BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25430.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905698 jgi|Araly1|905698|Al_scaffold_0003_2826 2222 0.0
> Ahg905698 jgi|Araly1|905698|Al_scaffold_0003_2826
Length=3168
Score = 2222 bits (1203), Expect = 0.0
Identities = 1341/1409 (95%), Gaps = 4/1409 (0%)
Strand=Plus/Plus
Query 19 ATGCAAAGGCGCTTCCTTTCGTCAATCTCCGCCACCGCCGGCAATACTAAAACCCTAAAT 78
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGCAAAGACGCTTCCTTTCGTCAATCTCCGCCACCGCCGGCAATACTAAAACCGTAAAT 60
Query 79 CAAGGAAGATGGAGTGTAAAGCAAGTGAAAAAATCCAACTTTCATGTAACTCTCGACGAG 138
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 61 CAAGGAAGATGGAGTGTGAAGCAAGTGAAAAAATCAAACTTTCATGTAACCCTCGACGAG 120
Query 139 ATTCGTACTTCCATCGATTCATCAGACTTCATAGCTCTCTCATTACAAAACACTGGCTCA 198
||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 121 ATTCGAACTTCCATCGATTCATCAGACTTCATAGCTCTCTCACTACAAAACACCGGCTCA 180
Query 199 TACGCCGCCGCGTGGCACCGTGTCTCCGCCATTGACACGCCGCAAACTAGCTACTTAAAA 258
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 TACGCCGCCGCGTGGCACCGTGTCTCCGCCATTGACACGCCGCAAACAAGCTACTTTAAA 240
Query 259 GCTAAATACGCAGCCGAACGTTACCAGATTCTCCAGTTCGCTCTCTGCCCTTTCTCTCTT 318
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTAAATACGCCGCCGAACGTTACCAGATTCTCCAGTTCGCTCTCTGCCCTTTCTCTCTT 300
Query 319 CAAGGCTCTAAACTCACTGTTCATCCATATAACTTTCATTTGTTTCCTCGTGATGAATTG 378
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 CACGGCTCTAAACTCACTGTTCACCCATATAACTTCCATTTGTTTCCTCGTGATGAATTG 360
Query 379 AAGTGTGGTATGCCTTCTTATAGCTTCTCTTGTCAAGCTTCACGTTTAACAGCTATGGCT 438
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTGTGGGATGCCTTCTTATAGCTTCTCTTGTCAAGCTTCACGTTTAACAGCTATGGCT 420
Query 439 AGAGAAGGATTTGATTTCAACATTTGCATCTATGAAGGAATCTCATACTTATCTAGAGCA 498
|||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 421 AGAGAAGGATTTGACTTCAACACTTGTATCTATGAAGGAATTTCATACTTATCTAGAGCA 480
Query 499 CAAGAGTCTGCATCGAAGTTTCTTTCCGAGAATCCGATATTAGCTGATTC-TGTTACTGT 557
||||||||||| ||||||||||| |||| ||||||||||||||||||| | | | | |||
Sbjct 481 CAAGAGTCTGCGTCGAAGTTTCTCTCCGGGAATCCGATATTAGCTGAT-CATATCAGTGT 539
Query 558 ATCTTCTTCTCCAGCTACTGTAGCTGATACTGTCTTTGTTGGAAGGATTAGGTCACGTGT 617
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 540 ATCTTCTTCTCCAGCTACTGTAGCTGATACCGTCTTTGTTGGGAGGATTAGGTCACGTGT 599
Query 618 CAAGAATTGGAGACAGTCTTGTATAGACTCGGGTTCAAAGACAGGAGATGATGATTTGGT 677
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 CAAGAATTGGAGACAATCTTGTATAGACTCGGGTTCGAAGACAGGAGATGATGATTTGGT 659
Query 678 GAGCTCTTTGAGAAGGCTGGTGTTGGGGAGTGAGCAGTATGGTTCAAGGCTGTGTTTGAC 737
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGCTCTTTGAGAAGACTGGTGTTGGGGAGTGAGCAGTATGGTTCAAGGCTGTGTTTGAC 719
Query 738 TATTGATGTTTGCAGTGAGCGTCAAGTGCAACTTATCCTAGAGATGTTGACTGAGTTCTC 797
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATTGATGTTTGCAGTGAGCGTCAAGTGCAACTTATCCTAGAGATGTTGACTGAGTTCTC 779
Query 798 TGATGATGTTGTCCCTCTACTGGTCGCTTCAAAGAGCAGAGGAACACAAGCTGTTCGTAC 857
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 780 CGATGATGTTGTCCCTCTACTCGTCGCTTCTAAGAGCAGAGGAACACAAGCAGTTCGTAC 839
Query 858 TGTCTTTATGAGTTCGAAGGAGGACAAGGATCTTTTTAAGAGAGAGCTTAAAGATCTTGA 917
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 GGTCTTTATGAGTTCGAAGGAGGACAAGGATCTTTTTAAGAGAGAGCTTCAAGATCTTGA 899
