BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25420.1 Length=1607 Score E Sequences producing significant alignments: (Bits) Value Ahg480041 jgi|Araly1|480041|fgenesh2_kg.3__2742__AT3G25420.1 2379 0.0 > Ahg480041 jgi|Araly1|480041|fgenesh2_kg.3__2742__AT3G25420.1 Length=1546 Score = 2379 bits (1288), Expect = 0.0 Identities = 1465/1549 (95%), Gaps = 18/1549 (1%) Strand=Plus/Plus Query 1 ATGGGTCGGTTAGTAGAAGCTATCATTGCTTCGATATTATTGTCTTTGTGTTTTACAATA 60 |||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||| Sbjct 1 ATGGGTTGGTTAGTGGAAGCTATCGTTGCTTCGATATTGTTGTCTTTGTGTTTTGCAATA 60 Query 61 ACAAAGTCAGCTCCAAAATCTGCTCTCATTACC-AATCTTCCTGGTTTCAACGGCACTTT 119 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || || Sbjct 61 ACAGAGTCAGCTCCAAAATCTGCTCTCATTACCGAA-CTTCCTGGTTTCAACGGAACGTT 119 Query 120 TCCATCTAAACACTATGCCGGGTATGTGGCAATAGATAAACATCGTAATAAGAATCTATG 179 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 120 TCCATCTAAACACTATGCCGGGTATGTGGCAATAGATAAACATCGTAACAAGAATTTATG 179 Query 180 GTATTACTTTGTGGAATCTGAGAGAAATGCTTCGGTAGATCCAGTTGTGCTTTGGCTTAA 239 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 180 GTATTACTTTGTGGAGTCTGAGAGAAATGCTTCAGTAGATCCAGTTGTGCTTTGGCTTAA 239 Query 240 TGGTGGTCCAGGTTGCTCTAGCATGGATGGATTTGTCTACGAGCACGGTCCATTCAATTT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGGTGGTCCAGGTTGCTCTAGCATGGATGGATTTGTCTACGAGCACGGTCCATTCAATTT 299 Query 300 CGAACCAAAAAAGAAGAA-CTCACATCTTTTGCATCTCAATCCTTATAGTTGGTCCAAGG 358 |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 300 CGAACCAAAAAAGA-GAAACTCACATCTTCTGCATCTCAATCCTTATAGTTGGTCCAAGG 358 Query 359 TGTCCAACATCATATACCTTGACTCTCCAGTTGGTGTGGGATTCTCTTACTCAAATGACA 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 359 TGTCCAACATCATATACCTTGACTCTCCAGTTGGTGTGGGATTCTCTTACTCAAACGACA 418 Query 419 ACGCCGATTATACAACTGATGATACAAAAACCGCGTCTGATACTCACACATTCCTTCTCG 478 ||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||||||| | Sbjct 419 ACGCCGATTATACAACTAATGATACGAAAACCGCGTTTGATTCTCACAGATTCCTTCTTG 478 Query 479 AGTGGTTTAAAATGTTTCCGGAGTTTCAGTCAAATCCGTTCTTTATATCAGGAGAATCAT 538 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 479 AGTGGTTTAAAATGTTTCCGGAGTTTCGGTCAAATCCGTTCTTTATATCAGGAGAATCAT 538 Query 539 ATGCTGGTATCTATGTGCCAACTCTTGCGGCCGAGGTTGTCAAAGGTCACAAGAATGTGA 598 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 539 ATGCTGGTATCTATGTGCCAACTCTTGCGGCCCAGGTTGTCAAAGGTCATAAGAATGTGA 598 Query 599 C-A-AA-GCCGGTTATCAACTTCAAGGGATATTTGGTGGGTAATGGTGTTACCGATGAGG 655 | | || |||| ||||||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 599 CGACAAAGCCGCTTATCAACTTCAAGGGATACTTGGTGGGTAATGGAGTTACTGATGAGG 658 Query 656 TGTTTGATGGTAATGCTCTTGTTCCCTTCACTCATGGCATGGGACTCATCTCTGATGAAC 715 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 659 TGTTTGATGGTAATGCTCTTGTTCCCTTCACACATGGGATGGGACTCATCTCTGATGAAC 718 Query 716 TCTATGAGGAAACTAAATTAGTGTGCAACGGAACATACTATACCGGCGGCCAGTCAGGAG 