BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25560.3
Length=2281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484312 jgi|Araly1|484312|fgenesh2_kg.5__304__AT3G25560.2 3169 0.0
> Ahg484312 jgi|Araly1|484312|fgenesh2_kg.5__304__AT3G25560.2
Length=2183
Score = 3169 bits (1716), Expect = 0.0
Identities = 1935/2040 (95%), Gaps = 17/2040 (1%)
Strand=Plus/Plus
Query 173 TTTTTCTTAAAAACCTCCAAACAAAGAATCG---aaaaaaaGAATATTTCTTATACAAAA 229
|||||| ||| |||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 1 TTTTTCCTAATAACCTCCAAACAAATACTTGAAAAAAAAAAGAATATTTCTTATACAAAA 60
Query 230 GAAATAAACCTCAAACTCTGCACCTTAGAG---ATTAATACTCTCAAGAAAAACAAGTTT 286
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAAATACACCTCAAACTCTGCACCTTAGAGATTATTAATACTCTCAAGAAAAACAAGTTT 120
Query 287 TGATTCGGACAAAGATGTTGCAAGGAAGAAGAGAAGCAAAAAAGAGTTATGctttgttct 346
||||| ||| ||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 121 TGATTTAGACTAAGATGTTGCAAGGAAGAAGAAAAGTAGAAAAGAGTTATGCTTTGTTCT 180
Query 347 cttcaact-ttcttcttcttctttatctgttttctttcttcttcttctGCAGAACTCACA 405
|||||| | ||||||| |||||| || ||||| || ||||||||||||||||||||||||
Sbjct 181 CTTCAA-TCTTCTTCTACTTCTTCATTTGTTTCCTATCTTCTTCTTCTGCAGAACTCACA 239
Query 406 GACAAAGGTGTTAACTTTGAAGTTGTTGCCTTAATAGGAATCAAAAGCTCACTGACTGAT 465
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||
Sbjct 240 GACAAAGGTGTTAACTTTGAAGTTCTTGCCTTAATAGGTATCAAAAGCTCTCTGGTTGAT 299
Query 466 CCTCATGGAGTTCTA-ATGAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACAT 524
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTCATGGAGTTCTACA-GAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACAT 358
Query 525 GATCACTTG-T-T-CTGATGGTTTTGTCATAAGGCTAGAAGCTCCAAGCCAAAACTTATC 581
||||||||| | | |||||||||||||| |||| |||| |||||||||||| | ||| ||
Sbjct 359 GATCACTTGTTCTCCTGATGGTTTTGTCTTAAGCCTAGGAGCTCCAAGCCAGAGCTTGTC 418
Query 582 AGGAACTCTTTCATCAAGTATTGGAAATTTAACAAATCTTCAAACTGTGTTATTGCAGAA 641
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 AGGAACTCTTTCATCAAGTATTGGTAATTTAACAAATCTTCAAACTGTGTTATTGCAGAA 478
Query 642 CAATTACATAACAGGAAACATCCCTCATGAGATTGGGAAATTGATGAAACTCAAAACACT 701
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 CAATTACATAACAGGACATATCCCTCATGAGATTGGGAAATTGATGAAACTGAAAACACT 538
Query 702 TGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTTACTCCAAAAA 761
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 539 TGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTCATTCCACAAA 598
Query 762 TCTTCAGTACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGC 821
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTTCAATACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGC 658
Query 822 AAACATGACCCAACTCACTTTTTTGGATTTGTCGTATAATAACTTGAGTGGACCAGTTCC 881
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 659 AAACATGACCCAACTCACTTTTTTGGATTTGTCGTACAATAACTTGAGTGGACCAGTTCC 718
Query 882 AAGATCACTTGCCAAAACATTCAATGTTATGGGCAATTCTCAGATTTGTCCAACAGGAAC 941
||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||| ||
Sbjct 719 AAGATCACTTGCCAAAACATTTAGTGTTATGGGAAATCCTCAGATTTGTCCAACAGGCAC 778
Query 942 TGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCA 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCA 838
Query 1002 AAATAAATCATCTGATGGAGGAACTAAAAACCGGAAAATCGCGGTAGTCTTCGGTGTAAG 1061
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 839 AAATAAATCATCTGATGGAGGAACCAAAAACCGGAAAATCGCGGTAGTCTTTGGTGTAAG 898
Query 1062 -CTTGACATGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAA 1120
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTT-ACGTGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAA 957
Query 1121 GACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATGTGTC 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 GACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATACGTC 1017
