BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25500.1
Length=3559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905735 jgi|Araly1|905735|Al_scaffold_0003_2863 4525 0.0
> Ahg905735 jgi|Araly1|905735|Al_scaffold_0003_2863
Length=3165
Score = 4525 bits (2450), Expect = 0.0
Identities = 2955/3188 (93%), Gaps = 77/3188 (2%)
Strand=Plus/Plus
Query 181 tcttcttcttattcttcttctacttactcttatcttcATCCTCCGATCTAGTCTTCGCCG 240
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TCTTGTTCTTGTTCTTCTTCTACTTACTCTTATCTTCATCCTCCGATCTAGTCTTCGCCG 70
Query 241 ACCGTCGTGTACTCCACGAACCATTCTTCCCTATAGATTcaccaccaccgtcaccaccat 300
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 71 ACCGTCGTGTCCTTCACGAACCATTCTTCCCTGTAGATTCACCACCACCGTCACCACCAT 130
Query 301 caccaccaccacTTCCTAAACTACCATTCTCTTCAACCACTCCTCCATCTTCATCAGACC 360
|||||||||| |||||||| || |||||||||||||| ||||| ||||| | |||||||
Sbjct 131 CACCACCACCGCTTCCTAAGCTTCCATTCTCTTCAACTACTCCACCATC-T--TCAGACC 187
Query 361 CAAATGCTTCTCCTTTCTTCCCTTTATACCCTTCATCTCCACCACCACCTTCTCCAGCCT 420
|||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 188 CAAATGCTTCACCTTTCTTCCCTTTATACCCTTCTTCTCCACCACCACCATCACCAGCCT 247
Query 421 CCTTCGCTTCTTTTCCGGCGAATATCTCATCTCTAATCGTCCCTCACGCCACTAAATCCC 480
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 248 CATTCGCTTCTTTTCCGGCGAATATCTCATCTCTAATCGTCCCTCACGCCACTAAATCAC 307
Query 481 CACCTAACTCCAAAAAACTCCTTATCGTCGCTATCTCCGCCGTTTCCTCCGCTGCTTTAG 540
||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 308 CACCTAACTCCAAGAAACTCCTTATAGTCGCTATCTCCGCCGTCTCCTCCGCCGCTTTAG 367
Query 541 TCGCTCTACTTATCGCTTTACTCTATTGGCGAAGAAGCA-AACGTAACCAAGATCTTAAC 599
||||| ||||||||||||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct 368 TCGCTGTACTTATCGCTTTACTCTATTGGCGTAGAAGAAGAAC-CAACCAAGATCTTAAC 426
Query 600 TTCTCCGATGATAGCAAAACATACACCACCGACAGTAGCCGCCGTGTCTA--C-CCTCCT 656
|||||||||||||||||||| |||||||||||||||||||| | ||||| | ||||||
Sbjct 427 TTCTCCGATGATAGCAAAACTTACACCACCGACAGTAGCCGTAGAGTCTACCCTCCTCCT 486
Query 657 CCTCCGGCAACGGC-GCCTCCAACACGACGCAATGCGGAGGCTAGAAGTAAACAGAGGAC 715
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 487 CCTCCGGCAACGGCTG-CTCCAACACGACGCAATGCGGAGGCTAGAAGTAAACAGAGGTC 545
Query 716 CAC--C----ACGAGCTCCACCAATAACAACAGCTCTGAGTTTCTTTACTTAGGAACAAT 769
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 546 CACGACAAGAACGAGCTCCACCAAT---AACAGCTCTGAGTTTCTTTACTTAGGAACAAT 602
Query 770 GGTGAATCAAAGAGGAATCGATGAACAATCTCTTAGTAATAATGGATCAAGCTCAAGAAA 829
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 603 GGTGAATCAAAGAGGAATTGAAGAACAATCTCTTAGTAATAATGGATCAAGCTCAAGAAA 662
Query 830 ACTTGAATCTCCAGATCTTCAACCACTTCCTCCATTGATGAAACGAAGTTTCCGTTTAAA 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 663 ACTTGAATCTCCAGATCTTCAACCACTTCCTCCATTGATGAAACGAAGTTTCCGGTTAAA 722
Query 890 TCCAGATGTTGGTTCAATCGGAGAAGAAGATGAAGAAGATGAGTTTTACTCTCCACGTGG 949
