGTTCCTTGCATTGACGATACAGTTGCGACCAAAT 1078
Query 1076 GGCTAAACGATCCAGCTGTAAGGAAAGCGGTTCATGCTAAAGAGGTCTCTA-T-TC---A 1130
|||||||||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 1079 GGCTAAACGATCCAGCTGTACGGAAAGCGGTTCATGCTAAAGAGGTCTCTACTCTCTCTA 1138
Query 1131 ---ATT-CATCATATTTCTCTCAATCAGTATTTCGATTGGAAATTGGGAGTTATGTTCAA 1186
||| |||||||||| ||| ||| || ||||||||||||||||| ||||||| ||||
Sbjct 1139 CCCATTTCATCATATTTTTCTTAATAAGCCTTTCGATTGGAAATTGGAAGTTATGCTCAA 1198
Query 1187 GC-AACCTCGAATATAGGCACGACACCGGTAGCATGATCGAATACCATAGAAACCTCACT 1245
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 GCCAAC-TCGAATATAGGCACGACACTGGTAGCATGATCGAATACCATAGAAACCTCACT 1257
Query 1246 CTTAGTGGCTTTCGAGCTCTCATTTTCAGTGGAGATCATGATATGTGTGTACCATATACT 1305
||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 1258 CTTAGTGGCTTTCGAGCTCTCGTTTTCAGCGGAGATCACGATATGTGTGTACCATATACT 1317
Query 1306 GGCTCTGAAGCATGGACTAAGGCAATGGGATACAAAGTGGTTGATGAATGGAGGCCATGG 1365
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1318 GGTTCTGAAGCATGGACTAAGGCAATGGGATACAAAGTGGTTGATGAGTGGAGACCATGG 1377
Query 1366 ATGTCAAATAACCAAGTCGCCGGGTTTACACAAGGGTATGCCAATAATCTCACATTTCTA 1425
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATTTCAAATAACCAAGCCGCCGGGTTTACACAAGGGTATGCCAATAATCTCACATTTCTA 1437
Query 1426 ACCATCAAGGGTGCAGGACATACCGTTCCAGAATACAAACCGCGTGAATCTTTGGACTTC 1485
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 ACCATTAAGGGTGCAGGACATACCGTTCCAGAATACAAACCACGTGAATCTTTGGACTTC 1497
Query 1486 TATAGTCGTTTCCTAGCAGGAGAAAAGATATAGAATTCTCAAGTTCCAT 1534
||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 1498 TATAGTCGTTTTCTAGCAGGAGAAAAGATATAGATTTCTCAAGTTTCAT 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5