BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25480.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480047 jgi|Araly1|480047|fgenesh2_kg.3__2748__AT3G25480.1 1421 0.0
> Ahg480047 jgi|Araly1|480047|fgenesh2_kg.3__2748__AT3G25480.1
Length=997
Score = 1421 bits (769), Expect = 0.0
Identities = 931/1008 (92%), Gaps = 15/1008 (1%)
Strand=Plus/Plus
Query 3 ATTACCAATGACGTCTCTTCCAATAATCCTCGCATCCTCTCCACTGCGAAACCTAACCAA 62
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATTACTAATGACGTCTCTTCCGATAATCCTCGCATCCTCTCCACTGCGAAACCTAACAAA 60
Query 63 ACCTTGTTCAACTTCTCAAATCCCAAAACCCATTCAAAATTCTA-CAAAACAACCTCCAA 121
|||||||||||||||||||| ||||||||||| || |||||| | |||||||||||||||
Sbjct 61 ACCTTGTTCAACTTCTCAAACCCCAAAACCCAATCCAAATTC-ACCAAAACAACCTCCAA 119
Query 122 TACATCTCCTAACCAAAACCAATCTCTCTGTAACCATTTCCCAACTAATTATCACTTCCC 181
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||
Sbjct 120 TACATCTCCTAACCAAAACCCATCTCTCTGTAACCATTTCCCAACTCATCATCACATCCC 179
Query 182 CTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTTCTGGAAAAATCG 241
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 180 CTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTCCTGGAAGAATCG 239
Query 242 ATTTAGAGTCAATTTTGGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAG 301
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATTTGGAGTCAATTTTAGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAG 299
Query 302 CGGGATGTACTTTTACCTATCTTGTTGTTTATCCAGCTGTGATGTTTTACTTGAGGAAGT 361
||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 300 CGGGATGTACTTTTATCTATCTTGTGGTTTATCCATCTGTGATTTTTTACTTGAGGAAGT 359
Query 362 ATAAACCAATATCCGCCATGAACGCGTTTCGTAAGCTTAAGAATG-AATCTGATTCTCAG 420
|||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||
Sbjct 360 ATAAACCAATATCCGCCATGAATGCGTTTCGTAAGCTTAAGA-TGGAATCTGATTCGCAG 418
Query 421 CTTTTGGATATTAGAGATG-TCAAGACTTTGGCTTTGTTAGCATCACCGAATCTTAAGTT 479
||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||
Sbjct 419 CTTTTGGATATTAGAGATGAT-AAGACTTTGGCTACATTGGCATCACCGAATCTTAAGTT 477
Query 480 TTTGGGTAAGAGTTCTGTTCAGGTTCCGTTTAGTGAGAATGATGAAGAAGGGTTTTTGAC 539
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 478 TTTGGGTAAGAGTTCTGTTCAAGTTCCGTTTAGTGAGAATGATGAAGATGGGTTCTTGAA 537
Query 540 GAAAGTTAAAGGAAGCTTCTCTGATGCTGAGAATACAGTTGTTTGTGTTCTTGATAATTT 599
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 538 GAAAGTTAAAGGAAGCTTCTTTGACCCTGAAAATACAGTTGTTTGTGTTCTTGATAATTT 597
Query 600 TGATGGTAACTCGTCGAAAGTAGCTGAATTGCTGATCAAGAATGGTTTCAAAGAGGCTTA 659
||||||||| ||||||||||| || |||||| |||||||||||||||||||||| |||||
Sbjct 598 TGATGGTAATTCGTCGAAAGTGGCGGAATTGTTGATCAAGAATGGTTTCAAAGAAGCTTA 657
Query 660 TTATATTAGAGGCGGCGCGAGAGGGAAGAATGGTTGGTTGGCTATTCAAGAAGAGCTTTT 719
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 TTATATTAGAGGTGGCGCGAGAGGGAAGAATGGTTGGTTGGCGATTCAAGAAGAGCTTTT 717
Query 720 GCCTCCACCGGTGCATATGTACACTGCGAAAAACGTAAAATCTTCAAACAACAATGAAGC 779
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 718 GCCTCCACCGGTGCATATGTATACTGCGAAAAACGTAAAATCTTCAACCAACAATGAGGC 777
Query 780 GTCTGTTGTTGGAACTGAGAACTAGTTCAAGAACATAGCGTAATGTGGCAGGACATGGTA 839
||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||
Sbjct 778 GTCAATTGTTGGAACTGAGAACTAGTTCGAGAACAGAGCGTAATGTGGCAAGACATGATA 837
Query 840 CTACCATGTC-ACTGGAACATGAGAAAGCTTCTTTAGGTGGAAGAGTAGCTATATATTGA 898
|||||| | | | ||||| |||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 838 CTACCA-GACCATTGGAATATGAGAAAGCTTATTTAGGTGGAAGACTAGTTATATATTGA 896
Query 899 AAGACTTGTTTAGACCTCAAGACAACTCTATGCTTAGCAAAAAAGCTAACCTTGTCTACT 958
|||||||||||||| |||||| | ||| ||||||| || || |||||||||||||||
Sbjct 897 AAGACTTGTTTAGATCTCAAGGCCACT--ATGCTTACCAGAA--GCTAACCTTGTCTAC- 951
Query 959 ACATATTGATTTCTCAGACCATTCCAATAAAATGAGACTTGTTATTAT 1006
| || ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 952 A--TACTGATTTCTCAGGCAATTCCAATAAAATGAGACTTGTTATTAT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5