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 723 TCCAGATGTTGGTTCAATCGGAGAAGAAGAAGAAGAAGAAGAGTTTTACTCTCCACGTGG 782
Query 950 CTCACAAAGCGGGCGAGAACCGTTAAACCGGGTCGGACTTCCGGGTCAAAATCCTAGATC 1009
||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||||
Sbjct 783 CTCACAAAGCGGGCGAGAAACATTAAACCGGGTCGGAGTTCCGGGTCAAAACCCTAGATC 842
Query 1010 TGTTAACAATGACACTATCTCTTGCTCATCTTCAAGCTCTGGTTCACCAGGAAGATCAAC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGTTAACAATGACACTATCTCTTGCTCATCTTCAAGCTCTGGTTCACCAGGAAGATCAAC 902
Query 1070 ATTTATCAGTATCTCTCCTTCAATGAGTCCTAAGAGATCTGAACCAAAACC-GCCGGTTA 1128
|||||||||||||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct 903 GTTTATCAGTATCTCTCCTTCAATGAGTCCTAAAAGATCTGAACCAAAACCTG-TAGTAA 961
Query 1129 TC-TC-CA-C---ACCA---G--A--A-----CCGGCGGAGTTAACCGATTATAGATTTG 1170
|| | || | |||| | | | |||||||||||||| |||||||||||||
Sbjct 962 TCACCACACCAGAACCACCGGCAAGGATTTCTCCGGCGGAGTTAACAGATTATAGATTTG 1021
Query 1171 TTCGGTCTCCGTCACTGTCGTTAGCTTCTTTATCGTCGGGA-----T----TGAAAAACT 1221
|| ||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 1022 TTAGGTCTCCGTCACTATCGTTAGCTTCTTTATCGTCGGGATTTTGTCCGGTGAAAAACT 1081
Query 1222 CCGATGAAGTAGGATTGAATCAAATCTTTAGATCTCCGACGGTTACATCTCTAACAACTT 1281
||||||||| | ||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 1082 CCGATGAAGGAAGATTGAATCAAATCTCTAGATCTCCGACGGTTACATCACTCACAACTT 1141
Query 1282 CACCGGAGAATAACAAAAAAGAGAACTCTCCATTATCATCTACTTCAACTTCACCGGA-A 1340
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 1142 CACCGGAGAATAACAAAAAAGAGAACTCTCCGTTATCATCTGCTTCAACTTCACCGGAGA 1201
Query 1341 CGACGACCAAATGATACACCAGAAGCTTACTTGAGATCTCCGTCGCATTCTTCTGCTTCT 1400
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1202 -GACGACCAAATGATACACCAGAAGCTTATTTGAGATCTCCGTCGCATTCTTCTGCTTCG 1260
Query 1401 ACATCACCGTATAGATGTTTTCAGAAATCTCCGGAGGTCTTACCGGCGTTTATGAGTAAT 1460
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1261 ACATCACCGTATAGATGTTTTCAGAAGTCTCCGGAGGTGTTACCGGCGTTTATGAGTAAT 1320
Query 1461 CTCCGGCAAGGTTTGCAATCTCAGTTACTATCTTCTCCTTCTAACTCTCATGGAGGACAA 1520
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1321 CTCCGGCAAGGTTTGCAATCTCAGTTACTTTCTTCTCCTTCAAATTCTCATGGAGGACAA 1380
Query 1521 GGTTTCCTTAAGCAGTTAGATGCATTACGTTCTCGTTCACCGTCGTCGTCTTCTTCTTCT 1580
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1381 GGTTTCCTTAAGCAGTTAGATGCATTGCGTTCTCGTTCACCGTCGTCTTCTTCTTCATCA 1440
Query 1581 GTTTGTTCTTCACCGGAGAAAGCTTCTCATAAGTCACCAGTTACATCTCCTAAGTTATCT 1640
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct 1441 GTTTGTTCTTCACCGGAGAAAGCTTCTCACAAGTCACCGGTTACATCTCCGAAGTTGTCT 1500
Query 1641 TCCCGGAATTCGCAGTCTCTATCATCTTCTCCGGATAGAGATTTTAGTCATAGCTTAGAT 1700
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1501 TCCCGGAATTCGCAGTCTCTAGCATCATCTCCGGATAGAGATTTTAGTCATAGCTTAGAT 1560
Query 1701 GTATCACCACGGATATCGAACATTTCACCTCAAATTTTACAGTCTCGTGTGCCTCCGCCT 1760