Query 918 AAAGGAAGAAAACAGGCGAGTTCGTGGCTTTCGGGAAGTGGTCGATTTTATTTCTTCTTC 977
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 AAACGAAGAAAACAGGCGCGTTCGTGGCTTTCGGGAAGTGGTCGATTTGATTTCTTCTTC 959
Query 978 ACAGAAACCTGTCGTTTCCCAGAATTATCTTAGCGATTTTACTTCCATTCATGCTAAATT 1037
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 960 ACAGAAACCTGTCGTTTCCCAGAATTATCTTAGCGACTTTACTTCCATTCATGCCAAATT 1019
Query 1038 CCTTGGTCCTCTACCTTCAAATGTGGATGACTTCAGCAGTTCACTGAGCTCAGCATTTCC 1097
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1020 CCTGGGTCCTCTACCTTCAAATTTGGATGACTTCAGCAGTTCACTGAGCTCAGCTTTTCC 1079
Query 1098 CAATGTTGTGGATCTCAGTCAGTTCATGAAAGAAATTAGTCCCTTAAGTAATATAAGTAA 1157
||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 1080 CAATGTTGTGGATCTGAGTCAGTTCATGAAAAAAATTAGTCCCTTAAGCAATATAAGCAA 1139
Query 1158 TCTACCTGCAGCTATGTCCTCCTTGAATAGGTTCTTTGCACCTGTGGATGTAGAAGTAGC 1217
|||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||
Sbjct 1140 TCTACCTGCAGCTATGTCCTCCTTGAATCGGTTCTTTGTACCTGTGGATGTGGAAGTGGC 1199
Query 1218 AAATCAAGGTTGTCCGGTCAAATTAGACGA-AGGCCATCAGAGTCACGGGCAGAATGCTG 1276
|||||||| ||||||||||||||| |||| || ||||||||||||||||||||| ||||
Sbjct 1200 TAATCAAGGCTGTCCGGTCAAATTAAACGAGAG-CCATCAGAGTCACGGGCAGAAGGCTG 1258
Query 1277 TGATGATATCTCAGCTCTTTGCAAAACTGTGTACCATACAGAAATCAGATCTATCAACTA 1336
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 1259 TGATGATATCTCAGCTCTTTGCAAAACTTTGTACCATACAGAAATCAGATCAATCGACTG 1318
Query 1337 TCCAATCAAATGAAGATTTCCAAGCTTTGGCTTCTGATGAACATGCAAATTCTGTCACCT 1396
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCCAATCAAATAAAGATTTCCAAGCTTTGGCTTCTGATGAACATGCAAATTCTGTCACCT 1378
Query 1397 CTTGCTCTAAAAACGCAGGTGATGAAAAT 1425
|||||||||||||||| || |||||||||
Sbjct 1379 CTTGCTCTAAAAACGCTGGCGATGAAAAT 1407
Score = 544 bits (294), Expect = 1e-153
Identities = 356/386 (92%), Gaps = 3/386 (1%)
Strand=Plus/Plus
Query 1455 AGTAAGCTCTGAGAACTTGGTGTTCATATGGGGGTTAGGGAAAAAGATGACAGCTGCAAA 1514
|||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct 1408 AGTAAGCTCTGAGAACTTGGTG-TCATCTGGGGGTTAGCAAAAAAGATGACAGCTGCAAA 1466
Query 1515 GCTGAAGAATGTCCTACAAAAGTCACACCCCGTCTTCGCG-AGAGAGTTTGATGTTAAGT 1573
|||||||||||| ||||||||||||||||||| || ||| | ||||||||||||||| |
Sbjct 1467 ACTGAAGAATGTCTTACAAAAGTCACACCCCGTGTTTGCGCA-AGAGTTTGATGTTAAAT 1525
Query 1574 ACATAGACCGGAGCTCTGCTATTTTGGTGTTTTGGGAGTCAGGTCCTTCAGAGACTTTCC 1633
|| ||||| |||||| ||||||| |||| ||||||||||||||||| ||| | |||||||
Sbjct 1526 ACTTAGACGGGAGCTGTGCTATTGTGGTATTTTGGGAGTCAGGTCCCTCAAAAACTTTCC 1585
Query 1634 TCAGTGCGGTCAACAATGAAGAGCAACTTGATGGTTCATTAAGAGAGATGGTTGCAGAAG 1693
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1586 TCAGTGCGGTTAACAATGAAGAGCAACTTGATGGTTCCTTAAGAGAGATGGTTGCACAAG 1645
Query 1694 GGCTAAGAGGGGCAGGTTACGAGACTTACAAGAGAGCTTGTAGATTAGGCTTCTGGGAGG 1753
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1646 GTCTAAGAGCTTCAGGTTACGAGACTTACAAGAGAGCATGTAGATTAGGCTTCTGGGAGG 1705
Query 1754 CTGACTTGGCGGAATCTTTAGACAAAGCATTGGAATCTTCAGATACCGACCCTGATTCGG 1813
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1706 CTGACTTGGCGGAATCTTTAGACAAAGCATTGGAATCTTCAGATACCGATCCTGATTCCG 1765
Query 1814 ACACTAAACCATCAGAGATTGATTGG 1839
|||| |||||||||||||||||||||
Sbjct 1766 ACACCAAACCATCAGAGATTGATTGG 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5