Query 1181 TAGGGAATCTAAGGAGGTTTAATTTCAAAGAACTTCAATCCGCAACTAGTAACTTCAGCA 1240
| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 1018 TTGGGAATCTAAGGAGGTTTAGTTTCAAAGAACTTCAATCCGCAACGAGTAACTTCAGTA 1077
Query 1241 GCAAGAATCTGGTCGGAAAAGGAGGGTTTGGAAATGTGTATAAAGGTTGTCTTCATGATG 1300
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 GCAAGAATCTGGTAGGAAAAGGAGGGTTTGGGAATGTGTATAAAGGTTGTCTTCATGATG 1137
Query 1301 GAAGTATCATCGCGGTGAAGAGATTAAAGGATATAAACAATGGTGGTGGAGAGGTTCAGT 1360
|||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1138 GAAGCATCATTGCGGTGAAAAGATTAAAGGATATAAACAATGGCGGTGGAGAGATTCAGT 1197
Query 1361 TTCAGACAGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGC-TTATAC 1419
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1198 TTCAGACGGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGCCTT-TAC 1256
Query 1420 GGTTTCTGTACTACTTCCTCTGAACGGCTTCTCGTTTATCCTTACATGTCCAATGGCAGT 1479
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1257 GGTTTCTGCACTACTTCCTCTGAACGGCTTCTTGTCTATCCTTACATGTCCAATGGCAGT 1316
Query 1480 GTCGCTTCTCGTCTCAAAGCTAAACCGGTATTGGATTGGGGCACAAGAAAGCGAATAGCA 1539
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1317 GTTGCTTCTCGTCTCAAAGCTAAACCTGTATTGGATTGGGGCACAAGAAAGCGAATAGCA 1376
Query 1540 TTAGGAGCAGGAAGAGGGTTGCTGTATTTGCATGAGCAATGTGATCCAAAGATCATTCAC 1599
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1377 TTAGGAGCAGGAAGAGGGTTACTGTATTTGCACGAGCAATGTGATCCAAAGATCATTCAC 1436
Query 1600 CGTGATGTCAAAGCTGCGAACATACTTCTTGACGATTACTTTGAAGCTGTTGTCGGAGAT 1659
||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 1437 CGTGATGTCAAAGCTGCAAACATACTTCTTGACCATTACTGTGAAGCGGTTGTCGGAGAT 1496
Query 1660 TTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGA 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGA 1556
Query 1720 ACAGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCTGAGAAGACAGAT 1779
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1557 ACCGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCGGAGAAGACAGAT 1616
Query 1780 GTGTTCGGTTTCGGGATTCTTCTTCTCGAATTGATTACTGGATTGAGAGCTCTTGAATTC 1839
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1617 GTGTTCGGTTTTGGGATTCTTCTTCTTGAATTGATTACTGGATTGAGGGCTCTTGAATTT 1676
Query 1840 GGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTAAAGAAACTACAACAAGAG 1899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1677 GGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTGAAGAAACTACAACAAGAG 1736
Query 1900 AAGAAGCTAGAACAGATAGTAGACAAGGATTTGAAGAGCAACTACGATAGAATAGAAGTG 1959
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1737 AAGAAGCTAGAACAAATAGTAGACAAGGATTTGAAGAGCAACTACGACCGAATAGAAGTG 1796
Query 1960 GAAGAAATGGTTCAAGTGGCTTTGCTTTGTACACAGTATCTTCCCATTCACCGTCCTAAG 2019
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1797 GAAGAAATGGTTCAAGTGGCTTTGCTATGTACACAGTATCTTCCGATTCACCGTCCTAAG 1856
Query 2020 ATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTTGTTGAGAAATGGGAAGCTTCT 2079
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1857 ATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTCGTTGAGAAATGGGAAGCTTCT 1916
Query 2080 TCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAACGAGTTTTCTTCCTCTGAA 2139
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1917 TCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAATGAGTTTTCTTCCTCTGAA 1976
Query 2140 CGTTATTCGGATCTTACAGATGATTCCTCGGTGCTGGTTCAAGCCATGGAGTTATCAGGT 2199
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1977 CGTTATTCAGATCTCACAGATGATTCCTCTGTGCTGGTTCAAGCCATGGAGTTATCAGGT 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893502475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5