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1561 GTATCACCACGGATTTCGAACATTTCACCTCAAATTTTACAGTCTCGAGTGCCTCCGCCT 1620
Query 1761 CCTCCTCCTCCCCCACCGTTGCCGTTGTGGGGACGACGGAGTCAGGTGACTAC-TAAAGC 1819
|| || ||||| ||| || |||||||||||||||| |||||||||| | ||| ||
Sbjct 1621 CCGCCACCTCCTCCA------CCATTGTGGGGACGACGGAATCAGGTGACT-CATAAGGC 1673
Query 1820 GGACACAATCTCGAGACCGCCTTCTCTTACACCGCCTTCACATCCTTTTGTGATCCCATC 1879
||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1674 GGAGACAATCTCGAAACCGCCTTCTCTTACACCGCCTTCACATCCATTTGTGATATCATC 1733
Query 1880 TGAAAACTTACCAGTGACTTCGTCTCCTATGGAGACTCCAGAGACGGTTTGTGCGAGTGA 1939
|||||||| |||||||| | ||||| ||||||||||||||||||||| |||| |||||
Sbjct 1734 CGAAAACTTGCCAGTGAC-T--TCTCCAATGGAGACTCCAGAGACGGTTAGTGCCAGTGA 1790
Query 1940 GGCGGCGGAGGAAACTCCGAAACCGAAGCTAAAGGCGTTACATTGGGATAAAGTTAGAGC 1999
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GCCAGCGGATGAAACTCCGAAACCGAAGCTAAAGGCGTTACATTGGGATAAAGTTAGAGC 1850
Query 2000 AAGTTCGGATCGTGAGATGGTTTGGGATCATCTTCGATCAAGCTCTTTCAAATTAGATGA 2059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AAGTTCGGATCGTGAGATGGTTTGGGATCATCTTCGATCAAGCTCTTTCAAATTAGATGA 1910
Query 2060 GGAGATGATTGAGACGTTGTTTGTGGCGAAGTCGTTAAACAACAAACCAAATCAGAGTCA 2119
|||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||
Sbjct 1911 AGAGATGATTGAGACGTTGTTCGTGGCAAAGTCGTTAGATAACAAACCAAATCAGAGTCA 1970
Query 2120 GACAACTCCAAGATGTGTTCTCCCGAGCCCGAACCAAGAGAACAGAGTCCTGGACCCGAA 2179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1971 GACAACTCCAAGATGTGTTCTCCCGAGCCCGAACCAAGAGAACAGAGTCTTGGACCCTAA 2030
Query 2180 GAAGGCTCAGAATATTGCCAT-CTTGCTTCGTGCACTTAATGTCACTATAGAAGAAGTTT 2238
|||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||
Sbjct 2031 GAAGGCTCAGAATATTGCGATACT-GCTTCGCGCACTTAATGTCACTATAGAAGAAGTTT 2089
Query 2239 GTGAGGCTCTTCTTGAAGGCAATGCTGATACACTGGGGACTGAACTTCTTGAGAGCTTAC 2298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2090 GTGAGGCTCTTCTTGAAGGCAATGCTGATACACTTGGGACTGAACTTCTTGAGAGCTTAC 2149
Query 2299 TGAAGATGGCACCGACAAAAGAAGAAGAGCGCAAGTTGAAAGCGTACAATGATGATTCGC 2358
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 2150 TGAAGATGGCACCGACAAAAGAAGAAGAACGCAAATTGAAAGCGTATAAGGATGATTCGC 2209
Query 2359 CTGTTAAGCTTGGACATGCTGAGAAATTCCTTAAGGCAATGTTGGACATCCCTTTCGCCT 2418
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2210 CCGTTAAGCTTGGACATGCTGAGAAATTCCTTAAGGCAATGCTGGACATCCCTTTCGCCT 2269
Query 2419 TTAAAAGAGTTGATGCAATGCTCTATGTAGCCAACTTTGAGTCCGAGGTTGAATACTTGA 2478
|||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||
Sbjct 2270 TTAAAAGAGTTGATGCGATGCTCTATGTTGCTAACTTTGAGTCTGAGGTTGAATACCTGA 2329
Query 2479 AGAAATCTTTTGAGACTCTTGAGGCTGCTTGTGAAGAACTGAGGAACAGTAGGATGTTCT 2538
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2330 AAAAATCTTTTGAGACTCTTGAGGCTGCTTGTGAGGAACTCAGGAACAGTAGGATGTTCT 2389
