BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25520.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480054 jgi|Araly1|480054|fgenesh2_kg.3__2755__AT3G25520.1 1784 0.0
Ahg947841 jgi|Araly1|947841|scaffold_704070.1 1360 0.0
Ahg898932 jgi|Araly1|898932|Al_scaffold_0005_2898 525 3e-148
> Ahg480054 jgi|Araly1|480054|fgenesh2_kg.3__2755__AT3G25520.1
Length=1131
Score = 1784 bits (966), Expect = 0.0
Identities = 1078/1131 (95%), Gaps = 11/1131 (1%)
Strand=Plus/Plus
Query 8 CTTCTCTTCACTCACAATCTCACA-GCAAAGCCTCTCGTTGCTAGAGGAATCAAACAATG 66
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTCGTCACTCTCAATCTCACAGGCAAAGCCTCTCGTTGCTAGAGGAATCAAACAATG 60
Query 67 GTGTTTGTGAAGTCCACCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGG 126
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTGTTTGTGAAGTCCTCCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTTAAGTTCAGG 120
Query 127 AGAAGAAGAGATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAG 186
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGAAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAG 180
Query 187 AACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAAAGACATAGTG 246
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AACAAGTACAATACACCTAAGTACCGTTTTGTTGTCCGGTTTACCAACAAAGACATAGTG 240
Query 247 GCACAGATTGTATCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACAT 306
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCACAGATTGTCTCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACAT 300
Query 307 GAACTGCCTCAGTATGGTCTCACTGTTGGTCTTACAAACTATGCTGCAGCTTACTGTACT 366
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGTTGCCTCAGTATGGACTCACTGTTGGTCTTACAAACTATGCTGCAGCTTACTGTACT 360
Query 367 GGCCTTCTTTTGGCTCGCCGTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGA 426
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 361 GGCCTTCTTTTGGCTCGCCGTGTTCTGAAGATGTTGGAAATGGATGACGAGTATGAGGGC 420
Query 427 AACGTTGAGGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC 486
||||| |||||||||||||| ||||||||| ||||||||||||| || ||||||||||||
Sbjct 421 AACGTAGAGGCCACTGGAGAGGACTTTTCCATTGAGCCAACTGAGTCGAGGAGACCTTTC 480
Query 487 CGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTG-- 544
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 CGTGCTCTTCTTGATGTCGGACTTATCAGGACCACAACAGGAAACCGTGTGTTTGGTGCC 540
Query 545 --C----T-CTTAAGGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGA 597
| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 CTCAAGGTACTTAAGGGTGCTTTGGATGGAGGTCTTGATATCCCTCACAGTGACAAGAGA 600
Query 598 TTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACATC 657
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGCTGGTTTCAACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACATC 660
Query 658 TATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTTA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTTA 720
Query 718 CAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGTTG 777
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 721 CAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATCGAAGAGTTG 780
Query 778 TACAAGAAGGTTCACGCAGCTATTCGTGCTGACCCCAACCCAAAGAAAACCGTGAAACCT 837
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 781 TACAAGAAGGTTCACGCAGCTATTCGCGCAGACCCCAACCCAAAGAAAACCGAGAAACCT 840
Query 838 GCTCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAAC 897
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 841 GCCCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTGACGTACGAGGAGAGGAAGAAC 900
Query 898 AAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGTGATGATGATGATGAGGAC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGTGATGATGATGATGAGGAT 960
Query 958 GATGAAGAGTAAATCAGTCAAGCCTTCTTTATCTCATGCCTCTTGTAGTTTTTTATCTTT 1017
