BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25545.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484310 jgi|Araly1|484310|fgenesh2_kg.5__302__AT3G25545.1 1485 0.0
> Ahg484310 jgi|Araly1|484310|fgenesh2_kg.5__302__AT3G25545.1
Length=1080
Score = 1485 bits (804), Expect = 0.0
Identities = 993/1076 (92%), Gaps = 46/1076 (4%)
Strand=Plus/Plus
Query 3 GGTTTTAGCTTTCTCGCTGTCTTGGCCGAGAAGACTGAAACCAATTGCAACaaaaagaaa 62
|||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 1 GGTTTTAGATTTATCGCTGTCTTGGACGAGAAGACTGAAACCAATTGCAAC--AAA-AAA 57
Query 63 gataaaaaaaaacaaaaaaTCTCTTCTTTGTTCATCATCATCGATCGATTCTACTGCAAC 122
| |||||| | ||||||||||| | |||||||||||||||||| ||||||
Sbjct 58 G----AAAAAAGC------TCTCTTCTTTG-T--TCATCATCGATCGATTCTTCTGCAAA 104
Query 123 AAGGTCTGTGAGATTTTGATAAAAGCTAAGATATGGAAGATGTACTTACCGAGAATCCTC 182
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 105 AAGGTTTGTGAGATTTCGATAAAAGCTAAGAAATGGAAGATGTACTTACCGAGAATCCTC 164
Query 183 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCAGCCACCTGAATCCCTTC 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 165 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCCGCCACCTGAATCCCTTC 224
Query 243 CATCTCCTTTCATCATATTCTCAAACCCGAAACCTGAACTTCCTCTCCGACCATCTCTAC 302
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 225 CATCTCCTTTCATCATATTCTCAAATCCGAAACCCGAACTTCCTCTCCGACCATCTCTAC 284
Query 303 TTATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAGTTTACCTTCAAAGACTC 362
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 285 TCATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAATTTACCTTCAAAGACTC 344
Query 363 TCCTTGGAAGTCTCATCATGCCTGAAGTTCCGTTTTCTGGAAACACCATGGAACCTTCTT 422
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 345 TCCTTGGAAGTCTCATCATGCCTGAAGTCCCGTTTTCTGGAAACACCATGGAACCTTCGT 404
Query 423 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTGCTGATGATAAAAACTTGACCC 482
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 405 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTACTGATGACAAAAACTTGATCC 464
Query 483 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTGC 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 465 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTTC 524
Query 543 TCATT-GCCAAAGACATTATCCCCGAGCGGGTGATAATCTTGGATTCCATTCAGAGCCGT 601
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 525 TCATTGGCC-AAGACATTATCCCCGAGCGGGTTATAATCTTGGATTCCATTCAGAGCCGT 583
Query 602 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCCAAACTCGAGACATCTGCT 661
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 584 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCTAAACTCGAGACATCTGCT 643
Query 662 GAGAAGAAAGCAACAACTCACACCGGTTTAGTGAATCTCGATTACTTCCCATCAGGGAGT 721
||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 644 GAGAAGAAAGCAATAACTCACACCGGGTTGGTGAATCTGGATTACTTCCCATCAGGGAGT 703
Query 722 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 763
Query 782 ACATTGGTGATCTCATGGCCTGAGTTTGGTCCTTCAGTGATAAGATTCGCCGGAGCTCTG 841
|||||||||||| |||||||||||||||||||||| || |||||||| | ||||||||||
Sbjct 764 ACATTGGTGATCACATGGCCTGAGTTTGGTCCTTCTGTTATAAGATTTGTCGGAGCTCTG 823
Query 842 CTGAAGAAAATTGTCCCGAGTTTGGATGTTGCGAGTGTGAACAAAGATCTGGAGAAGAAT 901
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 824 CTGAAGAACATTGTCCCGAGTTTGGATGTCGTGAGTGTGAACAAAGATCTGGAGAAGAAT 883
Query 902 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 943
Query 962 AGAGACAGAGTAATGAAAGCTTCTCACTTGTTTCATGTTTCTATGCTTACTAGGAAAAAA 1021
|||||||| | || || || ||||||| | ||||||| | ||| ||||
Sbjct 944 AGAGACAG--T--TG-----TT-TC--TTGTTTC-T------ATGCTTAGTTGGACAAAA 984
Query 1022 CAGAGACCTTATTTACGCTTGTGTTGTTCTCATTGCAAAAACAGTTTTGTTTCATT 1077
|||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 985 CAGAGACCTT------GCTTGTGTT---CTCATTGCAAAAACAGTTTTGTTTCATT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5