BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25540.1
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484309 jgi|Araly1|484309|fgenesh2_kg.5__301__AT3G25540.1 1245 0.0
Ahg896391 jgi|Araly1|896391|Al_scaffold_0005_357 900 0.0
> Ahg484309 jgi|Araly1|484309|fgenesh2_kg.5__301__AT3G25540.1
Length=1479
Score = 1245 bits (674), Expect = 0.0
Identities = 936/1050 (89%), Gaps = 68/1050 (6%)
Strand=Plus/Plus
Query 578 TGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGG 637
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 473 TGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTGACTTATAATGAACCTTGG 532
Query 638 TTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCA 697
||||||||||||||||||||||||||| | | ||| | ||| | | | |
Sbjct 533 TTTTCAAATACTCTCTACTTTTGGATT-G---T-AAGA-C---TTTTTCAT--TTTTTC- 580
Query 698 AT-GAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTAT 756
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GTCG-TTATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTAT 639
Query 757 ATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCA 816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 640 ATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCGATGGGTCATCA 699
Query 817 TATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTC 876
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TATCACAACTCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTC 759
Query 877 TGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAA 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 760 TGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCGAA 819
Query 937 ATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGT 996
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 820 GTATTGCGGAGCTGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCTTTGTCTTGGGT 879
Query 997 CGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGCTATCAAATCAT 1056
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 880 CGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACAAGCTATCAAATTAT 939
Query 1057 TATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACAC 1116
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 940 TATGACTGTGGACAAAGAAAAGCATCCTAATGGGCCGATCTTGTACTATATGTTCAACAC 999
Query 1117 ACTTTTGTATTTCTTGCTTGTTCTTCACATATTCTGGTGGGTTTTGATTTACCGGATGCT 1176
||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1000 ACTACTGTATTTTTTGCTTGTTCTTCATATATTCTGGTGGGTTTTGATTTACCGGATGCT 1059
Query 1177 TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAG 1119
Query 1237 CGATGATGAACACGAGGATTAATCGCATG-TTGGGAATATTAGTAG--TGCACACGCTCT 1293
|||||||||||||||||||| || ||| | || ||||||||||| | ||| | | | |
Sbjct 1120 CGATGATGAACACGAGGATTGATTGCA-GATTCGGAATATTAGT-GCCTGCGC--GTTGT 1175
Query 1294 AT-ATCTCATGAATCTGAACCACACGGAGACT--AGGAATTTCAACATCAAGTAGGATGC 1350
| |||||||||| |||||||||||||||||| || | ||||||||| ||| ||||| |
Sbjct 1176 TTTATCTCATGAACCTGAACCACACGGAGACTTTAG-A-TTTCAACATGAAGCAGGATTC 1233
Query 1351 ATTGCAGTATTTGAACAGTTGGTTCATCATCTTCCAGAGGATCGTAACCGGATCAAACCG 1410
|||||||||||| ||||||||||||||||||||||||||||| | | | || |||
Sbjct 1234 ATTGCAGTATTTTAACAGTTGGTTCATCATCTTCCAGAGGAT--T----G--T-AA-CCG 1283
Query 1411 TTTTGAATGAATCGGTTTCTCAATCTGAATTTTTGAGTTTATTGTTTTCTCTAAA-GTTT 1469
|||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1284 ----GAATGAATCGGTTTCTCAATCTGAATTTTTGA-TTT--------CTCTAAAAGTTT 1330
Query 1470 GAGCAAATTCAAGATTTTGATCAAACTGCTCCACGTTCTATTGT-TTTTTCTTCT--A-T 1525
||||||||||||||||||| |||||||||| ||| || |||| | |||||||||| | |
Sbjct 1331 GAGCAAATTCAAGATTTTGCTCAAACTGCTACACTTTTTATT-TATTTTTCTTCTTCAGT 1389
Query 1526 ---AATT--TT-----TA-ATTTACGCTTTTGCAATAACACAATTCCTTGTATCATTATA 1574
|||| || || ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1390 TTGAATTGGTTGGGACTACATTTATGCTTTTGCAATAACACAATTCCTTGTATCATTAAA 1449
Query 1575 --CTAATGTCATCTCAAAATTAGCTCCCTT 1602
||||||||||||||||||||||||||||
Sbjct 1450 AACTAATGTCATCTCAAAATTAGCTCCCTT 1479
Score = 531 bits (287), Expect = 8e-150
Identities = 327/345 (95%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 124 ACATACATTCTCGAATAAATTCTGATCCGATCAAGAACTCATAATTATTGTAACAGATAA 183
|||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1 ACATACATTCTCGATTAAATTATGATCCGATCAAGAACTC---ATTATTGTAACAGATAA 57
Query 184 AATCAAATTTGAGAGATCTACTACTAAATCTAACTTAAAGCATTGTAC---TTTCT-TTT 239
| ||||||||| |||||| |||||||||||||||||||||||||| || ||| | |||
Sbjct 58 AGTCAAATTTGTGAGATCCACTACTAAATCTAACTTAAAGCATTGAACTTTTTTTTCTTT 117
Query 240 ATCTCATTCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGT 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATCTCA-TCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGT 176
Query 300 GATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATT 236
Query 360 GGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGT 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 GGGAACAAGAATCGTTCCCAACTTATCAGGATTTAGGGTTTTTGCCTCTCTTTGCAGTGT 296
Query 420 TCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGA 464
|||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 TCTTTCCTACAATTCGATTTCTACTTGATAGATTCGTCTTCGAGA 341
> Ahg896391 jgi|Araly1|896391|Al_scaffold_0005_357
Length=534
Score = 900 bits (487), Expect = 0.0
Identities = 517/532 (97%), Gaps = 0/532 (0%)
Strand=Plus/Plus
Query 725 ATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGA 60
Query 785 CGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTC 844
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CGGTCTGATTTCGGAGTTTCGATGGGTCATCATATCACAACTCTTGTTCTCATTGTCCTC 120
Query 845 TCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGC 180
Query 905 GATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGC 964
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 181 GATGTGTTCCTTGAAATTGGGAAAATGTCGAAGTATTGCGGAGCTGAAAGTCTCGCGAGC 240
Query 965 ATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTT 1024
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTCGTTTGTTCTTTTCGCTTTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTT 300
Query 1025 TGGATCCTGTGGAGCACGAGCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCT 1084
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TGGATCCTGTGGAGCACAAGCTATCAAATTATTATGACTGTGGACAAAGAAAAGCATCCT 360
Query 1085 AATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCAC 1144
||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 361 AATGGGCCGATCTTGTACTATATGTTCAACACACTACTGTATTTTTTGCTTGTTCTTCAT 420
Query 1145 ATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAG 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAG 480
Query 1205 CTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATT 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63077445720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5