BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25495.1
Length=6444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894322 jgi|Araly1|894322|Al_scaffold_0006_2318 398 3e-109
Ahg351449 jgi|Araly1|351449|fgenesh1_pg.C_scaffold_6002042 346 1e-93
Ahg918641 jgi|Araly1|918641|Al_scaffold_0228_2 183 1e-44
Ahg900635 jgi|Araly1|900635|Al_scaffold_0004_1285 183 1e-44
Ahg905243 jgi|Araly1|905243|Al_scaffold_0003_2371 110 2e-22
Ahg900753 jgi|Araly1|900753|Al_scaffold_0004_1403 106 2e-21
Ahg900752 jgi|Araly1|900752|Al_scaffold_0004_1402 100 1e-19
> Ahg894322 jgi|Araly1|894322|Al_scaffold_0006_2318
Length=4824
Score = 398 bits (215), Expect = 3e-109
Identities = 264/288 (92%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 1015 AGCTGCCCGACTGCTGTGCTGCTGGTACAAATCTCATGAACCTCATCTTCCAAGTGATGG 1074
|||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||| |
Sbjct 3305 AGCTGCCCGACTTCTGTGCTGCTGGTTCAAATCTCGTGAACCTCATTTTCCAAGTGACAG 3364
Query 1075 AGTTAGATGGTTCTTTGGATACTAGCATCCATCATGACGAAAAA-CCAGGTTGTTTCCAT 1133
| ||||||||||||||||||||| |||||||||||||||||||| || || ||||| ||
Sbjct 3365 ATTTAGATGGTTCTTTGGATACTCGCATCCATCATGACGAAAAATCC-GGGTGTTTTCAC 3423
Query 1134 ACAATGAGCATTGAATCTGATTCAAGCAGCATTGAGAGTGCAATCAGATATGCCTTTGTC 1193
|||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 3424 ACAATGTGCATTGAATCTGATTCAAGCATCGTTGAGAGTGCAATCAGATATGCCTTTGTC 3483
Query 1194 CACGGGTCCTGCAAAGTTTCTTCTCTCTCCCTACCTGAGAACGAGGGTGTCTTTTCGTGC 1253
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 3484 CACGGGTCCTGCAAAGTTCCTTCTCTTTCCCTACCTGAAAACGAGGGTGTCTTTTCTTAC 3543
Query 1254 AGGGTGTTCCATTCTCGATATCCCGAGCTGCAGATGAGCGTGAAGGTA 1301
|||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 3544 AGGGTGTTCCATTCTCGATACCCCGAGCTGCATATGAGCGTAAAGGTA 3591
Score = 145 bits (78), Expect = 5e-33
Identities = 78/78 (100%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 824 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3220 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 3279
Query 884 GAACGAGAGCTAAGACTT 901
||||||||||||||||||
Sbjct 3280 GAACGAGAGCTAAGACTT 3297
Score = 145 bits (78), Expect = 5e-33
Identities = 78/78 (100%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 4809 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 4868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3220 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 3279
Query 4869 GAACGAGAGCTAAGACTT 4886
||||||||||||||||||
Sbjct 3280 GAACGAGAGCTAAGACTT 3297
> Ahg351449 jgi|Araly1|351449|fgenesh1_pg.C_scaffold_6002042
Length=2097
Score = 346 bits (187), Expect = 1e-93
Identities = 242/269 (90%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 1015 AGCTGCCCGACTGCTGTGCTGCTGGTACAAATCTCATGAACCTCATCTTCCAAGTGATGG 1074
||||||| |||||||||||||||||| ||||||| | |||||||| ||| |||||| ||
Sbjct 1220 AGCTGCCTGACTGCTGTGCTGCTGGTTCAAATCTTACAAACCTCATTTTCGAAGTGACGG 1279
Query 1075 AGTT-AGATGGTTCTTTGGATACTAGCATCCATCATGACGAAAAACCAGGTTGTTTCCAT 1133
| || ||||||| || |||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1280 A-TTCAGATGGTGCTATGGATACTAGTATCCATCATGACGAAAAATCAGGATGTTTCCAT 1338
Query 1134 ACAATGAGCATTGAATCTGATTCAAGCAGCATTGAGAGTGCAATCAGATATGCCTTTGTC 1193
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1339 ACCATGAGCATTGAATCTGATTCAAGAAGCGTTGAGAGTGCAATCAGATATGCCTTTGTC 1398
Query 1194 CACGGGTCCTGCAAAGTTTCTTCTCTCTCCCTACCTGAGAACGAGGGTGTCTTTTCGTGC 1253
|||| ||||||||||||| || |||| ||||||||||||| ||||||||||||||| | |
Sbjct 1399 CACGAGTCCTGCAAAGTTCCTACTCTTTCCCTACCTGAGAGCGAGGGTGTCTTTTCTTTC 1458
Query 1254 AGGGTGTTCCATTCTCGATATCCCGAGCT 1282
||||| ||||||||||||| |||||||||
Sbjct 1459 AGGGTTTTCCATTCTCGATTTCCCGAGCT 1487
> Ahg918641 jgi|Araly1|918641|Al_scaffold_0228_2
Length=546
Score = 183 bits (99), Expect = 1e-44
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 5282 GTTCACATGTAGCATTACAAACAATTTCAAAAGTGATCGGTAAA-GAAGG-TTGGTAAGA 5339
|||||||||||||||||||||||| ||| ||||||| ||||||| || || |||||||||
Sbjct 350 GTTCACATGTAGCATTACAAACAACTTCGAAAGTGACCGGTAAAGGAGGGTTTGGTAAGA 409
Query 5340 ACAGCAAAAACATTAGAAACCGAAATCAGATAAGTTTATACATTATTTTATGGTTGATAA 5399
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||
