BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25530.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480056 jgi|Araly1|480056|fgenesh2_kg.3__2757__AT3G25530.1 1635 0.0
> Ahg480056 jgi|Araly1|480056|fgenesh2_kg.3__2757__AT3G25530.1
Length=1085
Score = 1635 bits (885), Expect = 0.0
Identities = 1039/1109 (94%), Gaps = 28/1109 (3%)
Strand=Plus/Plus
Query 1 ATGATAATGGTTCTCTGATTAG-AAAAGGCTCCGGCTTTATCATTCTCAGACCATCATCA 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATAATGGTTCTCTGATTAGAAAAAGGCTCCGGCTTTATCATTCTCAGACCATCATCA 60
Query 60 CTAAGCAGTAAGTAAGCACTATAATCGCAGA-AGATAGATAAAATGGAAGTAGGGTTTCT 118
||||||| | | | | | | | | ||| ||| ||| |||||||| |||||||||||
Sbjct 61 CTAAGCACT-A-T-A--A-TCGGA--G-AGATAGAGAGAAAAAATGGAGGTAGGGTTTCT 111
Query 119 GGGTTTGGGAATCATGGGAAAAGCCATGTCAATGAATCTATTGAAGA-ATGGATTCAAAG 177
||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 112 GGGTTTGGGTATAATGGGAAAAGCCATGTCAATGAATCTATTGAA-ACATGGATTCAAAG 170
Query 178 TCACTGTATGGAACAGAACACTCTCCAAGTGTGATGAGCTTGTGGAGCATGGTGCATCAG 237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 TCACTGTATGGAACAGAACACTCTCCAAGTGTGATGAACTTGTGGAGCATGGTGCATCAG 230
Query 238 TATGTGAGAGTCCAGCTGAAGTAATCAAGAAATGCAAATACACTATTGCTATGCTCTCTG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TATGTGAGAGTCCAGCTGAAGTAATCAAGAAATGCAAATACACTATTGCTATGCTCTCTG 290
Query 298 ATCCTTGTGCTGCTCTTTCGGTTGTTTTCGATAAAGGCGGTGTTTTGGAGCAGATATGTG 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 291 ATCCTTGTGCTGCTCTTTCGGTTGTTTTCGATAAAGGTGGTGTTTTGGAGCAGATTTGTG 350
Query 358 AAGGAAAAGGTTATATCGATATGTCGACTGTTGATGCAGAGACTTCTTTGAAGATCAATG 417
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 351 AAGGAAAAGGTTATATCGATATGTCGACTGTTGATGCAGAGACTTCTTTAAAGATCAATG 410
Query 418 AGGCAATCACCGGGAAGGGTGGTCGGTTCGTAGAAGGTCCGGTTTCAGGTAGCAAAAAGC 477
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 411 AGGCAATCACGGGGAAGGGTGGTCGGTTCGTTGAAGGTCCGGTTTCAGGTAGCAAAAAGC 470
Query 478 CAGCTGAAGATGGCCAACTCATTATCCTTGCTGCTGGTGACAAGGCACTCTTTGAGGAAT 537
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 471 CAGCTGAAGATGGCCAACTCATTATCCTTGCTGCTGGTGACAAGGCGCTCTTTGAGGAAT 530
Query 538 CAATCCCAGCTTTTGATGTCTTGGGGAAGAGATCGTTTTACTTGGGACAAGTTGGAAACG 597
|||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 531 CAATCCCAGCTTTTGACGTCTTGGGTAAGAGATCGTTTTTCTTGGGACAAGTTGGAAACG 590
Query 598 GAGCTAAAATGAAGCTAATAGTGAACATGATAATGGGAAGCATGATGAATGCATTCTCTG 657
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 591 GAGCTAAAATGAAGCTAATAGTGAACATGATAATGGGAAGCATGATGAACGCATTCTCCG 650
Query 658 AGGGGCTTGTATTGGCTGACAAGAGTGGACTTAGCTCTGACACTCTTTTGGATATTCTGG 717
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 651 AGGGGCTTGTATTGGCTGACAAGAGTGGACTTAGCTCTGACGCTCTTCTGGATATTCTGG 710
Query 718 ATCTGGGAGCAATGACTAACCCGATGTTCAAGGGGAAAGGACCTTCAATGAACAAGAGTA 777
|||| || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 711 ATCTTGGCGCAATGACAAACCCGATGTTCAAGGGCAAAGGACCTTCCATGAATAAGAGCA 770
Query 778 GTTACCCACCAGCATTTCCATTGAAACATCAGCAGAAAGACATGAGGCTAGCTCTTGCTC 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTTACCCACCAGCATTTCCACTGAAACATCAGCAGAAAGACATGAGGCTAGCTCTTGCTC 830
Query 838 TTGGCGATGAAAACGCGGTTTCCATGCCTGTAGCCGCGGCTGCAAACGAGGCTTTTAAGA 897
||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 831 TTGGCGATGAAAATGCTGTTTCCATGCCTGTAGCCGCGGCTGCGAATGAGGCTTTTAAGA 890
Query 898 AGGCGAGAAGCTTGGGACTAGGAGATCTCGACTTCTCTGCTGTGATTGAAGCTGTGAAAT 957
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 891 AGGCGAGAAGCTTGGGACTGGGAGATCTCGACTTCTCTGCGGTGATTGAAGCTGTGAAAT 950
Query 958 TCTCCCGCGAATAGCAAACTGTTTCAAAACATCCACTCATTTGGATTGGC-TGAGATACT 1016
||||||||||||||||||||| || ||||||||||||||||||||||||| |||| ||||
Sbjct 951 TCTCCCGCGAATAGCAAACTG-TTGAAAACATCCACTCATTTGGATTGGCTTGAGTTACT 1009
Query 1017 GAAATCATTGTTATCTTCCCAAATAGAGATTTACTCATTTGGCCAAACACACATTTTACT 1076
|||| ||||||||||||||| ||||||| |||||||||||| | || | | |
Sbjct 1010 TAAATGATTGTTATCTTCCCAGATAGAGA-TTACTCATTTGG-----C-CA-A----A-T 1056
Query 1077 CCTTCACCAAATAAAAAGTCTTAACCACA 1105
|||||||||||||||||||||||||||||
Sbjct 1057 CCTTCACCAAATAAAAAGTCTTAACCACA 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5