BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25572.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484313 jgi|Araly1|484313|fgenesh2_kg.5__305__AT3G25570.1 1271 0.0
> Ahg484313 jgi|Araly1|484313|fgenesh2_kg.5__305__AT3G25570.1
Length=1453
Score = 1271 bits (688), Expect = 0.0
Identities = 825/890 (93%), Gaps = 13/890 (1%)
Strand=Plus/Plus
Query 142 GAATCCATTTCTTGACTTAGTTCTGGCTTTTT-ATTGCTCTG---TTCTTCACAGGTGAA 197
|||||| ||||||||||||||| ||| ||||| ||||||||| ||||| |||||||||
Sbjct 1 GAATCCTTTTCTTGACTTAGTTTTGG-TTTTTAATTGCTCTGTCTTTCTTGACAGGTGAA 59
Query 198 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAG--G--G- 252
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 60 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAGTAGTAGT 119
Query 253 A-CAGTCTTTTCTTCGAAGCTCCTCTTCGTTACAGCATTGAAGACGTTAGACCAAACGGT 311
| ||||||||||| ||||||||||||| | |||| |||||||||||||||||| ||||||
Sbjct 120 AACAGTCTTTTCTACGAAGCTCCTCTTGGATACATCATTGAAGACGTTAGACCTAACGGT 179
Query 312 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTGGAAAACCATCCTGATAT 371
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 180 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTCGCAAACCATCCTGATTT 239
Query 372 TCCTCAATACGTTTTCTTCTTAACCACTTACTAACTGTGGTTGATCAATGTTCGCGATAA 431
|| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TCTTCAATACGTTTTCCTCCTAACCACTTACTAACTGTGGTTGATCAACGTTCGCGATAA 299
Query 432 ATCTTCGTTTTTTCTTGTTTTGTTCTCTTTCAAAACTCATTTTTCGATAGTCTCTTCGCC 491
||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| |
Sbjct 300 ATCTTCGTTCTTTCTTGTTTTGTTCTCCTTCAAAACTCATTTTTTGACGGCCTCTTCGTC 359
Query 492 TTTTGAAAAATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATC 551
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TTTTGGAAAATGGCGGTCTCTGCTATTGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATT 419
Query 552 TCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAA-GAGTCTTCGTTCTCTTAC 610
|||||||||||| ||| || ||||||||||||| ||||||| | |||||||| |||||||
Sbjct 420 TCATTCTTTGAGCCTAGTGTCTTTCTTGATCCCAAAGGAAATG-GTCTTCGTGCTCTTAC 478
Query 611 CAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCAC 670
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 479 TAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAATGCACAATTGTTTCCTCTCTCTC 538
Query 671 AAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAA 730
||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 539 AAACTCTTTGGTCGACTCTTACGTGCTCTCTGAATCTAGCCTCTTTGTCTATCCTTACAA 598
Query 731 GATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAG 790
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 599 GATCATCATCAAAACATGCGGGACTACGAAGCTTCTCTTTTCGATCCCGCATATCCTTAG 658
Query 791 GCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTAT 850
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 659 TCTGGCTGATTCACTTTGCCTTACTGTCAAATCTGTCCGCTACACTCGTGGTAGCTTCAT 718
Query 851 TTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 910
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTCCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 778
Query 911 TGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAA 970
|| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 779 TGGCTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTCATGGGAGGGTCAGATAA 838
Query 971 TAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTG 1020
||||||||||||||||||||| ||||||||||||||| || | |||||||
Sbjct 839 TAACCCTCAGAGATGGCATGTCTACTCTGCTTCTTCTGCTTATGAATCTG 888
Score = 316 bits (171), Expect = 3e-85
Identities = 236/266 (89%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 1320 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCAT 1379
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1119 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGAACCAGAAGAATTCTCTGTAGCGGTGCAT 1178
Query 1380 GCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTT 1439
|| ||||||||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||
Sbjct 1179 GCCAATCTTGGAACCGAGCTATTGGCGTGTGATTGTATAGTTGATGTGAAGGGATACTTG 1238
Query 1440 AGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTT 1499
||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 1239 AGCCAAGAGAGAGGACTAGAGGAGCTTGGACTTGGAGGTTCGGTTGTCTACTAGAAATAT 1298
Query 1500 GTCAAGA-CTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAGAA---G-A 1554
||||| | |||||||||||||||| |||| |||||||||||||||||||| ||| | |
Sbjct 1299 GTCAA-ATCTGTTGAATGTTGCTCTCCAATATCTACTCTTGGGTTCTGTTGGAAATAGGA 1357
Query 1555 --A-GTGATTAAAGAAGAAGAGTGAT 1577
| ||| ||||||||||||| ||||
Sbjct 1358 CGAAGTGGTTAAAGAAGAAGAATGAT 1383
Score = 315 bits (170), Expect = 9e-85
Identities = 197/210 (94%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 1079 AAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTC 1138
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 911 AAAAGCTTCGGTGTTCTTTAAAACCAATTCGGTTTCAGCTTCTGAGATGACTATTAGCTC 970
Query 1139 TGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGG 1198
|||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 971 TGGGATTAGAAACATCCTTCCAGCCTCTGAAATCTGTGATTTTAACTTTGATCCTTGCGG 1030
Query 1199 TTACTCGATGAATTC-GATTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAG 1257
||||||||||||||| | ||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1031 TTACTCGATGAATTCAG-TTGAAGGAGATGCAGTTTCAACCATCCATGTGACTCCGGAAG 1089
Query 1258 ATGGTTTTAGCTATGCAAGCTTTGAAACAG 1287
| ||||||||||||||||||||||||||||
Sbjct 1090 ACGGTTTTAGCTATGCAAGCTTTGAAACAG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5