BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25560.3 Length=2281 Score E Sequences producing significant alignments: (Bits) Value Ahg484312 jgi|Araly1|484312|fgenesh2_kg.5__304__AT3G25560.2 3169 0.0 > Ahg484312 jgi|Araly1|484312|fgenesh2_kg.5__304__AT3G25560.2 Length=2183 Score = 3169 bits (1716), Expect = 0.0 Identities = 1935/2040 (95%), Gaps = 17/2040 (1%) Strand=Plus/Plus Query 173 TTTTTCTTAAAAACCTCCAAACAAAGAATCG---aaaaaaaGAATATTTCTTATACAAAA 229 |||||| ||| |||||||||||||| | | | |||||||||||||||||||||||||| Sbjct 1 TTTTTCCTAATAACCTCCAAACAAATACTTGAAAAAAAAAAGAATATTTCTTATACAAAA 60 Query 230 GAAATAAACCTCAAACTCTGCACCTTAGAG---ATTAATACTCTCAAGAAAAACAAGTTT 286 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 GAAATACACCTCAAACTCTGCACCTTAGAGATTATTAATACTCTCAAGAAAAACAAGTTT 120 Query 287 TGATTCGGACAAAGATGTTGCAAGGAAGAAGAGAAGCAAAAAAGAGTTATGctttgttct 346 ||||| ||| ||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct 121 TGATTTAGACTAAGATGTTGCAAGGAAGAAGAAAAGTAGAAAAGAGTTATGCTTTGTTCT 180 Query 347 cttcaact-ttcttcttcttctttatctgttttctttcttcttcttctGCAGAACTCACA 405 |||||| | ||||||| |||||| || ||||| || |||||||||||||||||||||||| Sbjct 181 CTTCAA-TCTTCTTCTACTTCTTCATTTGTTTCCTATCTTCTTCTTCTGCAGAACTCACA 239 Query 406 GACAAAGGTGTTAACTTTGAAGTTGTTGCCTTAATAGGAATCAAAAGCTCACTGACTGAT 465 |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| Sbjct 240 GACAAAGGTGTTAACTTTGAAGTTCTTGCCTTAATAGGTATCAAAAGCTCTCTGGTTGAT 299 Query 466 CCTCATGGAGTTCTA-ATGAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACAT 524 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CCTCATGGAGTTCTACA-GAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACAT 358 Query 525 GATCACTTG-T-T-CTGATGGTTTTGTCATAAGGCTAGAAGCTCCAAGCCAAAACTTATC 581 ||||||||| | | |||||||||||||| |||| |||| |||||||||||| | ||| || Sbjct 359 GATCACTTGTTCTCCTGATGGTTTTGTCTTAAGCCTAGGAGCTCCAAGCCAGAGCTTGTC 418 Query 582 AGGAACTCTTTCATCAAGTATTGGAAATTTAACAAATCTTCAAACTGTGTTATTGCAGAA 641 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 419 AGGAACTCTTTCATCAAGTATTGGTAATTTAACAAATCTTCAAACTGTGTTATTGCAGAA 478 Query 642 CAATTACATAACAGGAAACATCCCTCATGAGATTGGGAAATTGATGAAACTCAAAACACT 701 |||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| Sbjct 479 CAATTACATAACAGGACATATCCCTCATGAGATTGGGAAATTGATGAAACTGAAAACACT 538 Query 702 TGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTTACTCCAAAAA 761 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct 539 TGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTCATTCCACAAA 598 Query 762 TCTTCAGTACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGC 821 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCTTCAATACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGC 658 Query 822 AAACATGACCCAACTCACTTTTTTGGATTTGTCGTATAATAACTTGAGTGGACCAGTTCC 881 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 659 AAACATGACCCAACTCACTTTTTTGGATTTGTCGTACAATAACTTGAGTGGACCAGTTCC 718 Query 882 AAGATCACTTGCCAAAACATTCAATGTTATGGGCAATTCTCAGATTTGTCCAACAGGAAC 941 ||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||| || Sbjct 719 AAGATCACTTGCCAAAACATTTAGTGTTATGGGAAATCCTCAGATTTGTCCAACAGGCAC 778 Query 942 TGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCA 1001 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCA 838 Query 1002 AAATAAATCATCTGATGGAGGAACTAAAAACCGGAAAATCGCGGTAGTCTTCGGTGTAAG 1061 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 839 AAATAAATCATCTGATGGAGGAACCAAAAACCGGAAAATCGCGGTAGTCTTTGGTGTAAG 898 Query 1062 -CTTGACATGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAA 1120 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CCTT-ACGTGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAA 957 Query 1121 GACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATGTGTC 1180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 