BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25470.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930707 jgi|Araly1|930707|scaffold_303164.1 1482 0.0
> Ahg930707 jgi|Araly1|930707|scaffold_303164.1
Length=949
Score = 1482 bits (802), Expect = 0.0
Identities = 900/948 (95%), Gaps = 4/948 (0%)
Strand=Plus/Plus
Query 102 CCAAGGAAG-AAGTAGAAAGATGGGATTTCATGTTCTTAGACCTCCCATAGCTTTACGCA 160
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CCAAGG-AGAAAGTAGTAAGATGGGATTTCATGTTCTTAGACCTCCCATAGCTTTACGCA 60
Query 161 GCTCTCTCCTCGGCTTCTTATCCAAATCACACAATCCTCTTCTCCCCGGGAGATGGGTTC 220
| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 61 GTTCTCTCCTCGGCTTCTTATCCAAATCTCACAATCCTCTTCTCTCTGGGAGATGGGTT- 119
Query 221 A-AGCTGGAGAATGCAGTACCATGAGATGTTTTGCTTCTGCTACTCGTGGCaaaaacaaa 279
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 AGAGCCGGAGAATGCAGTACCATGAGATGTTTTGCTTCTGCTACTCGTGGGAAAAACAAA 179
Query 280 aaaCAGAGACTAGATGAGGCATGTGTTGAAAGGTTTAACGAATACAGTCGCACACTAATA 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACAGAGACTAGATGAGGCATGTGTTGAAAGGTTTAACGAATACAGTCGCACACTAATA 239
Query 340 CAATCGTGGATTATGCAAGGCAAAGTTCTTGTGGATGGGAGAAGAGTTATTAAAGCTGGA 399
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAATCATGGATCATACAAGGCAAAGTTCTTGTGGATGGGAGAAGAGTTATTAAAGCTGGA 299
Query 400 ATGCCTGTATCTACTACTGCAGCTATAAAGATCACAGCTGAGGTTCCAAAATTTGTATGT 459
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGCCTGTATCGAATACTGCAGCTATAAAGATCACAGCTGAGGTTCCAAAATTTGTATGT 359
Query 460 AGAGGTGGACTCAAGCTGGAAGCTGCACTTGAGAAGCTAGATGTTGATGTTTCTGAGAAA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGTGGACTCAAGCTGGAAGCTGCACTTGAGAAGCTAGATGTTGATGTTTCTGAGAAA 419
Query 520 GTAGTTCTTGATGCAGGACTTTCTACTGGAGGGTTTACGGATTGTTTGCTACGTTATGGT 579
|||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 420 GTAGTTCTTGATTCAGGACTTTCTACAGGAGGGTTTACGGATTGTTTGCTTCGATATGGT 479
Query 580 GCTGCTCATGTTTATGGCGTAGATGTTGGTTACGGTCAGGTAGCTGACAAAATTCGCAAT 639
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 480 GCAGCTCATGTTTATGGCGTAGATGTTGGTTACGGTCAGGTAGCTGATAAAATCCGCAAT 539
Query 640 GATAAGAAAGTGACTGTTATAGAAAGGACAAATCTGAGATACCTCCCAGGACTCCCACAA 699
|||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 540 GATAAGCGAGTGACCGTTATAGAAAGAACAAATCTGAGATACCTCCCTGGACTCCCACAA 599
Query 700 AAAGTCGATGTAGTGACGCTTGACCTCTCTTTCATTTCCATTCTTAAGGTGATGCCAGCT 759
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 600 AAAGTCGATGTAGTGACTCTTGACCTCTCGTTCATTTCTATTCTAAAGGTGATGCCAGCT 659
Query 760 ATTATGAATGTGATGAAAGAAGATGCGACTTTAGTTACCCTTGTTAAACCCCAATTTGAA 819
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 660 ATTATGAATGTGATGAAAGAAGATGCAACTTTAGTTACTCTTGTTAAACCCCAATTTGAA 719
Query 820 GCTCGAAGACAACAGGTCGGGAAGGGTGGCATAGTGAGAGATCCCGAAGTACATCAAGAG 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 GCTCGAAGACAACAGGTCGGGAAGGGTGGCATAGTGAGAGATCCCGAAGTACATCAGGAG 779
Query 880 GTTCTTGAGAAGATAATAAACGGTGTTGAGCGCTATGGATTTACCAACAAAGGCTTTATC 939
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTCTTGAGAAGATAATAAATGGTGTTGAGCGCTATGGATTTACCAACAAAGGCTTTATC 839
Query 940 GAATCTCCCATAAAGGGCGCAGACGGAAACATAGAGTTCTTGGCTTGCTTTAATCGAGGG 999
|||||||||||||||||||| || ||||| ||||||||||||| |||||| || ||||||
Sbjct 840 GAATCTCCCATAAAGGGCGCTGAGGGAAATATAGAGTTCTTGGTTTGCTTCAACCGAGGG 899
Query 1000 ACAGTAAAACCTGAAGCCGAAGAATAGTAGACTTATATTCCATTACTG 1047
||||||||||| |||| ||||||||| ||||||| |||||||| |||
Sbjct 900 ACAGTAAAACCCGAAGGCGAAGAATACTAGACTTGCATTCCATTGCTG 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5