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct 961 GATGAAGAGTAAATCAGTCAAGCCTTCTTTATCTTATGTCTCTTGTAGCTTTTTATCTTT 1020
Query 1018 TGAGCTTAATGCCTCAAATTTTCTGTTTTCAGACTAAAACACTCAGCTTTTGTGTTCACA 1077
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 TGAGCTTAATGCCTCAAATTTTCTGTTTTCAGACTAAAACACTTTGCTTTTGTGTTCACA 1080
Query 1078 TTTT-AATTGTGTTCGAGGATTTTGATATTGAGGATACATTTTCTTTGAAG 1127
|||| |||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 1081 TTTTTAATTGTGTTCGAAGATTTTGATTTTGAGGATACATTTTCTTTTAAG 1131
> Ahg947841 jgi|Araly1|947841|scaffold_704070.1
Length=1099
Score = 1360 bits (736), Expect = 0.0
Identities = 983/1097 (90%), Gaps = 38/1097 (3%)
Strand=Plus/Plus
Query 58 CAAACAATGGTGTTTGTGAAGTCCACCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTG 117
||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 32 CAAACGATGGTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTG 91
Query 118 AAGTTCAGGAGAAGAAGAGATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAAC 177
|||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 92 AAGTTCAGGAGAAGGAGAGAGGGAAAGACTGATTACAGGGCAAGGATTCGTCTTATCAAT 151
Query 178 CAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAAA 237
||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 152 CAAGATAAGAACAAGTACAACACGCCTAAGTACCGTTTTGTTGTCCGATTTACCAACAAA 211
Query 238 GACATAGTGGCACAGATTGTATCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCT 297
||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 212 GACATCGTGGCACAGATTGTGTCTGCAAGTATAGCTGGTGACATTGTTAAAGCTTCTGCT 271
Query 298 TACGCACATGAACTGCCTCAGTATGGTCTCACTGTTGGTCTTACAAACTATGCTGCAGCT 357
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 272 TACGCACATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCT 331
Query 358 TACTGTACTGGCCTTCTTTTGGCTCGCCGTGTT-TTAAAGATGTTGGAAATGGATGACGA 416
||||||||||||||||||||||| || |||||| | ||| ||||||||||||||||||||
Sbjct 332 TACTGTACTGGCCTTCTTTTGGCCCGTCGTGTTCTGAAA-ATGTTGGAAATGGATGACGA 390
Query 417 GTATGAGGGAAACGTTGAGGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAG 476
||||||||||||||| |||||||||||||| |||||||| || || ||||| ||||| ||
Sbjct 391 GTATGAGGGAAACGTAGAGGCCACTGGAGAGGACTTTTCTGTGGAACCAACGGATTCCAG 450
Query 477 GAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTGT 536
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 451 AAGACCTTTCCGTGCTCTTCTTGATGTCGGACTTATCAGGACCACAACGGGAAACCGTGT 510
Query 537 GTTCGGTGCTCTTAAGGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG 596
||| |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 511 GTTTGGTGCTCTCAAGGGTGCTTTGGACGGAGGTCTTGATATCCCACACAGTGACAAGAG 570
Query 597 ATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACAT 656
||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 571 ATTTGCTGGTTTCAACAAAGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACAT 630
Query 657 CTATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTT 716
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 631 CTATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGTGAAGATGAGCCAGAGAAGTT 690
Query 717 ACAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGTT 776
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 691 GCAAACTCACTTCAGTGCTTACATTAAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGAT 750
Query 777 GTACAAGAAGGTTCACGCAGCTATTCGTGCTGACCCCAACCCAAAGAAAACCGTGAAACC 836
||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||
Sbjct 751 GTACAAGAAGGTTCACGCAGCTATTCGAGCAGACCCCAACCCTAAGAAAACCGAGAAACC 810
Query 837 TGCTCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAA 896
||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 811 TGCCCCCAAGGAACACAAGAGGTACAACTTGAAGAAACTGACTTATGAAGAGAGGAAGAA 870
Query 897 CAAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGTGATGATGATGATGA-G- 954
