BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25545.1 Length=1147 Score E Sequences producing significant alignments: (Bits) Value Ahg484310 jgi|Araly1|484310|fgenesh2_kg.5__302__AT3G25545.1 1485 0.0 > Ahg484310 jgi|Araly1|484310|fgenesh2_kg.5__302__AT3G25545.1 Length=1080 Score = 1485 bits (804), Expect = 0.0 Identities = 993/1076 (92%), Gaps = 46/1076 (4%) Strand=Plus/Plus Query 3 GGTTTTAGCTTTCTCGCTGTCTTGGCCGAGAAGACTGAAACCAATTGCAACaaaaagaaa 62 |||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||| ||| Sbjct 1 GGTTTTAGATTTATCGCTGTCTTGGACGAGAAGACTGAAACCAATTGCAAC--AAA-AAA 57 Query 63 gataaaaaaaaacaaaaaaTCTCTTCTTTGTTCATCATCATCGATCGATTCTACTGCAAC 122 | |||||| | ||||||||||| | |||||||||||||||||| |||||| Sbjct 58 G----AAAAAAGC------TCTCTTCTTTG-T--TCATCATCGATCGATTCTTCTGCAAA 104 Query 123 AAGGTCTGTGAGATTTTGATAAAAGCTAAGATATGGAAGATGTACTTACCGAGAATCCTC 182 ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 105 AAGGTTTGTGAGATTTCGATAAAAGCTAAGAAATGGAAGATGTACTTACCGAGAATCCTC 164 Query 183 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCAGCCACCTGAATCCCTTC 242 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 165 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCCGCCACCTGAATCCCTTC 224 Query 243 CATCTCCTTTCATCATATTCTCAAACCCGAAACCTGAACTTCCTCTCCGACCATCTCTAC 302 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 225 CATCTCCTTTCATCATATTCTCAAATCCGAAACCCGAACTTCCTCTCCGACCATCTCTAC 284 Query 303 TTATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAGTTTACCTTCAAAGACTC 362 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 285 TCATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAATTTACCTTCAAAGACTC 344 Query 363 TCCTTGGAAGTCTCATCATGCCTGAAGTTCCGTTTTCTGGAAACACCATGGAACCTTCTT 422 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 345 TCCTTGGAAGTCTCATCATGCCTGAAGTCCCGTTTTCTGGAAACACCATGGAACCTTCGT 404 Query 423 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTGCTGATGATAAAAACTTGACCC 482 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 405 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTACTGATGACAAAAACTTGATCC 464 Query 483 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTGC 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 465 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTTC 524 Query 543 TCATT-GCCAAAGACATTATCCCCGAGCGGGTGATAATCTTGGATTCCATTCAGAGCCGT 601 ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 525 TCATTGGCC-AAGACATTATCCCCGAGCGGGTTATAATCTTGGATTCCATTCAGAGCCGT 583 Query 602 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCCAAACTCGAGACATCTGCT 661 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 584 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCTAAACTCGAGACATCTGCT 643 Query 662 GAGAAGAAAGCAACAACTCACACCGGTTTAGTGAATCTCGATTACTTCCCATCAGGGAGT 721 ||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 644 GAGAAGAAAGCAATAACTCACACCGGGTTGGTGAATCTGGATTACTTCCCATCAGGGAGT 703 Query 722 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 763 Query 782 ACATTGGTGATCTCATGGCCTGAGTTTGGTCCTTCAGTGATAAGATTCGCCGGAGCTCTG 841 |||||||||||| |||||||||||||||||||||| || |||||||| | |||||||||| Sbjct 764 ACATTGGTGATCACATGGCCTGAGTTTGGTCCTTCTGTTATAAGATTTGTCGGAGCTCTG 823 Query 842 CTGAAGAAAATTGTCCCGAGTTTGGATGTTGCGAGTGTGAACAAAGATCTGGAGAAGAAT 901 |||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 824 CTGAAGAACATTGTCCCGAGTTTGGATGTCGTGAGTGTGAACAAAGATCTGGAGAAGAAT 883 Query 902 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 943 Query 962 AGAGACAGAGTAATGAAAGCTTCTCACTTGTTTCATGTTTCTATGCTTACTAGGAAAAAA 1021 |||||||| | || || || ||||||| | ||||||| | ||| |||| Sbjct 944 AGAGACAG--T--TG-----TT-TC--TTGTTTC-T------ATGCTTAGTTGGACAAAA 984 Query 1022 CAGAGACCTTATTTACGCTTGTGTTGTTCTCATTGCAAAAACAGTTTTGTTTCATT 1077 |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 985 CAGAGACCTT------GCTTGTGTT---CTCATTGCAAAAACAGTTTTGTTTCATT 1031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42773912874 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5