Sbjct 410 ACAGCAAAAACATTAGAAATCGAAATCAGATAAGTTTAGACATTGTTTTATGGTTGCTAA 469
Query 5400 AGTGTAAAATTTCTGCA 5416
||||||||| || ||||
Sbjct 470 AGTGTAAAAGTT-TGCA 485
Score = 161 bits (87), Expect = 5e-38
Identities = 105/114 (92%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 3682 CACACCATAGAAAGCATAAAACCAACGTATAAAGTCAAAAAGGTTTGGACTGGTGATCCT 3741
||| ||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||
Sbjct 160 CACGCCATAGAAAGCATAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCT 219
Query 3742 TGCTCTCCAAGACTATTCCCTTGGAAAGGTACTTCAAATTACCAAATAAAATCC 3795
|||||||||||||||||||||||| |||||||||| ||||||||||| || |||
Sbjct 220 TGCTCTCCAAGACTATTCCCTTGGGAAGGTACTTCTAATTACCAAATCAAGTCC 273
Score = 106 bits (57), Expect = 2e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 3862 ATGAG-CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGACATCTTTCC 3920
||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 274 ATGAGTCTTAGTACAAGTTGGTTACAAGGACCAATAGCCGTCTCATTTAGAAATCTCTCC 333
Query 3921 CTTCTTGAGTCAC 3933
|||||||||||||
Sbjct 334 CTTCTTGAGTCAC 346
> Ahg900635 jgi|Araly1|900635|Al_scaffold_0004_1285
Length=519
Score = 183 bits (99), Expect = 1e-44
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 5282 GTTCACATGTAGCATTACAAACAATTTCAAAAGTGATCGGTAAA-GAAGG-TTGGTAAGA 5339
|||||||||||||||||||||||| ||| ||||||| ||||||| || || |||||||||
Sbjct 383 GTTCACATGTAGCATTACAAACAACTTCGAAAGTGACCGGTAAAGGAGGGTTTGGTAAGA 442
Query 5340 ACAGCAAAAACATTAGAAACCGAAATCAGATAAGTTTATACATTATTTTATGGTTGATAA 5399
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||
Sbjct 443 ACAGCAAAAACATTAGAAATCGAAATCAGATAAGTTTAGACATTGTTTTATGGTTGCTAA 502
Query 5400 AGTGTAAAATTTCTGCA 5416
||||||||| || ||||
Sbjct 503 AGTGTAAAAGTT-TGCA 518
Score = 161 bits (87), Expect = 5e-38
Identities = 105/114 (92%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 3682 CACACCATAGAAAGCATAAAACCAACGTATAAAGTCAAAAAGGTTTGGACTGGTGATCCT 3741
||| ||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||
Sbjct 193 CACGCCATAGAAAGCATAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCT 252
Query 3742 TGCTCTCCAAGACTATTCCCTTGGAAAGGTACTTCAAATTACCAAATAAAATCC 3795
|||||||||||||||||||||||| |||||||||| ||||||||||| || |||
Sbjct 253 TGCTCTCCAAGACTATTCCCTTGGGAAGGTACTTCTAATTACCAAATCAAGTCC 306
Score = 106 bits (57), Expect = 2e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 3862 ATGAG-CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGACATCTTTCC 3920
||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 307 ATGAGTCTTAGTACAAGTTGGTTACAAGGACCAATAGCCGTCTCATTTAGAAATCTCTCC 366
Query 3921 CTTCTTGAGTCAC 3933
|||||||||||||
Sbjct 367 CTTCTTGAGTCAC 379
> Ahg905243 jgi|Araly1|905243|Al_scaffold_0003_2371
Length=375
Score = 110 bits (59), Expect = 2e-22
Identities = 72/78 (92%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 4087 GAATTTGAAAAGAA-ATAACTTGACTGGGTTTGTCCCAAGATCTCACAGGAAAAGAACAA 4145
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 168 GAATTT-AAAAGAAGATAACTTGACTGGGTTTGTCCCAAGATCTCTTAGGAAAAGAACAA 226
Query 4146 TTGCTAGTGAACTTGCAC 4163
| ||||||| ||||||||
Sbjct 227 TGGCTAGTGGACTTGCAC 244
> Ahg900753 jgi|Araly1|900753|Al_scaffold_0004_1403
Length=408
Score = 106 bits (57), Expect = 2e-21
Identities = 63/66 (95%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 3867 CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGACATCTTTCCCTTCTT 3926
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 46 CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGAAATCTCTCCTTTCTT 105
Query 3927 GAGTCA 3932
||||||
Sbjct 106 GAGTCA 111
> Ahg900752 jgi|Araly1|900752|Al_scaffold_0004_1402
Length=201
Score = 100 bits (54), Expect = 1e-19
Identities = 69/76 (91%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 3118 AGGTACAAAGTCGTGTGGCGTTGACAATTTGATGATGATAGATGTAATAAACTTGCAAAT 3177
|||| ||||||| ||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 56 AGGTCCAAAGTC--CTGGCGTTGAGAATTTGATGATGATATATATAATAAACTTGCAAAT 113
Query 3178 ATTTGCATTATACATT 3193
||||||||||||||||
Sbjct 114 ATTTGCATTATACATT 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 244215445941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5