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 871 CAAGTTGATCGAGAGAGTTAAGGCATTGAACGGAGCAGGTGGTGATGATGATGATGATGA 930
Query 955 G-ACGATGAAGAGTAAATCAG---TCAAGCCTTCTTTATCTCAT-GCCTCTTGTAGTTTT 1009
| | |||||||||||||||| || ||||| |||| ||| || |||||| |||| | |
Sbjct 931 GGATGATGAAGAGTAAATCACCAATCCAGCCTCCTTTGTCT-ATTGCCTCTAGTAGCTAT 989
Query 1010 TTATCTTTTGAGCTTAATGCCTCAAATTTTCTGTTTTCAGACTAAAACACTCAGCTTTTG 1069
||| ||| | | | | |||| | ||||| ||||||||||| |||||
Sbjct 990 TTA-CTT--G---T----G--T----TTTT-T-----CAGACCAAAACACTCAGTTTTTG 1027
Query 1070 TGTTCACATTTTAATTGTGTTCGAGGATTTTGATATT-GAGGATACATTTTCTTTGAAGT 1128
| |||| |||||| ||| ||| || ||||||||| || ||||||| ||||||||||||
Sbjct 1028 TTTTCAAATTTTAGTTGCGTTGGAAGATTTTGAT-TTCGAGGATATGTTTTCTTTGAAGA 1086
Query 1129 ATCATTATCTTATTATT 1145
|| |||| | ||||||
Sbjct 1087 AT--TTAT-T-ATTATT 1099
> Ahg898932 jgi|Araly1|898932|Al_scaffold_0005_2898
Length=906
Score = 525 bits (284), Expect = 3e-148
Identities = 591/736 (80%), Gaps = 33/736 (4%)
Strand=Plus/Plus
Query 95 CTTACTTC-AAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGATGGAAAGACTGACTA- 152
|||| ||| | |||||| || || || | |||||||||||||||||| |||||||| ||
Sbjct 32 CTTA-TTCGATGAGGTATCAGGTCAAATACAGGAGAAGAAGAGATGGCAAGACTGATTAT 90
Query 153 CAGGGCAAGGATCCGTC-T-T-ATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTA 209
| | || || ||||||| | | ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 91 C-GTGCCAGAATCCGTCGTCTAATCAATCAAGACAAGAACAAATACAACACTCCAAAGTA 149
Query 210 TCGTTTTGTTGTCCGGTTTACCAACAAAGACATAGTGGCACAGATTGTATCTGCAAGCAT 269
||| |||||||| | ||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 150 TCGGTTTGTTGTTAGATTTACAAACAAAGACATAACGGCACAGATTGTATCTGCGAGCAT 209
Query 270 TGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACATGAACTGCCTCAGTATGGTCTCAC 329
||||||||| | || ||| ||||||| || || || ||||| || ||||| || |
Sbjct 210 TGCTGGTGATGTAATTCTCGCTGCTGCTTATGCTCACGAGCTGCCACAATATGGGCTTAA 269
Query 330 TGTTGGTCTTACAAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCTCGCCGTGT 389
||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||| |||||
Sbjct 270 TGTTGGTCTTACAAACTATTCTGCAGCATACTGTACTGGACTTCTCCTGGCTCGACGTGT 329
Query 390 -TTTAAAGATGTTGGAAATGGATGAC-GAGTATGAGGGAAA-CGTTGAGGCCACTGGAGA 446
| ||| ||||| |||||||||| | |||||||| ||||| | | |||||| |||| ||
Sbjct 330 CCTGAAA-ATGTTTGAAATGGATG-CAGAGTATGAAGGAAATC-TCGAGGCCTCTGGGGA 386
Query 447 AGACTTT-TCCGTTGAGCCAACTG-ATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTT 504
||| ||| || || || || |||| | | |||||||| |||||||||||||||||||||
Sbjct 387 AGA-TTTCTCAGTGGAACCTACTGAAAAC-AGGAGACCGTTCCGTGCTCTTCTTGATGTT 444
Query 505 GGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGGGTGCT-TTGGA 563
||||||||||| || || || ||||||||||| || |||||||| |||||||| ||| |
Sbjct 445 GGACTTATCAGAACAACTACCGGAAACCGTGTCTTTGGTGCTCTGAAGGGTGCACTTG-A 503
Query 564 TGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTC-CACAAGGAGAACA 622
||||||||||||||| ||||| || ||||||||||| || || ||| | ||| || ||||
Sbjct 504 TGGTGGTCTTGATATACCTCATAGCGACAAGAGATTCGCAGGATTCTC-CAAAGAAAACA 562
Query 623 AGCAACTTGATGCTGAAA-TCCACAGGAACTACATCTATGGTGGCCATGTCT-CAAACTA 680
| || || ||| | | || || ||| || |||||||||||||| ||||| | || | ||
Sbjct 563 AACAGCTCGATTCCGCAACTC-ACACCAAATACATCTATGGTGGTCATGT-TGCAGATTA 620
Query 681 CATGAAG-CTGTTGGGAGAAGATGAGCCAGAGAAGTTACAAACTCACTTCAGTGCTTACA 739
||||||| || | ||||| ||||| ||||| || || ||||| ||||||| ||
Sbjct 621 CATGAAGACTCTAAAC-GAAGACGAGCCCGAGAAATTCCAGACTCATTTCAGTGAGTATG 679
Query 740 TCAAGAAAGG-AGTTGAAGCTGA-GAGCATTGAGG-AGTTGTACAAGAAGGTTCACGCAG 796
| |||||||| | ||||||| || || || |||| | ||||||||||||||||| || |
Sbjct 680 TGAAGAAAGGTA-TTGAAGCAGATGAA-ATGGAGGCA-TTGTACAAGAAGGTTCATGCCG 736
Query 797 CTATTCGTGCTGACCC 812
| || || ||||||||
Sbjct 737 CGATCCGAGCTGACCC 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5