775 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | Sbjct 719 TCTATGAGGAAACTAAATTAGTGTGCAATGGAACATACTATACCGGCGGCCACTCAGGTG 778 Query 776 TGAGTAAAGAATGTGCTGGCAAACTTAAAACAGTGTCAGATACTGTGAACTTATTGAACT 835 | |||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 779 TAAGTAAAGAATGTGCTGACAAGCTTAAAAAAGTGTCAGATACTGTGAGCTTATTGAACT 838 Query 836 TATATAACATTCTAGAACCGTGCTACCACGGAACATCTCTATCCGCCTTAGATATCGAGT 895 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 839 TATATAACATTCTAGAACCGTGCTACCACGGAACATCTCTATCCGCCCTAGATATTGAGT 898 Query 896 TTCTGCCTAAGAGTCTCCTTACTCTAGGCAAAACAGAAAAGCCAATGGCGGTGAGAAAGA 955 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 899 TTCTGCCTAAGAGTCTCCTTACTCTAGGCAAAACAGAAAAGCCAATGGCAGTGAGAAAGA 958 Query 956 GAATGTTTGGTCGTGCATGGCCTCTAGGTGCCGTTGTGCGTCCAGGCATTGTACCTAGTT 1015 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 959 GAATGTTTGGTCGTGCATGGCCTCTAGGGGCCGTTGTGCGTCCAGGCATTGTACCTAGTT 1018 Query 1016 GGTCTCAACTCCTCGCTGGCTTTGGTGTTCCTTGCATTGACGATACAGTTGCGACCAAAT 1075 ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1019 GGTCTCAACTCCTCGAGGGCTCTGGTGTTCCTTGCATTGACGATACAGTTGCGACCAAAT 1078 Query 1076 GGCTAAACGATCCAGCTGTAAGGAAAGCGGTTCATGCTAAAGAGGTCTCTA-T-TC---A 1130 |||||||||||||||||||| |||||||||||||||||||||||||||||| | || | Sbjct 1079 GGCTAAACGATCCAGCTGTACGGAAAGCGGTTCATGCTAAAGAGGTCTCTACTCTCTCTA 1138 Query 1131 ---ATT-CATCATATTTCTCTCAATCAGTATTTCGATTGGAAATTGGGAGTTATGTTCAA 1186 ||| |||||||||| ||| ||| || ||||||||||||||||| ||||||| |||| Sbjct 1139 CCCATTTCATCATATTTTTCTTAATAAGCCTTTCGATTGGAAATTGGAAGTTATGCTCAA 1198 Query 1187 GC-AACCTCGAATATAGGCACGACACCGGTAGCATGATCGAATACCATAGAAACCTCACT 1245 || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1199 GCCAAC-TCGAATATAGGCACGACACTGGTAGCATGATCGAATACCATAGAAACCTCACT 1257 Query 1246 CTTAGTGGCTTTCGAGCTCTCATTTTCAGTGGAGATCATGATATGTGTGTACCATATACT 1305 ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 1258 CTTAGTGGCTTTCGAGCTCTCGTTTTCAGCGGAGATCACGATATGTGTGTACCATATACT 1317 Query 1306 GGCTCTGAAGCATGGACTAAGGCAATGGGATACAAAGTGGTTGATGAATGGAGGCCATGG 1365 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1318 GGTTCTGAAGCATGGACTAAGGCAATGGGATACAAAGTGGTTGATGAGTGGAGACCATGG 1377 Query 1366 ATGTCAAATAACCAAGTCGCCGGGTTTACACAAGGGTATGCCAATAATCTCACATTTCTA 1425 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ATTTCAAATAACCAAGCCGCCGGGTTTACACAAGGGTATGCCAATAATCTCACATTTCTA 1437 Query 1426 ACCATCAAGGGTGCAGGACATACCGTTCCAGAATACAAACCGCGTGAATCTTTGGACTTC 1485 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1438 ACCATTAAGGGTGCAGGACATACCGTTCCAGAATACAAACCACGTGAATCTTTGGACTTC 1497 Query 1486 TATAGTCGTTTCCTAGCAGGAGAAAAGATATAGAATTCTCAAGTTCCAT 1534 ||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 1498 TATAGTCGTTTTCTAGCAGGAGAAAAGATATAGATTTCTCAAGTTTCAT 1546 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60220677345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5