958 GACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATACGTC 1017 Query 1181 TAGGGAATCTAAGGAGGTTTAATTTCAAAGAACTTCAATCCGCAACTAGTAACTTCAGCA 1240 | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | Sbjct 1018 TTGGGAATCTAAGGAGGTTTAGTTTCAAAGAACTTCAATCCGCAACGAGTAACTTCAGTA 1077 Query 1241 GCAAGAATCTGGTCGGAAAAGGAGGGTTTGGAAATGTGTATAAAGGTTGTCTTCATGATG 1300 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1078 GCAAGAATCTGGTAGGAAAAGGAGGGTTTGGGAATGTGTATAAAGGTTGTCTTCATGATG 1137 Query 1301 GAAGTATCATCGCGGTGAAGAGATTAAAGGATATAAACAATGGTGGTGGAGAGGTTCAGT 1360 |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct 1138 GAAGCATCATTGCGGTGAAAAGATTAAAGGATATAAACAATGGCGGTGGAGAGATTCAGT 1197 Query 1361 TTCAGACAGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGC-TTATAC 1419 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1198 TTCAGACGGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGCCTT-TAC 1256 Query 1420 GGTTTCTGTACTACTTCCTCTGAACGGCTTCTCGTTTATCCTTACATGTCCAATGGCAGT 1479 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1257 GGTTTCTGCACTACTTCCTCTGAACGGCTTCTTGTCTATCCTTACATGTCCAATGGCAGT 1316 Query 1480 GTCGCTTCTCGTCTCAAAGCTAAACCGGTATTGGATTGGGGCACAAGAAAGCGAATAGCA 1539 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1317 GTTGCTTCTCGTCTCAAAGCTAAACCTGTATTGGATTGGGGCACAAGAAAGCGAATAGCA 1376 Query 1540 TTAGGAGCAGGAAGAGGGTTGCTGTATTTGCATGAGCAATGTGATCCAAAGATCATTCAC 1599 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1377 TTAGGAGCAGGAAGAGGGTTACTGTATTTGCACGAGCAATGTGATCCAAAGATCATTCAC 1436 Query 1600 CGTGATGTCAAAGCTGCGAACATACTTCTTGACGATTACTTTGAAGCTGTTGTCGGAGAT 1659 ||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||| Sbjct 1437 CGTGATGTCAAAGCTGCAAACATACTTCTTGACCATTACTGTGAAGCGGTTGTCGGAGAT 1496 Query 1660 TTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGA 1719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGA 1556 Query 1720 ACAGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCTGAGAAGACAGAT 1779 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1557 ACCGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCGGAGAAGACAGAT 1616 Query 1780 GTGTTCGGTTTCGGGATTCTTCTTCTCGAATTGATTACTGGATTGAGAGCTCTTGAATTC 1839 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1617 GTGTTCGGTTTTGGGATTCTTCTTCTTGAATTGATTACTGGATTGAGGGCTCTTGAATTT 1676 Query 1840 GGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTAAAGAAACTACAACAAGAG 1899 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1677 GGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTGAAGAAACTACAACAAGAG 1736 Query 1900 AAGAAGCTAGAACAGATAGTAGACAAGGATTTGAAGAGCAACTACGATAGAATAGAAGTG 1959 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1737 AAGAAGCTAGAACAAATAGTAGACAAGGATTTGAAGAGCAACTACGACCGAATAGAAGTG 1796 Query 1960 GAAGAAATGGTTCAAGTGGCTTTGCTTTGTACACAGTATCTTCCCATTCACCGTCCTAAG 2019 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1797 GAAGAAATGGTTCAAGTGGCTTTGCTATGTACACAGTATCTTCCGATTCACCGTCCTAAG 1856 Query 2020 ATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTTGTTGAGAAATGGGAAGCTTCT 2079 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1857 ATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTCGTTGAGAAATGGGAAGCTTCT 1916 Query 2080 TCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAACGAGTTTTCTTCCTCTGAA 2139 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1917 TCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAATGAGTTTTCTTCCTCTGAA 1976 Query 2140 CGTTATTCGGATCTTACAGATGATTCCTCGGTGCTGGTTCAAGCCATGGAGTTATCAGGT 2199 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1977 CGTTATTCAGATCTCACAGATGATTCCTCTGTGCTGGTTCAAGCCATGGAGTTATCAGGT 2036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85893502475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5