BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25572.1 Length=1700 Score E Sequences producing significant alignments: (Bits) Value Ahg484313 jgi|Araly1|484313|fgenesh2_kg.5__305__AT3G25570.1 1271 0.0 > Ahg484313 jgi|Araly1|484313|fgenesh2_kg.5__305__AT3G25570.1 Length=1453 Score = 1271 bits (688), Expect = 0.0 Identities = 825/890 (93%), Gaps = 13/890 (1%) Strand=Plus/Plus Query 142 GAATCCATTTCTTGACTTAGTTCTGGCTTTTT-ATTGCTCTG---TTCTTCACAGGTGAA 197 |||||| ||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| Sbjct 1 GAATCCTTTTCTTGACTTAGTTTTGG-TTTTTAATTGCTCTGTCTTTCTTGACAGGTGAA 59 Query 198 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAG--G--G- 252 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 60 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAGTAGTAGT 119 Query 253 A-CAGTCTTTTCTTCGAAGCTCCTCTTCGTTACAGCATTGAAGACGTTAGACCAAACGGT 311 | ||||||||||| ||||||||||||| | |||| |||||||||||||||||| |||||| Sbjct 120 AACAGTCTTTTCTACGAAGCTCCTCTTGGATACATCATTGAAGACGTTAGACCTAACGGT 179 Query 312 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTGGAAAACCATCCTGATAT 371 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | Sbjct 180 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTCGCAAACCATCCTGATTT 239 Query 372 TCCTCAATACGTTTTCTTCTTAACCACTTACTAACTGTGGTTGATCAATGTTCGCGATAA 431 || ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct 240 TCTTCAATACGTTTTCCTCCTAACCACTTACTAACTGTGGTTGATCAACGTTCGCGATAA 299 Query 432 ATCTTCGTTTTTTCTTGTTTTGTTCTCTTTCAAAACTCATTTTTCGATAGTCTCTTCGCC 491 ||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| | Sbjct 300 ATCTTCGTTCTTTCTTGTTTTGTTCTCCTTCAAAACTCATTTTTTGACGGCCTCTTCGTC 359 Query 492 TTTTGAAAAATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATC 551 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 TTTTGGAAAATGGCGGTCTCTGCTATTGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATT 419 Query 552 TCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAA-GAGTCTTCGTTCTCTTAC 610 |||||||||||| ||| || ||||||||||||| ||||||| | |||||||| ||||||| Sbjct 420 TCATTCTTTGAGCCTAGTGTCTTTCTTGATCCCAAAGGAAATG-GTCTTCGTGCTCTTAC 478 Query 611 CAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCAC 670 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 479 TAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAATGCACAATTGTTTCCTCTCTCTC 538 Query 671 AAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAA 730 ||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 539 AAACTCTTTGGTCGACTCTTACGTGCTCTCTGAATCTAGCCTCTTTGTCTATCCTTACAA 598 Query 731 GATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAG 790 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 599 GATCATCATCAAAACATGCGGGACTACGAAGCTTCTCTTTTCGATCCCGCATATCCTTAG 658 Query 791 GCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTAT 850 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 659 TCTGGCTGATTCACTTTGCCTTACTGTCAAATCTGTCCGCTACACTCGTGGTAGCTTCAT 718 Query 851 TTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 910 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTTCCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 778 Query 911 TGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAA 970 || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 779 TGGCTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTCATGGGAGGGTCAGATAA 838 Query 971 TAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTG 1020 ||||||||||||||||||||| ||||||||||||||| || | ||||||| Sbjct 839 TAACCCTCAGAGATGGCATGTCTACTCTGCTTCTTCTGCTTATGAATCTG 888 Score = 316 bits (171), Expect = 3e-85 Identities = 236/266 (89%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 1320 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCAT 1379 ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 1119 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGAACCAGAAGAATTCTCTGTAGCGGTGCAT 1178 Query 1380 GCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTT 1439 || ||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||| Sbjct 1179 GCCAATCTTGGAACCGAGCTATTGGCGTGTGATTGTATAGTTGATGTGAAGGGATACTTG 1238 Query 1440 AGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTT 1499 ||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| || | Sbjct 1239 AGCCAAGAGAGAGGACTAGAGGAGCTTGGACTTGGAGGTTCGGTTGTCTACTAGAAATAT 1298 Query 1500 GTCAAGA-CTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAGAA---G-A 1554 ||||| | |||||||||||||||| |||| |||||||||||||||||||| ||| | | Sbjct 1299 GTCAA-ATCTGTTGAATGTTGCTCTCCAATATCTACTCTTGGGTTCTGTTGGAAATAGGA 1357 Query 1555 --A-GTGATTAAAGAAGAAGAGTGAT 1577 | ||| ||||||||||||| |||| Sbjct 1358 CGAAGTGGTTAAAGAAGAAGAATGAT 1383 Score = 315 bits (170), Expect = 9e-85 Identities = 197/210 (94%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 1079 AAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTC 1138 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 911 AAAAGCTTCGGTGTTCTTTAAAACCAATTCGGTTTCAGCTTCTGAGATGACTATTAGCTC 970 Query 1139 TGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGG 1198 |||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 971 TGGGATTAGAAACATCCTTCCAGCCTCTGAAATCTGTGATTTTAACTTTGATCCTTGCGG 1030 Query 1199 TTACTCGATGAATTC-GATTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAG 1257 ||||||||||||||| | ||||||| ||||| ||||| |||||||||||||| ||||||| Sbjct 1031 TTACTCGATGAATTCAG-TTGAAGGAGATGCAGTTTCAACCATCCATGTGACTCCGGAAG 1089 Query 1258 ATGGTTTTAGCTATGCAAGCTTTGAAACAG 1287 | |||||||||||||||||||||||||||| Sbjct 1090 ACGGTTTTAGCTATGCAAGCTTTGAAACAG 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63763070130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5