Query 2539 TAAAGCTTCTTG-AAGCGGTTCTAAAGACAGGAAACCGTATGAACGTTGGAACAAACCGA 2597
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2390 TAAAGCTT-TTGGAAGCGGTTCTAAAGACCGGAAACCGTATGAACGTTGGAACAAACCGA 2448
Query 2598 GGAGATGCACATGCGTTCAAGCTTGATACACTTCTCAAGCTAGTCGATGTCAAAGGCGCT 2657
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 2449 GGGGATGCTCATGCGTTCAAGCTTGACACACTCCTCAAGCTAGTCGATGTTAAAGGCGCT 2508
Query 2658 GATGGGAAAACAACTCTCTTGCATTTCGTTGTACAAGAGATAATCCGAGCAGAAGGCACA 2717
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 GACGGGAAAACAACTCTCTTGCATTTCGTTGTACAAGAGATAATCCGAGCAGAAGGCACA 2568
Query 2718 CGTCTCTCAGGTAACAATACACAAACAGATGACATTAAATGCCGGAAACTAGGTCTCCAA 2777
||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||
Sbjct 2569 CGTCTCTCAGGTAACAATACA------GATGACATCAAATGCAGGAAACTAGGCCTCCAA 2622
Query 2778 GTTGTATCAAGTCTCTGTTCTGAGCTTAGTAACGTCAAGAAAGCTGCTGCGATGGACTCA 2837
|| ||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||
Sbjct 2623 GTCGTATCAAGTCTCTGTTCAGAGCTAAGTAACGTTAAGAAAGCTGCTGCAATGGACTCA 2682
Query 2838 GAAGTACTAAGCAGCTACGTCTCCAAGCTTTCTCAAGGCATTGCCAAGATCAACGAAGCA 2897
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 2683 GAAGTACTAAGCAGCTACGTCTCCAAGCTTTCTCAAGGGATCGCCAAGATTAACGAAGCT 2742
Query 2898 ATCCAAGTCCAATCAACAATCACAGAAGAAAGCAACAGTCAGAGGTTTTCGGAATCGATG 2957
||| ||||||||||||| || | ||||||||||||||||||||| |||||||||||||||
Sbjct 2743 ATCAAAGTCCAATCAACGATGATAGAAGAAAGCAACAGTCAGAGATTTTCGGAATCGATG 2802
Query 2958 AAAACGTTTCTGAAAAGAGCTGAGGAAGAGATCATCAGAGTACAAGCTCAAGAGAGCGTA 3017
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2803 AACACGTTTCTGAAAAGAGCTGAGGAAGAGATCATCAGAGTACAAGCTCAAGAGAGCGTC 2862
Query 3018 GCGTTATCACTTGTAAAAGAAATCACAGAGTATTTCCATGGAAACTCGGCTAAAGAAGAA 3077
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2863 GCATTATCACTTGTGAAAGAAATCACAGAGTATTTCCACGGAAACTCGGCTAAAGAAGAA 2922
Query 3078 GCGCATCCGTTTAGAATATTCTTGGTGGTTAGAGACTTCCTTGGAGTAGTAGACAGAGTT 3137
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2923 GCGCACCCGTTTAGAATATTCTTGGTGGTTAGAGACTTCCTTGGAGTAGTAGACAGAGTC 2982
Query 3138 TGCAAAGAAGTAGGGATGATAAACGAAAGAACAATGGTTAGTTCTGCTCATAAGTTTCCT 3197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2983 TGCAAAGAAGTAGGGATGATAAACGAAAGAACAATGGTTAGTTCTGCTCATAAGTTCCCT 3042
Query 3198 GTTCCAGTGAATCCAATGATGCCACAACCTCTTCCTGGACTCGTTGGACGAAGACAATCT 3257
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 3043 GTTCCAGTGAATCCAATGCTGCCACAACCTCTTCCTGGACTCGTAGGACGAAGACAATCT 3102
Query 3258 TCTTCTTCTTCGTCGTCGTCTTCAACCTCTTCGTC-TGATGAAGACGAACATAACTCAAT 3316
|||||||| ||||| || ||||| | ||||||| | | || ||||||||||||||| |
Sbjct 3103 TCTTCTTCGTCGTCTTCTTCTTC--CG-CTTCGTCATCA-GACGACGAACATAACTCA-T 3157
Query 3317 CTCATTAG 3324
||||||||
Sbjct 3158 CTCATTAG 3165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134419347836
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5